mRNA_H-paniculata_contig49133.12087.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49133.12087.1
Unique NamemRNA_H-paniculata_contig49133.12087.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 184 bits (466), Expect = 8.070e-50
Identity = 98/237 (41.35%), Postives = 141/237 (59.49%), Query Frame = 1
Query:    4 LKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLEDLK-------------HNISQRFRMKDLGSLPRVLGIEVRR 675
            +KGPEAE W+AAM++E  +L +NGTW+  D   LP GRKA+  KWIFKRKL EDG+V RYKA LVAQGF+Q  G D+ E  APV R  T R + ++A++    ++  DV   Y N  +EE +F++QPP +   +RD   V  L+KSLYGLKQ+   WN   D  L  +   +S  D CL+  R+  G T L++ ++D+                +++ F++  LG +   LGI++ R
Sbjct:    1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDA--VCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRNGKGYTYLVIYVDDMVIACNDDEEYEEIIKTLNRHFKVTSLGDISHFLGIKINR 232          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 177 bits (449), Expect = 5.010e-48
Identity = 97/237 (40.93%), Postives = 142/237 (59.92%), Query Frame = 1
Query:    4 LKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLEDL-------------KHNISQRFRMKDLGSLPRVLGIEVRR 675
            ++  +A KW+ A E E+ +L  N TWE      LP GRKAI +KW+FK K   +G + RYKA LVA+GF Q  G DF ET APVA+ +++R + S+AA++   L  MDV   + N  +EEE+++KQP  F   ++    V +L+++LYGLKQS R WN T+D+F+  IG  +  TD C++  RD+     +++ ++DL             K  +S+RF M DLG L   LG+EV R
Sbjct:    1 MESSDASKWKEACESEFESLCKNKTWELVP---LPRGRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGFVD-AKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDDKAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVER 233          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: H3H7D1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7D1_PHYRM)

HSP 1 Score: 168 bits (426), Expect = 9.370e-47
Identity = 93/239 (38.91%), Postives = 140/239 (58.58%), Query Frame = 1
Query:    1 ALKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVP-FVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLE---------------DLKHNISQRFRMKDLGSLPRVLGIEV 669
            A++  +A KW+ A + E  +L+ N TW   D   LP GRKAI  +W+F+ K  + G + R+KA LVA+GFSQ  G D+ ET APVA+ +++R V SLAA++  +L  MDV   + N  ++E++++ QP  +     D P  V +L++SLYGLKQS R WN T+DDF++ +G  +  +D C++  RD  G+  + V L                D K  +S RF M D+G L   LG+E+
Sbjct:    8 AMESSDAAKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRD--GQDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEI 239          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM)

HSP 1 Score: 170 bits (431), Expect = 1.000e-46
Identity = 94/240 (39.17%), Postives = 143/240 (59.58%), Query Frame = 1
Query:    1 ALKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVP-FVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLV---------------VLEDLKHNISQRFRMKDLGSLPRVLGIEVR 672
            A++  +A KW+ A + E  +L+ N TW   D   LP GRKAI  +W+F+ K  + G + R+KA LVA+GFSQ    D+ ET APVA+ +++R V SLAA++  +L  MDV   + N  ++E++++ QP  +     D P  V +L++SLYGLKQS R WN T+DDF++ +G  +  +D C++  RD  G+  + V               +LE  KH +S+RF M DLG L   LG+E++
Sbjct:   30 AMESTDAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIK 262          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 179 bits (454), Expect = 3.410e-46
Identity = 99/242 (40.91%), Postives = 138/242 (57.02%), Query Frame = 1
Query:    1 ALKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLEDL-------------KHNISQRFRMKDLGSLPRVLGIEVRRGRPN 687
            A   PE  +W+ AM+EE   + + GT+  ED   LPAGR  I  KW+F +K  EDG+++RYKA LVAQG+SQ+ G D+ ET APV R+ ++R    +AA  D E+  MDV   Y N  +EEE++++QP  +   S  V    RLRK+LYGLKQS R WN   D  L  IG  +   D C++    EG  T + V ++DL             K  +   F +KDLG   +++GIE++R R N
Sbjct:  885 AEASPEWAEWKKAMDEEMSVIKEMGTYTKED---LPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVC---RLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTIITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDREN 1120          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: H3H7U0_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7U0_PHYRM)

HSP 1 Score: 172 bits (437), Expect = 1.040e-45
Identity = 95/239 (39.75%), Postives = 143/239 (59.83%), Query Frame = 1
Query:    1 ALKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVP-FVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLV---------------VLEDLKHNISQRFRMKDLGSLPRVLGIEV 669
            A++  +A KW+ A + E  +L+ N TW   D   LP GRKAI  +W+F+ K  + G + R+KA LVA+GFSQ  G D+ ET APVA+ +++R V SLAA++  +L  MDV   + N  ++E++++ QP  +     D P  V +L++SLYGLKQS R WN T+DDF++ +G  +  +D C++  RD  G+  + V               +LE  KH +S+RF M DLG L   LG+E+
Sbjct:  167 AMESSDAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEI 398          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A0C9RAA9_9HYME (POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9RAA9_9HYME)

HSP 1 Score: 176 bits (446), Expect = 1.180e-45
Identity = 94/238 (39.50%), Postives = 144/238 (60.50%), Query Frame = 1
Query:    1 ALKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLED-------------LKHNISQRFRMKDLGSLPRVLGIEVRR 675
            AL  PEA+ W+ AM+EE  +   N TW      +LP G++AI TKW+FK K   +G++ RYKA LV +G SQ +G D+ ET +PV R ++LR +F++AA+HD  +  +D    + N  ++EE+F+KQP  +S  S  V    RL KSLYGLKQ+ + WN+ L++ L+ +GL RS  D C++F   E     + + ++D             +K+ +S + +MKD+GS   VLG+ V+R
Sbjct:  239 ALNSPEADDWKRAMKEEIESHKTNRTWVLT---KLPEGKRAINTKWVFKTKRNAEGALVRYKARLVVKGCSQKQGVDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLNGELQEEVFMKQPEGYSDNSGRVC---RLLKSLYGLKQASKVWNDKLNEVLISLGLIRSEVDQCIYFCVSEYSMVYVAIYVDDVLVFSNDKKATQRIKNELSSKIKMKDMGSASSVLGMRVQR 470          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: A0A151S930_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S930_CAJCA)

HSP 1 Score: 169 bits (427), Expect = 1.840e-45
Identity = 95/233 (40.77%), Postives = 135/233 (57.94%), Query Frame = 1
Query:   22 EKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLEDL-------------KHNISQRFRMKDLGSLPRVLGIEVRRGR 681
            E WR AME E  AL  N TW      RLP G++ +  KW+++ K K DGSV RYKA LVA+GF+Q EG D+FET +PV ++ST+R + SLAA H++ L  +DVD  + +  + EE+++K PP F         V +L KSLYGLKQ+ R WN  L + L+ +   +S+TD  L   +     T LLV ++D+             K  +  +F +KDLG L   LG+E+ R +
Sbjct:   55 ECWRRAMEAELQALEKNQTWSLV---RLPEGKRPVGCKWVYRVKYKVDGSVERYKARLVAKGFTQTEGVDYFETFSPVVKLSTVRFLLSLAAAHNWFLHQLDVDNAFLHGDLFEEVYMKPPPGFK--LSHPRLVCKLHKSLYGLKQASRQWNQKLTEALISLNFIQSSTDHSLFIKKSHSSITALLVYVDDVVLTGNDMAEISAVKAYLHAQFHIKDLGPLKFFLGLEIARSQ 282          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM)

HSP 1 Score: 173 bits (438), Expect = 2.030e-45
Identity = 94/241 (39.00%), Postives = 144/241 (59.75%), Query Frame = 1
Query:    1 ALKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVP-FVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLVVLEDL-------------KHNISQRFRMKDLGSLPRVLGIEVRRGR 681
            A++  +A KW+ A + E  +L+ N TW   D   LP GRKAI  +W+F+ K  + G + R+KA LVA+GFSQ  G D+ ET APVA+ +++R V SLAA++  +L  MDV   + N  ++E++++ QP  +     D P  V +L++SLYGLKQS R WN T+DDF++ +G  +  +D C++  RD      + + ++DL             KH +S+RF M DLG L   LG+E++  R
Sbjct:  289 AMESSDAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDR 524          
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Match: H3HA00_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA00_PHYRM)

HSP 1 Score: 172 bits (437), Expect = 3.370e-45
Identity = 95/239 (39.75%), Postives = 143/239 (59.83%), Query Frame = 1
Query:    1 ALKGPEAEKWRAAMEEEWGALVDNGTWESEDPGRLPAGRKAILTKWIFKRKLKEDGSVARYKA*LVAQGFSQVEGEDFFETSAPVARMSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRDVP-FVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEGGETNLLV---------------VLEDLKHNISQRFRMKDLGSLPRVLGIEV 669
            A++  +A KW+ A + E  +L+ N TW   D   LP GRKAI  +W+F+ K  + G + R+KA LVA+GFSQ  G D+ ET APVA+ +++R V SLAA++  +L  MDV   + N  ++E++++ QP  +     D P  V +L++SLYGLKQS R WN T+DDF++ +G  +  +D C++  RD  G+  + V               +LE  KH +S+RF M DLG L   LG+E+
Sbjct:  164 AMESSDAVKWKEACDSECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEI 395          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49133.12087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182GIT5_AEDAL8.070e-5041.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5D6YB57_9STRA5.010e-4840.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H7D1_PHYRM9.370e-4738.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H8P6_PHYRM1.000e-4639.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A284QR88_ARMOS3.410e-4640.91Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
H3H7U0_PHYRM1.040e-4539.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C9RAA9_9HYME1.180e-4539.50POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus ... [more]
A0A151S930_CAJCA1.840e-4540.77Retrovirus-related Pol polyprotein from transposon... [more]
H3H9Y1_PHYRM2.030e-4539.00CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
H3HA00_PHYRM3.370e-4539.75Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49133contigH-paniculata_contig49133:95..1372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue1.8e-19
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons4
Model size1097
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49133.12087.1prot_H-paniculata_contig49133.12087.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49133 634..1111 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930453.1765308-UTR-H-paniculata_contig49133:94..1861622930453.1765308-UTR-H-paniculata_contig49133:94..186Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49133 95..186 -
1691481298.4288743-UTR-H-paniculata_contig49133:94..1861691481298.4288743-UTR-H-paniculata_contig49133:94..186Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49133 95..186 -
1622930453.2242727-UTR-H-paniculata_contig49133:240..4131622930453.2242727-UTR-H-paniculata_contig49133:240..413Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49133 241..413 -
1691481298.4406855-UTR-H-paniculata_contig49133:240..4131691481298.4406855-UTR-H-paniculata_contig49133:240..413Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49133 241..413 -
1622930453.2515607-UTR-H-paniculata_contig49133:497..6331622930453.2515607-UTR-H-paniculata_contig49133:497..633Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49133 498..633 -
1691481298.4501612-UTR-H-paniculata_contig49133:497..6331691481298.4501612-UTR-H-paniculata_contig49133:497..633Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49133 498..633 -
1622930453.297286-UTR-H-paniculata_contig49133:1111..13721622930453.297286-UTR-H-paniculata_contig49133:1111..1372Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49133 1112..1372 -
1691481298.4860706-UTR-H-paniculata_contig49133:1111..13721691481298.4860706-UTR-H-paniculata_contig49133:1111..1372Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49133 1112..1372 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930453.2672-CDS-H-paniculata_contig49133:633..7431622930453.2672-CDS-H-paniculata_contig49133:633..743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49133 634..743 -
1691481298.4616227-CDS-H-paniculata_contig49133:633..7431691481298.4616227-CDS-H-paniculata_contig49133:633..743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49133 634..743 -
1622930453.282316-CDS-H-paniculata_contig49133:786..11111622930453.282316-CDS-H-paniculata_contig49133:786..1111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49133 787..1111 -
1691481298.4732087-CDS-H-paniculata_contig49133:786..11111691481298.4732087-CDS-H-paniculata_contig49133:786..1111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49133 787..1111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49133.12087.1

