mRNA_H-paniculata_contig49200.12095.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49200.12095.1
Unique NamemRNA_H-paniculata_contig49200.12095.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig49200.12095.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 7.680e-54
Identity = 122/358 (34.08%), Postives = 189/358 (52.79%), Query Frame = 1
Query:    1 LRQSPKTWHRTIDTDLRKIGFVATVSDLCVYVKGSSNN------YIHAYNIRQRSAHHRAQQYGRRQSPFYTQGQIHYDRLWRPDANSRDRH-----PQDKECGTISIGQHHCVVSLLNKFGMDDCNSVHTPGTGKELTVKPEGSVLLDEQGTINYQAIVGSLIFLT*SIRMDIGFAVSQAACFMPNLASVHMRSVKRILRYLKGAPNVKLDYSRDSNFELTGFCDASYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKITAQSTTEAELIAMSTCAKQGVYLSGILGELGWKNFRSVRIFCDNKGALLLAGQGNYGSRSKHLAFCFAGLRD*INQREIIIDHVSTKNELSDILTRF 1041
            L QSP  W+ T+D  L   G+  T SD CVYV  + N       Y+    I            G  Q     + +   DR    D     R       +D E GT++I Q H V +LL +FGM + N V TPG G E++       +L      NYQ++ GS+++L    R D+ +A  Q +    N A V+M + K +LRYL+G P + + Y R   F L  F D+S+G  +P+  RST+G ++FL+GG++ + +  Q +TAQST EAE+ A+S  A++ VY+S  + EL +K F SV I  D+ GAL +AG   +  R+     CF  +R+ + + +I + H  ++++L+DI T++
Sbjct:   12 LSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTTGNIIVILTVYVDDILIT-----------GGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKR-GQFRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTNVALRCFF-IRELVLRGQITLHHRPSEHQLADIATKY 355          
BLAST of mRNA_H-paniculata_contig49200.12095.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 6.660e-52
Identity = 120/353 (33.99%), Postives = 189/353 (53.54%), Query Frame = 1
Query:    1 LRQSPKTWHRTIDTDLRKIGFVATVSDLCVYVKGSSNN------YIHAYNIRQRSAHHRAQQYGRRQSPFYTQGQIHYDRLWRPDANSRDRHPQDKECGTISIGQHHCVVSLLNKFGMDDCNSVHTPGTGKELTVKPEGSVLLDEQGTINYQAIVGSLIFLT*SIRMDIGFAVSQAACFMPNLASVHMRSVKRILRYLKGAPNVKLDYSRDSNFELTGFCDASYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKITAQSTTEAELIAMSTCAKQGVYLSGILGELGWKNFRSVRIFCDNKGALLLAGQGNYGSRSKHLAFCFAGLRD*INQREIIIDHVSTKNELSDILTRF 1041
            L QS   W+ T+D  L  +G+  T SD CVYV  S N       Y+    I         Q+       F         R+   D        +D E GT++I Q H V +LL +FGM + N V TPG G E++       +L       YQ++ GS+++L    R D+ +A  Q +    N A V+M + K +LRYL+G P + + Y R   F L  F D+S+G  +P+  RST+G ++FL+GG++ + +  Q +TAQST EAE+ A+S  A++ VY+S  + EL +K F SV I  D+ GAL +AG   +  R+KH+A  +  +R+ + + +I + H  ++++L+DI T++
Sbjct:  339 LSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQ------RDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKR-GQFRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKY 683          
BLAST of mRNA_H-paniculata_contig49200.12095.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 6.670e-52
Identity = 99/259 (38.22%), Postives = 152/259 (58.69%), Query Frame = 1
Query:  262 QDKECGTISIGQHHCVVSLLNKFGMDDCNSVHTPGTGKELTVKPEGSVLLDEQGTINYQAIVGSLIFLT*SIRMDIGFAVSQAACFMPNLASVHMRSVKRILRYLKGAPNVKLDYSRDSNFELTGFCDASYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKITAQSTTEAELIAMSTCAKQGVYLSGILGELGWKNFRSVRIFCDNKGALLLAGQGNYGSRSKHLAFCFAGLRD*INQREIIIDHVSTKNELSDILTR 1038
            +D E GT++I Q      +L ++GM+  N V TPG G EL+ +     LL  +    +Q I GSL++L    R D+ +AV Q      N A VHM + K +LRYL+G P++ + Y +   F L+ F D+S+G  +P+  RST+G ++FL GG++ + +  Q + AQ+T EAEL A+S  A++ VY+S  + E+G+K FRSV I  D+ GAL +A    + SR+KH+A  F  LR+      I + H  +   L+DI T+
Sbjct:   22 RDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATK 278          
BLAST of mRNA_H-paniculata_contig49200.12095.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.060e-51
Identity = 120/353 (33.99%), Postives = 188/353 (53.26%), Query Frame = 1
Query:    1 LRQSPKTWHRTIDTDLRKIGFVATVSDLCVYVKGSSNN------YIHAYNIRQRSAHHRAQQYGRRQSPFYTQGQIHYDRLWRPDANSRDRHPQDKECGTISIGQHHCVVSLLNKFGMDDCNSVHTPGTGKELTVKPEGSVLLDEQGTINYQAIVGSLIFLT*SIRMDIGFAVSQAACFMPNLASVHMRSVKRILRYLKGAPNVKLDYSRDSNFELTGFCDASYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKITAQSTTEAELIAMSTCAKQGVYLSGILGELGWKNFRSVRIFCDNKGALLLAGQGNYGSRSKHLAFCFAGLRD*INQREIIIDHVSTKNELSDILTRF 1041
            L QSP  W+ T+D  L   G+  T SD CVYV  S N       Y+    I         Q+       F         R+   D        +D E GT++I Q H V +LL +FGM + N V TPG G E++       +L       YQ++ GS+++L    R D+ +A  Q +    N A V+M + K +LRYL+G P + + Y R   F L  F D+S+G  +P+  RST+G ++FL+GG++ + +  Q +TAQST EAE+ A+S  A++ VY+S  + EL +K F SV I  D+ GAL +AG   +  R+KH+   +  +R+ + + +I + H  ++++L+DI T++
Sbjct:  495 LSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQ------RDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKR-GQFRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKY 839          
BLAST of mRNA_H-paniculata_contig49200.12095.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.770e-51
Identity = 118/353 (33.43%), Postives = 187/353 (52.97%), Query Frame = 1
Query:    1 LRQSPKTWHRTIDTDLRKIGFVATVSDLCVYVKGSSNN------YIHAYNIRQRSAHHRAQQYGRRQSPFYTQGQIHYDRLWRPDANSRDRHPQDKECGTISIGQHHCVVSLLNKFGMDDCNSVHTPGTGKELTVKPEGSVLLDEQGTINYQAIVGSLIFLT*SIRMDIGFAVSQAACFMPNLASVHMRSVKRILRYLKGAPNVKLDYSRDSNFELTGFCDASYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKITAQSTTEAELIAMSTCAKQGVYLSGILGELGWKNFRSVRIFCDNKGALLLAGQGNYGSRSKHLAFCFAGLRD*INQREIIIDHVSTKNELSDILTRF 1041
            L QSP  W+ T+D  L   G+  T SD CVYV  S N       Y+    I         Q+       F         R+   D        +D E GT++I Q H V + L +FGM + N V T G G E++       +L       YQ++ GS+++L    + D+ +A  Q +    N A V+M + K +LRYL+G P + + Y R   F L  F D+S+G  +P+  RST+G ++FL+GG++ + +  Q +TAQST EAE+ A+S  A++ VY+S  + EL +K F SV I  D+ GAL +AG   +  R+KH+A  +  +R+ + + +I + H  ++++L+DI T++
Sbjct:  131 LSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQ------RDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKR-GQFRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKY 475          
BLAST of mRNA_H-paniculata_contig49200.12095.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 6.980e-51
Identity = 103/259 (39.77%), Postives = 165/259 (63.71%), Query Frame = 1
Query:  277 GTISIGQHHCVVSLLNKFGMDDCNSVHTPGTGKELTVKPEGSVLLDEQGTINYQAIVGSLIFLT*SIRMDIGFAVSQAACFMPNLASVHMRSVKRILRYLKGAPNVKLDYSRDSNFELTGFCDASY-GTGDPEKARSTSGSMYFLSGGVVHFSSSLQKITAQSTTEAELIAMSTCAKQGVYLSGILGELGWKNFRSVRIFCDNKGALLLAGQGNYGSRSKHLAFCFAGLRD*INQREIIIDHVSTKNELSDILTRFCSR 1050
            G I + QH  V+++L+K+ M DC    TPG+G E+  +PE ++ L E+    YQ IVGSL+FLT + R +IG+AV      M    + HM   KR+LRYL+G P++ L + R   ++L  +CDAS+ G+ +  + RS++G ++ L+GGVV  +S+LQK+TAQS+  AE+IAM+T A++ +YL G+L ELG+    ++ I  D+ GA+  AG   +  RSK ++  +  LR  +N+  I++  V ++ +L+DILT+   R
Sbjct:  433 GEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRR-GQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFP-CGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLER 689          
BLAST of mRNA_H-paniculata_contig49200.12095.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 1.520e-50
Identity = 123/360 (34.17%), Postives = 194/360 (53.89%), Query Frame = 1
Query:    1 LRQSPKTWHRTIDTDLRKIGFVATVSDLCVYVKGSSNNY-IHAYNIRQRSAHHRAQQYGRRQSPFYTQGQIHYDRLWRPDANSRDRH-----PQDKECGTISIGQHHCVVSLLNKFGMDDCNSVHTPGTGKELTVKPEGSVLLDEQGTINYQAIVGSLIFLT*SIRMDIGFAVSQAACFMPNLASVHMRSVKRILRYLKGAPNVKLDYSRDS------NFELTGFCDASYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKITAQSTTEAELIAMSTCAKQG-VYLSGILGELGWKNFRSVRIFCDNKGALLLAGQGNYGSRSKHLAFCFAGLRD*INQREIIIDHVSTKNELSDILTRF 1041
            L QSP  W+ T+D  L   G+  T SD CVYV  S N+  I +  +         QQ   ++    T      DR    D     R      P+D E GT++I Q H V +LL +FGM + N V TPG G E++       +L       YQ++ GS+++L    R D+ +A  Q +    N A V+M + K +LRYL+G P + + Y R+          L  F D+S+G  +P+  RST+G ++FL+GG++ + +  Q +TAQST EAE+ A+S  A++  VY+S  + EL +K F SV I  D+ GAL +AG   +  R+KH+A  +  +R+ + + +I + H  ++++L+DI T++
Sbjct:  718 LLQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVISSVYVDDILITGGDQQLVDQKKKELT------DRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKY 1070          
BLAST of mRNA_H-paniculata_contig49200.12095.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 2.370e-49
Identity = 119/352 (33.81%), Postives = 184/352 (52.27%), Query Frame = 1
Query:    1 LRQSPKTWHRTIDTDLRKIGFVATVSDLCVYVKGSSNN------YIHAYNIRQRSAHHRAQQYGRRQSPFYTQGQIHYDRLWRPDANSRDRHPQDKECGTISIGQHHCVVSLLNKFGMDDCNSVHTPGTGKELTVKPEGSVLLDEQGTINYQAIVGSLIFLT*SIRMDIGFAVSQAACFMPNLASVHMRSVKRILRYLKGAPNVKLDYSRDSNFELTGFCDASYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKITAQSTTEAELIAMSTCAKQGVYLSGILGELGWKNFRSVRIFCDNKGALLLAGQGNYGSRSKHLAFCFAGLRD*INQREIIIDHVSTKNELSDILTR 1038
            L QSP  W+  I+  L   G+  T SD CVY+  S +       Y+    I   +    +++       F         R+   +        +D E GT++I Q      +L ++GM+  N V TPG G EL+ +     LL  +    +QAI GSL++L    R D+ +AV Q      N A VHM + K +LRYL+G P++ + Y +   F L+ F D+S+G  +P+  RST+G ++FL GG++ + +  Q + AQ+T EAEL A+S  A++ VY+S  + E+G+K FRSV I  D+ GAL +A    + SR+KH+A  F  LR+      I + H  +   L+DI T+
Sbjct:  372 LSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQ------RDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GKFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATK 715          
BLAST of mRNA_H-paniculata_contig49200.12095.1 vs. uniprot
Match: A0A6H5K4S5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S5_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 3.210e-48
Identity = 97/277 (35.02%), Postives = 159/277 (57.40%), Query Frame = 1
Query:  262 QDKECGTISIGQHHCVVSLLNKFGMDDCNSVHTPGTGKELTVKPEGSVLLDEQGTINYQAIVGSLIFLT*SIRMDIGFAVSQAACFMPNLASVHMRSVKRILRYLKGAPN-----------------VKLDYSRDSNFELTGFCDASYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKITAQSTTEAELIAMSTCAKQGVYLSGILGELGWKNFRSVRIFCDNKGALLLAGQGNYGSRSKHLAFCFAGLRD*INQREIIIDHVSTKNELSDILTRF 1041
            +D E GT++I Q H V +LL +FGM + N V TPG G E++       +L       YQ++ GS+++L    R D+ +A  Q +    N A V+M + K +LRYL+G P                  + + Y R   F L  F D+S+G  +P+  RST+G ++FL+GG++ + +  Q +TAQST EAE+ A+S  A++ VY+S  + EL +K F SV I  D+ GAL +AG   +  R+KH+A  +  +R+ + + +I + H  ++++L+DI T++
Sbjct:   41 RDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVXXXXXXXXXXXXXXXSVLPIVYKR-GQFRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKY 315          
BLAST of mRNA_H-paniculata_contig49200.12095.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 5.100e-46
Identity = 100/272 (36.76%), Postives = 151/272 (55.51%), Query Frame = 1
Query:  223 LWRPDANSRDRHPQDKECGTISIGQHHCVVSLLNKFGMDDCNSVHTPGTGKELTVKPEGSVLLDEQGTINYQAIVGSLIFLT*SIRMDIGFAVSQAACFMPNLASVHMRSVKRILRYLKGAPNVKLDYSRDSNFELTGFCDASYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKITAQSTTEAELIAMSTCAKQGVYLSGILGELGWKNFRSVRIFCDNKGALLLAGQGNYGSRSKHLAFCFAGLRD*INQREIIIDHVSTKNELSDILTR 1038
            LW    N R           I  G H  +  +  ++GM+  N V TPG G EL+ +     LL  +    +QAI GSL++L    R D+ +AV Q      N A VHM + K +LRYL+G P++ + Y +   F L+ F D+S+G  +P+  RST+G ++FL GG++ + +  Q + AQ+T EAEL A+S  A++ VY+S  + E+G+K FRSV I  D+ GAL +A    + SR+KH+A  F  LR+      I + H  +   L+DI T+
Sbjct:  615 LWNDAINDR----------LIIFGWHFEMTDMGERYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDMSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKK-GQFRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATK 874          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49200.12095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUJ3_9PHAE7.680e-5434.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE6.660e-5233.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KC04_9PHAE6.670e-5238.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE92_9PHAE1.060e-5133.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE1.770e-5133.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J897_9PHAE6.980e-5139.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR8_9PHAE1.520e-5034.17Integrase catalytic domain-containing protein n=11... [more]
A0A6H5JF46_9PHAE2.370e-4933.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S5_9PHAE3.210e-4835.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S9_9PHAE5.100e-4636.76CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49200contigH-paniculata_contig49200:316..1368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score120.9
Seed ortholog evalue5.4e-25
Seed eggNOG ortholog698440.XP_007297771.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrotransposon
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size1053
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49200.12095.1prot_H-paniculata_contig49200.12095.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49200 400..888 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930454.4634202-UTR-H-paniculata_contig49200:315..3991622930454.4634202-UTR-H-paniculata_contig49200:315..399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49200 316..399 -
1691481299.0089498-UTR-H-paniculata_contig49200:315..3991691481299.0089498-UTR-H-paniculata_contig49200:315..399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49200 316..399 -
1622930454.5014527-UTR-H-paniculata_contig49200:888..13681622930454.5014527-UTR-H-paniculata_contig49200:888..1368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49200 889..1368 -
1691481299.0289593-UTR-H-paniculata_contig49200:888..13681691481299.0289593-UTR-H-paniculata_contig49200:888..1368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49200 889..1368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930454.4819217-CDS-H-paniculata_contig49200:399..8881622930454.4819217-CDS-H-paniculata_contig49200:399..888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49200 400..888 -
1691481299.0215733-CDS-H-paniculata_contig49200:399..8881691481299.0215733-CDS-H-paniculata_contig49200:399..888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49200 400..888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49200.12095.1

>prot_H-paniculata_contig49200.12095.1 ID=prot_H-paniculata_contig49200.12095.1|Name=mRNA_H-paniculata_contig49200.12095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp
MDIGFAVSQAACFMPNLASVHMRSVKRILRYLKGAPNVKLDYSRDSNFEL
TGFCDASYGTGDPEKARSTSGSMYFLSGGVVHFSSSLQKITAQSTTEAEL
IAMSTCAKQGVYLSGILGELGWKNFRSVRIFCDNKGALLLAGQGNYGSRS
KHLAFCFAGLRD*
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mRNA from alignment at H-paniculata_contig49200:316..1368-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49200.12095.1 ID=mRNA_H-paniculata_contig49200.12095.1|Name=mRNA_H-paniculata_contig49200.12095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1053bp|location=Sequence derived from alignment at H-paniculata_contig49200:316..1368- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGCCAGTCTCCGAAGACGTGGCATAGAACCATCGATACAGATCTTCG GAAAATTGGCTTCGTTGCTACAGTGAGTGACCTGTGCGTGTACGTCAAAG GTAGCAGCAACAACTACATCCATGCTTACAACATACGTCAACGATCTGCT CATCACCGGGCCCAACAGTATGGCCGTCGCCAAAGTCCGTTCTACACTCA AGGCCAAATTCACTATGACCGACTTTGGAGACCCGACGCAAATTCTAGGG ATCGACATCCTCAGGACAAAGAGTGCGGTACCATCAGCATAGGTCAGCAC CACTGCGTGGTATCGCTGCTGAACAAATTTGGCATGGACGACTGCAACTC AGTTCACACACCAGGCACAGGCAAGGAGCTGACGGTAAAGCCTGAAGGAA GTGTCTTACTGGACGAACAAGGTACAATAAATTATCAGGCCATTGTCGGG AGTCTCATCTTCTTGACTTAGTCTATTCGTATGGACATAGGGTTCGCTGT CTCACAAGCAGCGTGCTTCATGCCCAATCTTGCCTCCGTTCACATGAGAA GCGTGAAGCGCATCTTGCGCTACCTGAAAGGCGCGCCAAACGTAAAACTT GACTACAGTCGTGACTCCAACTTCGAGCTAACCGGCTTCTGCGACGCCTC CTATGGCACTGGCGACCCCGAGAAAGCTAGGTCAACCTCGGGGAGCATGT ACTTCCTCTCCGGTGGAGTTGTTCATTTCAGTTCGAGCCTACAGAAAATT ACGGCTCAGTCAACCACCGAGGCAGAACTAATCGCCATGAGCACCTGCGC TAAACAAGGAGTTTACCTGTCCGGCATCCTCGGAGAGCTTGGATGGAAGA ACTTCCGCAGCGTCCGCATCTTTTGCGATAATAAAGGAGCCCTACTTCTT GCGGGCCAGGGCAACTATGGAAGCAGGTCTAAACATCTGGCCTTTTGTTT TGCCGGGCTTCGTGATTGAATTAACCAGCGGGAGATAATCATCGACCATG TCTCCACGAAGAACGAGCTCAGCGACATCTTGACCAGGTTCTGCTCAAGA CCG
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Coding sequence (CDS) from alignment at H-paniculata_contig49200:316..1368-

>mRNA_H-paniculata_contig49200.12095.1 ID=mRNA_H-paniculata_contig49200.12095.1|Name=mRNA_H-paniculata_contig49200.12095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig49200:316..1368- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACATAGGGTTCGCTGTCTCACAAGCAGCGTGCTTCATGCCCAATCT
TGCCTCCGTTCACATGAGAAGCGTGAAGCGCATCTTGCGCTACCTGAAAG
GCGCGCCAAACGTAAAACTTGACTACAGTCGTGACTCCAACTTCGAGCTA
ACCGGCTTCTGCGACGCCTCCTATGGCACTGGCGACCCCGAGAAAGCTAG
GTCAACCTCGGGGAGCATGTACTTCCTCTCCGGTGGAGTTGTTCATTTCA
GTTCGAGCCTACAGAAAATTACGGCTCAGTCAACCACCGAGGCAGAACTA
ATCGCCATGAGCACCTGCGCTAAACAAGGAGTTTACCTGTCCGGCATCCT
CGGAGAGCTTGGATGGAAGAACTTCCGCAGCGTCCGCATCTTTTGCGATA
ATAAAGGAGCCCTACTTCTTGCGGGCCAGGGCAACTATGGAAGCAGGTCT
AAACATCTGGCCTTTTGTTTTGCCGGGCTTCGTGATTGAATGGACATAGG
GTTCGCTGTCTCACAAGCAGCGTGCTTCATGCCCAATCTTGCCTCCGTTC
ACATGAGAAGCGTGAAGCGCATCTTGCGCTACCTGAAAGGCGCGCCAAAC
GTAAAACTTGACTACAGTCGTGACTCCAACTTCGAGCTAACCGGCTTCTG
CGACGCCTCCTATGGCACTGGCGACCCCGAGAAAGCTAGGTCAACCTCGG
GGAGCATGTACTTCCTCTCCGGTGGAGTTGTTCATTTCAGTTCGAGCCTA
CAGAAAATTACGGCTCAGTCAACCACCGAGGCAGAACTAATCGCCATGAG
CACCTGCGCTAAACAAGGAGTTTACCTGTCCGGCATCCTCGGAGAGCTTG
GATGGAAGAACTTCCGCAGCGTCCGCATCTTTTGCGATAATAAAGGAGCC
CTACTTCTTGCGGGCCAGGGCAACTATGGAAGCAGGTCTAAACATCTGGC
CTTTTGTTTTGCCGGGCTTCGTGATTGA
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