mRNA_H-paniculata_contig49412.12128.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49412.12128.1
Unique NamemRNA_H-paniculata_contig49412.12128.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig49412.12128.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.080e-32
Identity = 75/168 (44.64%), Postives = 99/168 (58.93%), Query Frame = 1 
Query:   28 GNGQGAWAALQYQYDGNTKEARRECHDKLHTTTMQSGDDAEDFLFVIDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVRIASCEKRDFNLADSRHMVSTMYTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDCTARNKGQAVTGEHKK 531
            G+G GAW  L+  +DG+TKEARR C  KL  TTM+SG+D  DFL  +D  R RLE+M + IPDE YED++LRAL  EY  +R  S + R F L + R  +  MY D LSR ++   VAGRGVAM A         +++ C  C + GH   +C    KG+    + KK
Sbjct:   58 GDGAGAWKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKSSGPSVAGRGVAMSAES-------SNVQCRNCQEFGHYANECRKHGKGKGNRRQGKK 218
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BLAST of mRNA_H-paniculata_contig49412.12128.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.080e-13
Identity = 51/168 (30.36%), Postives = 86/168 (51.19%), Query Frame = 1 
Query:  106 DKLHTTTMQSGDDAEDFLFVIDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVRIASCEKRDFNLADSRHMVSTMY---TDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCFFCGKRGHLKRDCTARNKGQAVTGEHKKHGGDGKPQWCSLYMTNNHSDEEC 600
            +KL  T+M+ G + +D+       R ++E+M + I D  ++D+ +     EY+ V++      +FN+    HM +TM+    D  SR  +   +AGRG  M  +           TCF CG++GH++R+C  R +G+   G  +K    G  +WC  + T  +SDEEC
Sbjct:    2 EKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNV---NHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQ------ETCFGCGEKGHIRRNCLQR-RGK---GRQRKTKPAGATKWCCFHFTTKNSDEEC 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49412.12128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE1.080e-3244.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6Q1_ECTSI1.080e-1330.36CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49412contigH-paniculata_contig49412:538..1158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size621
Cds size621
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930459.016166-CDS-H-paniculata_contig49412:537..11581622930459.016166-CDS-H-paniculata_contig49412:537..1158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49412 538..1158 +
1691481301.1769702-CDS-H-paniculata_contig49412:537..11581691481301.1769702-CDS-H-paniculata_contig49412:537..1158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49412 538..1158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49412.12128.1prot_H-paniculata_contig49412.12128.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49412 538..1158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49412.12128.1

>prot_H-paniculata_contig49412.12128.1 ID=prot_H-paniculata_contig49412.12128.1|Name=mRNA_H-paniculata_contig49412.12128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
MGKTYDDGVGNGQGAWAALQYQYDGNTKEARRECHDKLHTTTMQSGDDAE
DFLFVIDGYRDRLEEMEQPIPDERYEDIILRALPAEYERVRIASCEKRDF
NLADSRHMVSTMYTDYLSRPNTANLVAGRGVAMQASGGSDGGRRNHITCF
FCGKRGHLKRDCTARNKGQAVTGEHKKHGGDGKPQWCSLYMTNNHSDEEC
RVLQRHN
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mRNA from alignment at H-paniculata_contig49412:538..1158+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49412.12128.1 ID=mRNA_H-paniculata_contig49412.12128.1|Name=mRNA_H-paniculata_contig49412.12128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=621bp|location=Sequence derived from alignment at H-paniculata_contig49412:538..1158+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAAAACCTACGACGATGGGGTAGGGAACGGGCAAGGAGCGTGGGC
AGCGCTGCAATACCAGTATGACGGCAACACCAAGGAAGCACGGAGGGAGT
GTCACGACAAACTCCACACAACAACGATGCAGTCCGGAGATGATGCGGAA
GATTTCCTCTTCGTCATTGATGGTTATCGTGATCGTTTGGAGGAAATGGA
GCAACCCATACCTGACGAACGCTACGAGGACATTATTCTCCGAGCCCTCC
CCGCTGAGTACGAAAGGGTTCGTATTGCCAGTTGCGAGAAACGTGACTTC
AATTTGGCGGACAGTCGACACATGGTTAGCACCATGTACACCGACTACCT
CTCCCGCCCGAATACCGCAAACCTGGTCGCAGGCCGCGGAGTCGCCATGC
AGGCAAGTGGGGGAAGTGATGGTGGCAGAAGGAACCACATAACATGTTTC
TTTTGCGGGAAGCGAGGCCACCTGAAAAGAGACTGCACCGCTCGGAATAA
GGGCCAAGCGGTGACCGGGGAACACAAAAAACATGGGGGAGACGGGAAAC
CACAATGGTGCTCTCTCTACATGACCAACAACCACAGTGACGAAGAATGC
CGTGTCTTGCAAAGACACAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig49412:538..1158+

>mRNA_H-paniculata_contig49412.12128.1 ID=mRNA_H-paniculata_contig49412.12128.1|Name=mRNA_H-paniculata_contig49412.12128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig49412:538..1158+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAAAACCTACGACGATGGGGTAGGGAACGGGCAAGGAGCGTGGGC
AGCGCTGCAATACCAGTATGACGGCAACACCAAGGAAGCACGGAGGGAGT
GTCACGACAAACTCCACACAACAACGATGCAGTCCGGAGATGATGCGGAA
GATTTCCTCTTCGTCATTGATGGTTATCGTGATCGTTTGGAGGAAATGGA
GCAACCCATACCTGACGAACGCTACGAGGACATTATTCTCCGAGCCCTCC
CCGCTGAGTACGAAAGGGTTCGTATTGCCAGTTGCGAGAAACGTGACTTC
AATTTGGCGGACAGTCGACACATGGTTAGCACCATGTACACCGACTACCT
CTCCCGCCCGAATACCGCAAACCTGGTCGCAGGCCGCGGAGTCGCCATGC
AGGCAAGTGGGGGAAGTGATGGTGGCAGAAGGAACCACATAACATGTTTC
TTTTGCGGGAAGCGAGGCCACCTGAAAAGAGACTGCACCGCTCGGAATAA
GGGCCAAGCGGTGACCGGGGAACACAAAAAACATGGGGGAGACGGGAAAC
CACAATGGTGCTCTCTCTACATGACCAACAACCACAGTGACGAAGAATGC
CGTGTCTTGCAAAGACACAACATGGGGAAAACCTACGACGATGGGGTAGG
GAACGGGCAAGGAGCGTGGGCAGCGCTGCAATACCAGTATGACGGCAACA
CCAAGGAAGCACGGAGGGAGTGTCACGACAAACTCCACACAACAACGATG
CAGTCCGGAGATGATGCGGAAGATTTCCTCTTCGTCATTGATGGTTATCG
TGATCGTTTGGAGGAAATGGAGCAACCCATACCTGACGAACGCTACGAGG
ACATTATTCTCCGAGCCCTCCCCGCTGAGTACGAAAGGGTTCGTATTGCC
AGTTGCGAGAAACGTGACTTCAATTTGGCGGACAGTCGACACATGGTTAG
CACCATGTACACCGACTACCTCTCCCGCCCGAATACCGCAAACCTGGTCG
CAGGCCGCGGAGTCGCCATGCAGGCAAGTGGGGGAAGTGATGGTGGCAGA
AGGAACCACATAACATGTTTCTTTTGCGGGAAGCGAGGCCACCTGAAAAG
AGACTGCACCGCTCGGAATAAGGGCCAAGCGGTGACCGGGGAACACAAAA
AACATGGGGGAGACGGGAAACCACAATGGTGCTCTCTCTACATGACCAAC
AACCACAGTGACGAAGAATGCCGTGTCTTGCAAAGACACAAC
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