>prot_H-paniculata_contig49133.12087.1 ID=prot_H-paniculata_contig49133.12087.1|Name=mRNA_H-paniculata_contig49133.12087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
MSTLRTVFSLAAEHDFELEGMDVDAVYWNAPVEEELFVKQPPEFSPFSRD
VPFVRRLRKSLYGLKQSDRNWNNTLDDFLVGIGLDRSTTDSCLHFSRDEG
GETNLLVVLEDLKHNISQRFRMKDLGSLPRVLGIEVRRGRPNVP*
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mRNA from alignment at H-paniculata_contig49133:95..1372-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49133.12087.1 ID=mRNA_H-paniculata_contig49133.12087.1|Name=mRNA_H-paniculata_contig49133.12087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig49133:95..1372- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATTAAAGGGTCCAGAGGCGGAAAAATGGCGCGCGGCAATGGAGGAAGA ATGGGGGGCGTTGGTGGACAATGGGACATGGGAAAGCGAAGACCCGGGGA GGTTACCCGCAGGGCGGAAGGCGATTCTTACGAAATGGATTTTCAAGCGG AAACTGAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGTGACTGGTGGC TCAAGGTTTTTCACAGGTGGAGGGTGAAGATTTCTTTGAAACCAGTGCCC CCGTAGCTCGCATGTCGACGTTACGTACTGTTTTTAGCCTGGCCGCCGAA CATGACTTCGAATTAGAAGGCATGGACGTAGATGCGGTGTATTGGAACGC CCCGGTAGAAGAAGAGCTGTTTGTTAAGCAACCCCCCGAGTTTTCCCCTT TCTCCCGAGACGTACCATTTGTGCGCCGCCTGCGTAAAAGCCTGTACGGC CTCAAGCAGAGTGACCGAAACTGGAATAACACTCTTGACGATTTTCTTGT TGGGATAGGACTCGACCGTTCCACTACCGACTCATGCCTGCACTTTTCCC GCGACGAAGGGGGAGAGACAAACCTTCTGGTTGTCCGTGTTTGTTGACGA CCTGGTCATTGCTGGTCGTCGTGAGAAAGTAGAGGATTTGAAGCATAACA TCAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCCCGCGCGTGTTG GGAATAGAAGTACGACGTGGCCGCCCTAACGTACCATGACCATCTCGCAG GGTAGCTACATCCGCGAGGTGCTAAACAATTACGGTTTTGACGAGTGTCG AAAAGTACCCACCCCTGTAGAGGGAAAAGTGAAGATTCCGGCACCCGGGT CGGCCGACAAGCCCTCCGAACCGAAGTCACTTGGAGCTGTACCTTCGAAC ATAGGCGCAGGAGTACAAAAAAACAGCAGACGGAGAAGTGGCATTTAAAC TGAATACAGAGGCACGGTAGGATCACTCATGTACGCCTCGACAGGAAGTA GACCTGATATAGTATACGCGGTACACCAAGCAGCACGTCGTATGCAGGGC CCATGTCGAGAAGACTTCAATACATGCAAGCGCGTATTTCGTTATCTCAG TACTGTGCCTGACTTCGGCATTACGTTCGGCGGTAAGAGTAGTGGTCACG GTCTGGAAGGATTCGTTGATGCCGATTGGGAGAAAGATGTCGAGGACCGA AAGTCCACAACAGGATATGTTTTCAAGCTGAACGGTGGTGCAATGAGCTG GTGCTCTAGGAAGAAACAGTTAGTCACG
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Coding sequence (CDS) from alignment at H-paniculata_contig49133:95..1372-

>mRNA_H-paniculata_contig49133.12087.1 ID=mRNA_H-paniculata_contig49133.12087.1|Name=mRNA_H-paniculata_contig49133.12087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig49133:95..1372- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGTTACGTACTGTTTTTAGCCTGGCCGCCGAACATGACTTCGA
ATTAGAAGGCATGGACGTAGATGCGGTGTATTGGAACGCCCCGGTAGAAG
AAGAGCTGTTTGTTAAGCAACCCCCCGAGTTTTCCCCTTTCTCCCGAGAC
GTACCATTTGTGCGCCGCCTGCGTAAAAGCCTGTACGGCCTCAAGCAGAG
TGACCGAAACTGGAATAACACTCTTGACGATTTTCTTGTTGGGATAGGAC
TCGACCGTTCCACTACCGACTCATGCCTGCACTTTTCCCGCGACGAAGGG
GGAGAGACAAACCTTCTGGTTGTCCATGTCGACGTTACGTACTGTTTTTA
GCCTGGCCGCCGAACATGACTTCGAATTAGAAGGCATGGACGTAGATGCG
GTGTATTGGAACGCCCCGGTAGAAGAAGAGCTGTTTGTTAAGCAACCCCC
CGAGTTTTCCCCTTTCTCCCGAGACGTACCATTTGTGCGCCGCCTGCGTA
AAAGCCTGTACGGCCTCAAGCAGAGTGACCGAAACTGGAATAACACTCTT
GACGATTTTCTTGTTGGGATAGGACTCGACCGTTCCACTACCGACTCATG
CCTGCACTTTTCCCGCGACGAAGGGGGAGAGACAAACCTTCTGGTTGTCC
TAGAGGATTTGAAGCATAACATCAGTCAGCGTTTTAGGATGAAAGACTTG
GGCTCTCTCCCGCGCGTGTTGGGAATAGAAGTACGACGTGGCCGCCCTAA
CGTACCATGATAGAGGATTTGAAGCATAACATCAGTCAGCGTTTTAGGAT
GAAAGACTTGGGCTCTCTCCCGCGCGTGTTGGGAATAGAAGTACGACGTG
GCCGCCCTAACGTACCATGA
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