mRNA_H-paniculata_contig4917.12090.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4917.12090.1
Unique NamemRNA_H-paniculata_contig4917.12090.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5JPQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ2_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.250e-43
Identity = 79/194 (40.72%), Postives = 122/194 (62.89%), Query Frame = 1
Query:    4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
            ILG+++ R+   GTL +SQ  YV ++L++FGM+EANP  +P  G ++      D  L     K YQ++ GS ++L QCTRFD+ Y+  Q ++  S P Q NM A K +LRYLR  P LP+ Y++  F L  ++D+S G   +  + ST+G +FFLA GL+ + +  Q + A S+ EAE+ AL+  A++ +Y+SN
Sbjct:   10 ILGIDVQRDYKQGTLVISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGR-STTGYLFFLARGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISN 202          
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 2.700e-42
Identity = 79/194 (40.72%), Postives = 121/194 (62.37%), Query Frame = 1
Query:    4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
            ILG+ + R+   GTL +SQ  YV ++L++FGM+EANP  +P  G ++      D  L     K YQ++ GS ++L QCTRFD+ Y+  Q ++  S P Q NM A K +LRYLR  P LP+ Y++  F L  ++D+S G   +  + ST+G +FFLA GL+ + +  Q + A S+ EAE+ AL+  A++ +Y+SN
Sbjct:   92 ILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQFRLAAFTDSSFGANPDNGR-STTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISN 284          
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.500e-41
Identity = 87/199 (43.72%), Postives = 134/199 (67.34%), Query Frame = 1
Query:    1 LILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASGKVMHQTADDN-QLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEET-RKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSNLHS 591
            L+LGMEI  +++ G + +SQ+KYV++IL ++ M +  PA +P SG  + Q  ++   L E+  K YQ IVGS +FLT  TR++I Y+V    R M+KP   +M+  KR+LRYLR  PD+P+K+R+  ++L  Y DAS  G+ E  +K+S++G IF LA G+V  +S+LQ++ A SS  AE++A+AT A++ IYL  + S
Sbjct:  422 LLLGMEI--SQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLS 618          
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 2.270e-40
Identity = 79/194 (40.72%), Postives = 122/194 (62.89%), Query Frame = 1
Query:    4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
            ILG+++ R+   GTL +SQ  YV ++L++FGM+EANP  +P  G ++      D  L     K YQ++ GS ++L QCTRFD+ Y+  Q ++  S P Q NM A K +LRYLR  P LP+ Y++  F L  ++D+S G   +  + ST+G +FFLA GL+ + +  Q + A S+ EAE+ AL+  A++ +Y+SN
Sbjct:  419 ILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGR-STTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISN 611          
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5L5K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K4_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 3.930e-40
Identity = 78/194 (40.21%), Postives = 120/194 (61.86%), Query Frame = 1
Query:    4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
            ILG+++ R+   GTL +SQ  YV ++L++FGM+EANP  +P  G ++      D  L     K Y+++ GS ++L QCTRFD+ Y+  Q ++  S P Q NM A K +LRYLR  P LP+ Y++  F L  ++D+S G   +  + ST+G  FFLA GL+ + +  Q   A S+ EAE+ AL+  A++ +Y+SN
Sbjct:   51 ILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYRSMTGSILYLAQCTRFDLSYAALQNSKACSNPAQVNMTAAKHVLRYLRGNPFLPIVYKRGQFRLAAFTDSSFGANPDNGR-STTGYPFFLAGGLISYGAKTQTRTAQSTVEAEIQALSYSAREAVYISN 243          
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 3.980e-40
Identity = 79/194 (40.72%), Postives = 122/194 (62.89%), Query Frame = 1
Query:    4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
            ILG+++ R+   GTL +SQ  YV ++L++FGM+EANP  +P  G ++      D  L     K YQ++ GS ++L QCTRFD+ Y+  Q ++  S P Q NM A K +LRYLR  P LP+ Y++  F L  ++D+S G   +  + ST+G +FFLA GL+ + +  Q + A S+ EAE+ AL+  A++ +Y+SN
Sbjct:  575 ILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGR-STTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISN 767          
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 4.030e-40
Identity = 75/190 (39.47%), Postives = 117/190 (61.58%), Query Frame = 1
Query:    4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGI 570
            ILG+++ R+   GTL +SQ  YV ++L++FGM+EANP  +P  G ++      D  L     K YQ++ GS ++L QCTRFD+ Y+  Q ++  S P Q NM A K +LRYLR  P LP+ Y++  F L  ++D+S G   +  + ST+G +FFLA GL+ + +  Q + A S+ E E+ AL+  A++ +
Sbjct:   92 ILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGR-STTGYLFFLAGGLISYGAKTQTLTAQSTVETEIQALSYLAREAV 280          
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5K4S5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S5_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.570e-38
Identity = 79/211 (37.44%), Postives = 122/211 (57.82%), Query Frame = 1
Query:    4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPD-----------------LPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
            ILG+++ R+   GTL +SQ  YV ++L++FGM+EANP  +P  G ++      D  L     K YQ++ GS ++L QCTRFD+ Y+  Q ++  S P Q NM A K +LRYLR  P                  LP+ Y++  F L  ++D+S G   +  + ST+G +FFLA GL+ + +  Q + A S+ EAE+ AL+  A++ +Y+SN
Sbjct:   34 ILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVXXXXXXXXXXXXXXXSVLPIVYKRGQFRLAAFTDSSFGANPDNGR-STTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISN 243          
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.510e-36
Identity = 77/194 (39.69%), Postives = 119/194 (61.34%), Query Frame = 1
Query:    4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
            ILG+++ R+   GTL +SQ  YV ++L++FGM+EANP  +   G ++      D  L     K YQ++  S ++L QCTRFD+ Y+  Q ++  S P Q N+ A K +LRYLR  P LP+ Y++  F L   +D+S G   +  + ST+G +FFLA GL+ + +  Q + A S+ EAE+ AL+  A++ IY+SN
Sbjct:  311 ILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGR-STTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSFSAREAIYISN 503          
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5K7T8_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T8_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.700e-36
Identity = 77/194 (39.69%), Postives = 119/194 (61.34%), Query Frame = 1
Query:    4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
            ILG+++ R+   GTL +SQ  YV ++L++FGM+EANP  +P  G ++      D  L     K YQ++ GS ++L QCTRFD+ Y+  Q ++  S P Q NM A K +LRY R  P LP+  ++ +F LV  + +S G      + ST+G +FFLA GL+ + +  Q + A S+ EAE+ AL+  A++ +Y+SN
Sbjct:  618 ILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYRRGNPVLPIVSKRGHFRLVALTGSSFGANPGNGR-STTGYLFFLAGGLISYGAKTQTLSAHSTVEAEIQALSYSAREAVYISN 810          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPQ2_9PHAE1.250e-4340.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUJ3_9PHAE2.700e-4240.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J897_9PHAE2.500e-4143.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF89_9PHAE2.270e-4040.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5K4_9PHAE3.930e-4040.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE92_9PHAE3.980e-4040.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAK0_9PHAE4.030e-4039.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S5_9PHAE1.570e-3837.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JDU8_9PHAE1.510e-3639.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K7T8_9PHAE1.700e-3639.69Integrase catalytic domain-containing protein n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4917contigH-paniculata_contig4917:2749..3348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score116.7
Seed ortholog evalue1.2e-23
Seed eggNOG ortholog1005962.W1QCY3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrotransposon
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSaccharomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size600
Cds size588
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930453.4634132-CDS-H-paniculata_contig4917:2748..33361622930453.4634132-CDS-H-paniculata_contig4917:2748..3336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4917 2749..3336 -
1691481298.5490804-CDS-H-paniculata_contig4917:2748..33361691481298.5490804-CDS-H-paniculata_contig4917:2748..3336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4917 2749..3336 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930453.4801385-UTR-H-paniculata_contig4917:3336..33481622930453.4801385-UTR-H-paniculata_contig4917:3336..3348Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4917 3337..3348 -
1691481298.562191-UTR-H-paniculata_contig4917:3336..33481691481298.562191-UTR-H-paniculata_contig4917:3336..3348Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4917 3337..3348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4917.12090.1prot_H-paniculata_contig4917.12090.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4917 2749..3336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4917.12090.1

>prot_H-paniculata_contig4917.12090.1 ID=prot_H-paniculata_contig4917.12090.1|Name=mRNA_H-paniculata_contig4917.12090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
MEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASGKVMHQTADD
NQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIA
VKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFF
LASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSNLHSTN*
back to top

mRNA from alignment at H-paniculata_contig4917:2749..3348-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4917.12090.1 ID=mRNA_H-paniculata_contig4917.12090.1|Name=mRNA_H-paniculata_contig4917.12090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=600bp|location=Sequence derived from alignment at H-paniculata_contig4917:2749..3348- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTAATACTGGGCATGGAGATACCTCGCAACAAGACGTCTGGTACACTGGA GCTATCTCAAAACAAGTACGTACTTTCTATTCTGAAACAATTTGGAATGG AAGAGGCTAATCCAGCCAAAAGCCCAGCATCAGGAAAAGTTATGCATCAA ACAGCTGACGACAACCAGCTAGACGAGCAAGGAACCAAGCAGTATCAAGC TATCGTGGGGAGCCCCATCTTCCTCACCCAATGCACACGGTTTGACATCT GCTACAGCGTGAGCCAAGCAGCTCGCTTCATGAGCAAACCTTTTCAGGAC AACATGATCGCGGTGAAGAGGATTTTACGATACCTACGGTGGCAACCAGA TCTGCCCGTAAAATACCGCAAAAACAATTTTGAGCTAGTGCGCTACTCAG ATGCCTCTCATGGAGGAACAGAGGAGACGCGGAAAAAGTCGACTAGCGGT TCAATATTCTTCTTGGCAAGTGGACTGGTACACTTTTCTTCAAGCCTTCA ACGCATCATAGCAACCTCAAGCACTGAGGCAGAGCTATTGGCATTAGCTA CATGTGCAAAGCAGGGTATTTACCTGTCAAATTTGCACAGCACCAACTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4917:2749..3348-

>mRNA_H-paniculata_contig4917.12090.1 ID=mRNA_H-paniculata_contig4917.12090.1|Name=mRNA_H-paniculata_contig4917.12090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig4917:2749..3348- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATACCTCGCAACAAGACGTCTGGTACACTGGAGCTATCTCAAAA
CAAGTACGTACTTTCTATTCTGAAACAATTTGGAATGGAAGAGGCTAATC
CAGCCAAAAGCCCAGCATCAGGAAAAGTTATGCATCAAACAGCTGACGAC
AACCAGCTAGACGAGCAAGGAACCAAGCAGTATCAAGCTATCGTGGGGAG
CCCCATCTTCCTCACCCAATGCACACGGTTTGACATCTGCTACAGCGTGA
GCCAAGCAGCTCGCTTCATGAGCAAACCTTTTCAGGACAACATGATCGCG
GTGAAGAGGATTTTACGATACCTACGGTGGCAACCAGATCTGCCCGTAAA
ATACCGCAAAAACAATTTTGAGCTAGTGCGCTACTCAGATGCCTCTCATG
GAGGAACAGAGGAGACGCGGAAAAAGTCGACTAGCGGTTCAATATTCTTC
TTGGCAAGTGGACTGGTACACTTTTCTTCAAGCCTTCAACGCATCATAGC
AACCTCAAGCACTGAGGCAGAGCTATTGGCATTAGCTACATGTGCAAAGC
AGGGTATTTACCTGTCAAATTTGCACAGCACCAACTGAATGGAGATACCT
CGCAACAAGACGTCTGGTACACTGGAGCTATCTCAAAACAAGTACGTACT
TTCTATTCTGAAACAATTTGGAATGGAAGAGGCTAATCCAGCCAAAAGCC
CAGCATCAGGAAAAGTTATGCATCAAACAGCTGACGACAACCAGCTAGAC
GAGCAAGGAACCAAGCAGTATCAAGCTATCGTGGGGAGCCCCATCTTCCT
CACCCAATGCACACGGTTTGACATCTGCTACAGCGTGAGCCAAGCAGCTC
GCTTCATGAGCAAACCTTTTCAGGACAACATGATCGCGGTGAAGAGGATT
TTACGATACCTACGGTGGCAACCAGATCTGCCCGTAAAATACCGCAAAAA
CAATTTTGAGCTAGTGCGCTACTCAGATGCCTCTCATGGAGGAACAGAGG
AGACGCGGAAAAAGTCGACTAGCGGTTCAATATTCTTCTTGGCAAGTGGA
CTGGTACACTTTTCTTCAAGCCTTCAACGCATCATAGCAACCTCAAGCAC
TGAGGCAGAGCTATTGGCATTAGCTACATGTGCAAAGCAGGGTATTTACC
TGTCAAATTTGCACAGCACCAACTGA
back to top