mRNA_H-paniculata_contig49111.12085.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A6S7HU51_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HU51_PARCT) HSP 1 Score: 124 bits (310), Expect = 9.630e-29 Identity = 73/202 (36.14%), Postives = 121/202 (59.90%), Query Frame = 3
Query: 480 GEPKSVAEAFKGPETEKWRAAMEEEWGALMKNGTWESEDPGSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAG-RREKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTEYRDMVGSLMYASTGTRPD 1082
G P++ EA P+ +W AM+EE +L +N T+E +LP GRNWN L + L G R+ D C+Y + + ++V V+VDDL+IA + ++EFK ++ +F+MKDLG ++ L ++ ++ + G I ++Q +I + L+RFG +C+ TP E +++ + G N+ +YR+M+GSL+YA T TRPD
Sbjct: 67 GLPQNYTEAMGSPQAREWEKAMKEEISSLKENDTYELS---TLPEGRNWNILLHEHLANDGFVRNHADHCVYKKQVD--DKIVIVIVWVDDLIIASDSMQLMEEFKESMKIQFKMKDLGRITFFLGMDFKQSK--GEIKMNQKRFILKILERFGMIDCKPRLTPSEQRLEFNC---GELSNARQYREMIGSLIYAMTCTRPD 258
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR) HSP 1 Score: 126 bits (316), Expect = 4.780e-28 Identity = 74/171 (43.27%), Postives = 96/171 (56.14%), Query Frame = 3
Query: 600 GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTE---------YRDMVGSLMYASTGTRPD 1082
G AGR WN T D L +G R + CLY GEGG+ LV VYVDDL++A R +DE K ++ F+M+DLGP S VL I++RRDR I +SQ YI LKR G ++C+ TP+ + +++A D TE Y +VGSLMYA GTRPD
Sbjct: 1152 GLKQAGRTWNKTFDSSLKDLGFTRLDAETCLYVMRGEGGKLCFLV-VYVDDLILAATSRAYMDEIKTKLAATFKMRDLGPASYVLGIQIRRDRRKRIIGLSQRQYIDTVLKRCGMEDCKPVFTPLSTQNRLTADDPINNDTLTEMTINNKTVSYATVVGSLMYAMMGTRPD 1321
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A087T1Z9_STEMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087T1Z9_STEMI) HSP 1 Score: 125 bits (315), Expect = 5.940e-28 Identity = 68/167 (40.72%), Postives = 101/167 (60.48%), Query Frame = 3
Query: 600 GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGG----NSTE--YRDMVGSLMYASTGTRPD 1082
G +GR WN L+DFL+ GL+RS C+YF H E N+++ +YVDDL+I G +++EFK +I +RF +KDLGP S++L +++ ++ NG+ T+ Q YI E L+ F E + A TP++ +K D + NS E YR +GSL+Y S GT PD
Sbjct: 831 GLRQSGRAWNTCLNDFLIQYGLKRSSAKPCIYFCH----EKNIIIGIYVDDLLIVGNMAEINEFKGSIKKRFSVKDLGPASQILSMQICKEE-NGSFTLDQIVYILEILETFKMTEAKCASTPLDFSIKYKKVDEQQWEEIKENSKEIPYRQAIGSLLYMSCGTHPD 992
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU) HSP 1 Score: 124 bits (312), Expect = 1.590e-27 Identity = 72/171 (42.11%), Postives = 95/171 (55.56%), Query Frame = 3
Query: 600 GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGR-REKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRG---------GNSTEYRDMVGSLMYASTGTRPD 1082
G AGR WN TLD L G+G R ++ CLY + G+ LV VYVDDL++A R +DE K ++ +F+M+DLG S +L I +RRDRP I +SQ YI L R+G +C+ TP+ VK SA D G S Y ++GS+MYA GTRPD
Sbjct: 1132 GLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFLV-VYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPD 1301
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: Q10DK8_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10DK8_ORYSJ) HSP 1 Score: 117 bits (294), Expect = 7.360e-26 Identity = 74/202 (36.63%), Postives = 114/202 (56.44%), Query Frame = 3
Query: 486 PKSVAEAFKGPETEKWRAAMEEEWGALMKNGTWE-SEDP-GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTEYRDMVGSLMYASTGTRPD 1082
PKS++EA+ P+ + W+ A+ E +++ NGTWE +E P G G W L G + D C+Y+ HG GGE +L+ +YVDD++I G E ++E K +SQ F MKDLG +L I++ +R IT+ Q Y+ + L RFG+ + + +PTP + + + R N EY ++GSLMY ++ TRPD
Sbjct: 146 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKHVGCKW--VFKKKLRPNGFAVNKADKCVYYRHG-GGE-GVLLCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVGDVILNIKL--NRCENVITLLQSHYVEKILNRFGYIDSKPSPTPYDPNLLLRKKKR-IARNQLEYSQIIGSLMYLASATRPD 340
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA) HSP 1 Score: 117 bits (292), Expect = 6.290e-25 Identity = 65/159 (40.88%), Postives = 89/159 (55.97%), Query Frame = 3
Query: 618 RNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTE---YRDMVGSLMYASTGTRPD 1082
R WN + F+ G RS D C+Y EGG LL+ YVDD++IA + ++D K +S F MKD+G SR+L I+++RDR G + +SQ SY+ + +KRF E + TP+ G K+SA TE Y VGS+MYA GTRPD
Sbjct: 997 RLWNKKFNQFITGEKFIRSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKYPYSSAVGSVMYAMIGTRPD 1153
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A0A9XEM5_LYGHE (Copia protein (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XEM5_LYGHE) HSP 1 Score: 115 bits (288), Expect = 9.330e-25 Identity = 68/162 (41.98%), Postives = 96/162 (59.26%), Query Frame = 3
Query: 600 GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVI-AGRREKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTEYRDMVGSLMYASTGTRPD 1082
G AGR W LD L + + S D C Y GEGGE +L+AVYVDDLVI + REK+DE K ++S+ F M+D+G ++ L IE RD+ G + +SQ YI + LK F ++ + TP+E +K+ P G + Y+ ++GSLMY +T TRPD
Sbjct: 174 GLKQAGRQWFKKLDARLKELKFQPSFADPCFYI-RGEGGE-KILIAVYVDDLVILSANREKLDELKEDLSRTFEMRDIGKINYCLGIEFSRDKDGGVL-MSQEKYINKLLKTFRMEKSKTMRTPMEANLKLEKPLEGVCPD-VPYQSLIGSLMYLATATRPD 331
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT) HSP 1 Score: 114 bits (286), Expect = 1.080e-24 Identity = 63/162 (38.89%), Postives = 96/162 (59.26%), Query Frame = 3
Query: 600 GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTEYRDMVGSLMYASTGTRPD 1082
G +GRNWN LD++L+ G R+ D C+Y + GE ++V ++VDDL+IA +K+ +FK N+ +FRMKDLG +S L I ++ NG I ++Q YI++ L RFG +C+ TP E + + + + YR++VGSL+Y T TRPD
Sbjct: 297 GLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQV--DPRRYREIVGSLIYLMTCTRPD 452
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: A0A2J7RGU0_9NEOP (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RGU0_9NEOP) HSP 1 Score: 113 bits (283), Expect = 1.220e-24 Identity = 62/158 (39.24%), Postives = 94/158 (59.49%), Query Frame = 3
Query: 612 AGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNG-TITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTEYRDMVGSLMYASTGTRPD 1082
+G++WN+T+ V GL++ D C++F+ ++VA+YVDD++I G R+ V++ K +SQR +KDLGP+S L I V DRPNG I I Q +Y+ E LK FG +C+G TP + + D + + +Y+ VG L Y +T TRPD
Sbjct: 135 SGKDWNDTITFIFVSFGLKQCTKDPCVFFND------RIIVAIYVDDMIICGTRKDVNDCKRQLSQRLNVKDLGPVSNFLGINV--DRPNGYVIKIHQENYVNETLKTFGMLDCKGCVTPRDPNYN-NFLDGDKPFDEIQYKAAVGRLQYIATCTRPD 283
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Match: UPI00142E19AD (uncharacterized protein LOC103874474 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E19AD) HSP 1 Score: 115 bits (289), Expect = 1.540e-24 Identity = 63/165 (38.18%), Postives = 94/165 (56.97%), Query Frame = 3
Query: 600 GSLPAGRNWNNTLDDFLVGIGLERSITDLCLYFSHGEGGETNLLVAVYVDDLVIAGRRE-KVDEFKHNISQRFRMKDLGPLSRVLEIEVRRDRPNGTITISQGSYIREALKRFGFDECRGAPTPVEGKVKISAPDRGRGGNSTE---YRDMVGSLMYASTGTRPD 1082
G A R WN + FLV G RS +DLC+Y G E + + +YVDD+++A +++ ++ + K +S F MKD+GP SR+L I+++RDR T+ + Q YI++ LKRF E + TP+ K+++ TE Y VGS+MYA GTRPD
Sbjct: 988 GLKQAPRQWNKRFNSFLVSQGFIRSDSDLCVYIKE-VGPEDYVYLLLYVDDMLLAAKQKSEIQKLKDVLSSEFEMKDMGPASRILGIDIKRDREQDTLKLCQSGYIQKVLKRFKMSESKAVATPMGSHFKLASVKNADERIDTEKVPYLSAVGSVMYAMVGTRPD 1151 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49111.12085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig49111.12085.1 >prot_H-paniculata_contig49111.12085.1 ID=prot_H-paniculata_contig49111.12085.1|Name=mRNA_H-paniculata_contig49111.12085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp MEEEWGALMKNGTWESEDPGSLPAGRNWNNTLDDFLVGIGLERSITDLCLback to top mRNA from alignment at H-paniculata_contig49111:79..1373+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig49111.12085.1 ID=mRNA_H-paniculata_contig49111.12085.1|Name=mRNA_H-paniculata_contig49111.12085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1295bp|location=Sequence derived from alignment at H-paniculata_contig49111:79..1373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig49111:79..1373+ >mRNA_H-paniculata_contig49111.12085.1 ID=mRNA_H-paniculata_contig49111.12085.1|Name=mRNA_H-paniculata_contig49111.12085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig49111:79..1373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |