mRNA_H-paniculata_contig49133.12087.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL) HSP 1 Score: 184 bits (466), Expect = 8.070e-50 Identity = 98/237 (41.35%), Postives = 141/237 (59.49%), Query Frame = 1
Query: 4 LKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLEDLK-------------HNISQRFRMKDLGSLPRVLGIEVRR 675
+KGPEAE W+AAM++E +L +NGTW+ D LP GRKA+ KWIFKRKL EDG+V RYKA LVAQGF+Q G D+ E APV R T R + ++A++ ++ DV Y N +EE +F++QPP + +RD V L+KSLYGLKQ+ WN D L + +S D CL+ R+ G T L++ ++D+ +++ F++ LG + LGI++ R
Sbjct: 1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDA--VCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRNGKGYTYLVIYVDDMVIACNDDEEYEEIIKTLNRHFKVTSLGDISHFLGIKINR 232
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA) HSP 1 Score: 177 bits (449), Expect = 5.010e-48 Identity = 97/237 (40.93%), Postives = 142/237 (59.92%), Query Frame = 1
Query: 4 LKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLEDL-------------KHNISQRFRMKDLGSLPRVLGIEVRR 675
++ +A KW+ A E E+ +L N TWE LP GRKAI +KW+FK K +G + RYKA LVA+GF Q G DF ET APVA+ +++R + S+AA++ L MDV + N +EEE+++KQP F ++ V +L+++LYGLKQS R WN T+D+F+ IG + TD C++ RD+ +++ ++DL K +S+RF M DLG L LG+EV R
Sbjct: 1 MESSDASKWKEACESEFESLCKNKTWELVP---LPRGRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGFVD-AKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDDKAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVER 233
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: H3H7D1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7D1_PHYRM) HSP 1 Score: 168 bits (426), Expect = 9.370e-47 Identity = 93/239 (38.91%), Postives = 140/239 (58.58%), Query Frame = 1
Query: 1 ALKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVP-FVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLE---------------DLKHNISQRFRMKDLGSLPRVLGIEV 669
A++ +A KW+ A + E +L+ N TW D LP GRKAI +W+F+ K + G + R+KA LVA+GFSQ G D+ ET APVA+ +++R V SLAA++ +L MDV + N ++E++++ QP + D P V +L++SLYGLKQS R WN T+DDF++ +G + +D C++ RD G+ + V L D K +S RF M D+G L LG+E+
Sbjct: 8 AMESSDAAKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD--GQDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEI 239
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM) HSP 1 Score: 170 bits (431), Expect = 1.000e-46 Identity = 94/240 (39.17%), Postives = 143/240 (59.58%), Query Frame = 1
Query: 1 ALKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVP-FVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLV---------------VLEDLKHNISQRFRMKDLGSLPRVLGIEVR 672
A++ +A KW+ A + E +L+ N TW D LP GRKAI +W+F+ K + G + R+KA LVA+GFSQ D+ ET APVA+ +++R V SLAA++ +L MDV + N ++E++++ QP + D P V +L++SLYGLKQS R WN T+DDF++ +G + +D C++ RD G+ + V +LE KH +S+RF M DLG L LG+E++
Sbjct: 30 AMESTDAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIK 262
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS) HSP 1 Score: 179 bits (454), Expect = 3.410e-46 Identity = 99/242 (40.91%), Postives = 138/242 (57.02%), Query Frame = 1
Query: 1 ALKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLEDL-------------KHNISQRFRMKDLGSLPRVLGIEVRRGRPN 687
A PE +W+ AM+EE + + GT+ ED LPAGR I KW+F +K EDG+++RYKA LVAQG+SQ+ G D+ ET APV R+ ++R +AA D E+ MDV Y N +EEE++++QP + S V RLRK+LYGLKQS R WN D L IG + D C++ EG T + V ++DL K + F +KDLG +++GIE++R R N
Sbjct: 885 AEASPEWAEWKKAMDEEMSVIKEMGTYTKED---LPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVC---RLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTIITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDREN 1120
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: H3H7U0_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7U0_PHYRM) HSP 1 Score: 172 bits (437), Expect = 1.040e-45 Identity = 95/239 (39.75%), Postives = 143/239 (59.83%), Query Frame = 1
Query: 1 ALKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVP-FVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLV---------------VLEDLKHNISQRFRMKDLGSLPRVLGIEV 669
A++ +A KW+ A + E +L+ N TW D LP GRKAI +W+F+ K + G + R+KA LVA+GFSQ G D+ ET APVA+ +++R V SLAA++ +L MDV + N ++E++++ QP + D P V +L++SLYGLKQS R WN T+DDF++ +G + +D C++ RD G+ + V +LE KH +S+RF M DLG L LG+E+
Sbjct: 167 AMESSDAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEI 398
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A0C9RAA9_9HYME (POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9RAA9_9HYME) HSP 1 Score: 176 bits (446), Expect = 1.180e-45 Identity = 94/238 (39.50%), Postives = 144/238 (60.50%), Query Frame = 1
Query: 1 ALKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLED-------------LKHNISQRFRMKDLGSLPRVLGIEVRR 675
AL PEA+ W+ AM+EE + N TW +LP G++AI TKW+FK K +G++ RYKA LV +G SQ +G D+ ET +PV R ++LR +F++AA+HD + +D + N ++EE+F+KQP +S S V RL KSLYGLKQ+ + WN+ L++ L+ +GL RS D C++F E + + ++D +K+ +S + +MKD+GS VLG+ V+R
Sbjct: 239 ALNSPEADDWKRAMKEEIESHKTNRTWVLT---KLPEGKRAINTKWVFKTKRNAEGALVRYKARLVVKGCSQKQGVDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLNGELQEEVFMKQPEGYSDNSGRVC---RLLKSLYGLKQASKVWNDKLNEVLISLGLIRSEVDQCIYFCVSEYSMVYVAIYVDDVLVFSNDKKATQRIKNELSSKIKMKDMGSASSVLGMRVQR 470
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A151S930_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S930_CAJCA) HSP 1 Score: 169 bits (427), Expect = 1.840e-45 Identity = 95/233 (40.77%), Postives = 135/233 (57.94%), Query Frame = 1
Query: 22 EKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLEDL-------------KHNISQRFRMKDLGSLPRVLGIEVRRGR 681
E WR AME E AL N TW RLP G++ + KW+++ K K DGSV RYKA LVA+GF+Q EG D+FET +PV ++ST+R + SLAA H++ L +DVD + + + EE+++K PP F V +L KSLYGLKQ+ R WN L + L+ + +S+TD L + T LLV ++D+ K + +F +KDLG L LG+E+ R +
Sbjct: 55 ECWRRAMEAELQALEKNQTWSLV---RLPEGKRPVGCKWVYRVKYKVDGSVERYKARLVAKGFTQTEGVDYFETFSPVVKLSTVRFLLSLAAAHNWFLHQLDVDNAFLHGDLFEEVYMKPPPGFK--LSHPRLVCKLHKSLYGLKQASRQWNQKLTEALISLNFIQSSTDHSLFIKKSHSSITALLVYVDDVVLTGNDMAEISAVKAYLHAQFHIKDLGPLKFFLGLEIARSQ 282
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM) HSP 1 Score: 173 bits (438), Expect = 2.030e-45 Identity = 94/241 (39.00%), Postives = 144/241 (59.75%), Query Frame = 1
Query: 1 ALKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVP-FVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLEDL-------------KHNISQRFRMKDLGSLPRVLGIEVRRGR 681
A++ +A KW+ A + E +L+ N TW D LP GRKAI +W+F+ K + G + R+KA LVA+GFSQ G D+ ET APVA+ +++R V SLAA++ +L MDV + N ++E++++ QP + D P V +L++SLYGLKQS R WN T+DDF++ +G + +D C++ RD + + ++DL KH +S+RF M DLG L LG+E++ R
Sbjct: 289 AMESSDAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDR 524
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: H3HA00_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA00_PHYRM) HSP 1 Score: 172 bits (437), Expect = 3.370e-45 Identity = 95/239 (39.75%), Postives = 143/239 (59.83%), Query Frame = 1
Query: 1 ALKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVP-FVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLV---------------VLEDLKHNISQRFRMKDLGSLPRVLGIEV 669
A++ +A KW+ A + E +L+ N TW D LP GRKAI +W+F+ K + G + R+KA LVA+GFSQ G D+ ET APVA+ +++R V SLAA++ +L MDV + N ++E++++ QP + D P V +L++SLYGLKQS R WN T+DDF++ +G + +D C++ RD G+ + V +LE KH +S+RF M DLG L LG+E+
Sbjct: 164 AMESSDAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEI 395 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig49133.12087.1 >prot_H-paniculata_contig49133.12087.1 ID=prot_H-paniculata_contig49133.12087.1|Name=mRNA_H-paniculata_contig49133.12087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp MSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDback to top mRNA from alignment at H-paniculata_contig49133:95..1372- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig49133.12087.1 ID=mRNA_H-paniculata_contig49133.12087.1|Name=mRNA_H-paniculata_contig49133.12087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig49133:95..1372- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig49133:95..1372- >mRNA_H-paniculata_contig49133.12087.1 ID=mRNA_H-paniculata_contig49133.12087.1|Name=mRNA_H-paniculata_contig49133.12087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig49133:95..1372- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |