mRNA_H-paniculata_contig4917.12090.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5JPQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ2_9PHAE) HSP 1 Score: 154 bits (389), Expect = 1.250e-43 Identity = 79/194 (40.72%), Postives = 122/194 (62.89%), Query Frame = 1
Query: 4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
ILG+++ R+ GTL +SQ YV ++L++FGM+EANP +P G ++ D L K YQ++ GS ++L QCTRFD+ Y+ Q ++ S P Q NM A K +LRYLR P LP+ Y++ F L ++D+S G + + ST+G +FFLA GL+ + + Q + A S+ EAE+ AL+ A++ +Y+SN
Sbjct: 10 ILGIDVQRDYKQGTLVISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGR-STTGYLFFLARGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISN 202
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE) HSP 1 Score: 155 bits (391), Expect = 2.700e-42 Identity = 79/194 (40.72%), Postives = 121/194 (62.37%), Query Frame = 1
Query: 4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
ILG+ + R+ GTL +SQ YV ++L++FGM+EANP +P G ++ D L K YQ++ GS ++L QCTRFD+ Y+ Q ++ S P Q NM A K +LRYLR P LP+ Y++ F L ++D+S G + + ST+G +FFLA GL+ + + Q + A S+ EAE+ AL+ A++ +Y+SN
Sbjct: 92 ILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQFRLAAFTDSSFGANPDNGR-STTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISN 284
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 157 bits (398), Expect = 2.500e-41 Identity = 87/199 (43.72%), Postives = 134/199 (67.34%), Query Frame = 1
Query: 1 LILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASGKVMHQTADDN-QLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEET-RKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSNLHS 591
L+LGMEI +++ G + +SQ+KYV++IL ++ M + PA +P SG + Q ++ L E+ K YQ IVGS +FLT TR++I Y+V R M+KP +M+ KR+LRYLR PD+P+K+R+ ++L Y DAS G+ E +K+S++G IF LA G+V +S+LQ++ A SS AE++A+AT A++ IYL + S
Sbjct: 422 LLLGMEI--SQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLS 618
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 155 bits (391), Expect = 2.270e-40 Identity = 79/194 (40.72%), Postives = 122/194 (62.89%), Query Frame = 1
Query: 4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
ILG+++ R+ GTL +SQ YV ++L++FGM+EANP +P G ++ D L K YQ++ GS ++L QCTRFD+ Y+ Q ++ S P Q NM A K +LRYLR P LP+ Y++ F L ++D+S G + + ST+G +FFLA GL+ + + Q + A S+ EAE+ AL+ A++ +Y+SN
Sbjct: 419 ILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGR-STTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISN 611
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5L5K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K4_9PHAE) HSP 1 Score: 149 bits (376), Expect = 3.930e-40 Identity = 78/194 (40.21%), Postives = 120/194 (61.86%), Query Frame = 1
Query: 4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
ILG+++ R+ GTL +SQ YV ++L++FGM+EANP +P G ++ D L K Y+++ GS ++L QCTRFD+ Y+ Q ++ S P Q NM A K +LRYLR P LP+ Y++ F L ++D+S G + + ST+G FFLA GL+ + + Q A S+ EAE+ AL+ A++ +Y+SN
Sbjct: 51 ILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYRSMTGSILYLAQCTRFDLSYAALQNSKACSNPAQVNMTAAKHVLRYLRGNPFLPIVYKRGQFRLAAFTDSSFGANPDNGR-STTGYPFFLAGGLISYGAKTQTRTAQSTVEAEIQALSYSAREAVYISN 243
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 155 bits (391), Expect = 3.980e-40 Identity = 79/194 (40.72%), Postives = 122/194 (62.89%), Query Frame = 1
Query: 4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
ILG+++ R+ GTL +SQ YV ++L++FGM+EANP +P G ++ D L K YQ++ GS ++L QCTRFD+ Y+ Q ++ S P Q NM A K +LRYLR P LP+ Y++ F L ++D+S G + + ST+G +FFLA GL+ + + Q + A S+ EAE+ AL+ A++ +Y+SN
Sbjct: 575 ILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGR-STTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISN 767
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE) HSP 1 Score: 147 bits (370), Expect = 4.030e-40 Identity = 75/190 (39.47%), Postives = 117/190 (61.58%), Query Frame = 1
Query: 4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGI 570
ILG+++ R+ GTL +SQ YV ++L++FGM+EANP +P G ++ D L K YQ++ GS ++L QCTRFD+ Y+ Q ++ S P Q NM A K +LRYLR P LP+ Y++ F L ++D+S G + + ST+G +FFLA GL+ + + Q + A S+ E E+ AL+ A++ +
Sbjct: 92 ILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGR-STTGYLFFLAGGLISYGAKTQTLTAQSTVETEIQALSYLAREAV 280
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5K4S5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S5_9PHAE) HSP 1 Score: 144 bits (363), Expect = 1.570e-38 Identity = 79/211 (37.44%), Postives = 122/211 (57.82%), Query Frame = 1
Query: 4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPD-----------------LPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
ILG+++ R+ GTL +SQ YV ++L++FGM+EANP +P G ++ D L K YQ++ GS ++L QCTRFD+ Y+ Q ++ S P Q NM A K +LRYLR P LP+ Y++ F L ++D+S G + + ST+G +FFLA GL+ + + Q + A S+ EAE+ AL+ A++ +Y+SN
Sbjct: 34 ILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVXXXXXXXXXXXXXXXSVLPIVYKRGQFRLAAFTDSSFGANPDNGR-STTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISN 243
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE) HSP 1 Score: 143 bits (360), Expect = 1.510e-36 Identity = 77/194 (39.69%), Postives = 119/194 (61.34%), Query Frame = 1
Query: 4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
ILG+++ R+ GTL +SQ YV ++L++FGM+EANP + G ++ D L K YQ++ S ++L QCTRFD+ Y+ Q ++ S P Q N+ A K +LRYLR P LP+ Y++ F L +D+S G + + ST+G +FFLA GL+ + + Q + A S+ EAE+ AL+ A++ IY+SN
Sbjct: 311 ILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGR-STTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSFSAREAIYISN 503
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Match: A0A6H5K7T8_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T8_9PHAE) HSP 1 Score: 144 bits (364), Expect = 1.700e-36 Identity = 77/194 (39.69%), Postives = 119/194 (61.34%), Query Frame = 1
Query: 4 ILGMEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASG-KVMHQTADDNQLDEQGTKQYQAIVGSPIFLTQCTRFDICYSVSQAARFMSKPFQDNMIAVKRILRYLRWQPDLPVKYRKNNFELVRYSDASHGGTEETRKKSTSGSIFFLASGLVHFSSSLQRIIATSSTEAELLALATCAKQGIYLSN 582
ILG+++ R+ GTL +SQ YV ++L++FGM+EANP +P G ++ D L K YQ++ GS ++L QCTRFD+ Y+ Q ++ S P Q NM A K +LRY R P LP+ ++ +F LV + +S G + ST+G +FFLA GL+ + + Q + A S+ EAE+ AL+ A++ +Y+SN
Sbjct: 618 ILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYRRGNPVLPIVSKRGHFRLVALTGSSFGANPGNGR-STTGYLFFLAGGLISYGAKTQTLSAHSTVEAEIQALSYSAREAVYISN 810 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4917.12090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4917.12090.1 >prot_H-paniculata_contig4917.12090.1 ID=prot_H-paniculata_contig4917.12090.1|Name=mRNA_H-paniculata_contig4917.12090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp MEIPRNKTSGTLELSQNKYVLSILKQFGMEEANPAKSPASGKVMHQTADDback to top mRNA from alignment at H-paniculata_contig4917:2749..3348- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4917.12090.1 ID=mRNA_H-paniculata_contig4917.12090.1|Name=mRNA_H-paniculata_contig4917.12090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=600bp|location=Sequence derived from alignment at H-paniculata_contig4917:2749..3348- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4917:2749..3348- >mRNA_H-paniculata_contig4917.12090.1 ID=mRNA_H-paniculata_contig4917.12090.1|Name=mRNA_H-paniculata_contig4917.12090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig4917:2749..3348- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |