prot_H-paniculata_contig49412.12128.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig49412.12128.1
Unique Nameprot_H-paniculata_contig49412.12128.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length207
Homology
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BLAST of mRNA_H-paniculata_contig49412.12128.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.080e-32
Identity = 75/168 (44.64%), Postives = 99/168 (58.93%), Query Frame = 0 
Query:   10 GNGQGAWAALQYQYDGNTKEARRECHDKLHTTTMQSGDDAEDFLFVIDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVRIASCEKRDFNLADSRHMVSTMYTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDCTARNKGQAVTGEHKK 177
            G+G GAW  L+  +DG+TKEARR C  KL  TTM+SG+D  DFL  +D  R RLE+M + IPDE YED++LRAL  EY  +R  S + R F L + R  +  MY D LSR ++   VAGRGVAM A         +++ C  C + GH   +C    KG+    + KK
Sbjct:   58 GDGAGAWKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSAES-------SNVQCRNCQEFGHYANECRKHGKGKGNRRQGKK 218
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BLAST of mRNA_H-paniculata_contig49412.12128.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.080e-13
Identity = 51/168 (30.36%), Postives = 86/168 (51.19%), Query Frame = 0 
Query:   36 DKLHTTTMQSGDDAEDFLFVIDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVRIASCEKRDFNLADSRHMVSTMY---TDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDCTARNKGQAVTGEHKKHGGDGKPQWCSLYMTNNHSDEEC 200
            +KL  T+M+ G + +D+       R ++E+M + I D  ++D+ +     EY+ V++      +FN+    HM +TM+    D  SR  +   +AGRG  M  +           TCF CG++GH++R+C  R +G+   G  +K    G  +WC  + T  +SDEEC
Sbjct:    2 EKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNV---NHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQ------ETCFGCGEKGHIRRNCLQR-RGK---GRQRKTKPAGATKWCCFHFTTKNSDEEC 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49412.12128.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE1.080e-3244.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6Q1_ECTSI1.080e-1330.36CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 148..164
e-value: 2.1E-4
score: 30.6
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 148..163
e-value: 5.4E-6
score: 26.2
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 149..162
score: 10.197
NoneNo IPR availableGENE3D4.10.60.10coord: 127..179
e-value: 2.2E-7
score: 32.7
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 15..96
e-value: 3.4E-11
score: 43.0
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 136..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49412contigH-paniculata_contig49412:538..1158 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49412.12128.1mRNA_H-paniculata_contig49412.12128.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig49412 538..1158 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig49412.12128.1 ID=prot_H-paniculata_contig49412.12128.1|Name=mRNA_H-paniculata_contig49412.12128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
MGKTYDDGVGNGQGAWAALQYQYDGNTKEARRECHDKLHTTTMQSGDDAE
DFLFVIDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVRIASCEKRDF
NLADSRHMVSTMYTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCF
FCGKRGHLKRDCTARNKGQAVTGEHKKHGGDGKPQWCSLYMTNNHSDEEC
RVLQRHN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf