mRNA_H-paniculata_contig48819.12022.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48819.12022.1
Unique NamemRNA_H-paniculata_contig48819.12022.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.140e-22
Identity = 59/143 (41.26%), Postives = 81/143 (56.64%), Query Frame = 1
Query:    1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPK-GLKIGAIRTDNGGGFDGDF--YLDEHGINHELTSPDTPQYNDVAERRLGLLWEKIIA 420
            C GCS +K     + K TD RA     RL+++L G M+  S+GG+ Y +II DD +R+  V  +K KSD+  A + Y+A+Y       ++   RTD GG F G F       GI  E T P+TP+YN VAER LGLL +  +A
Sbjct:  169 CLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALA 311          
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A1I9RYX3_COCGR (Integrase (Fragment) n=1 Tax=Coccinia grandis TaxID=387127 RepID=A0A1I9RYX3_COCGR)

HSP 1 Score: 95.1 bits (235), Expect = 1.800e-21
Identity = 53/139 (38.13%), Postives = 74/139 (53.24%), Query Frame = 1
Query:    1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGFDGDFYLD---EHGINHELTSPDTPQYNDVAERRLGLLWE 408
            C  C   K  + + + K     T   + L++DL GP R+ S GG+ Y  +IVDD+SRF  V +IK K ++     S+       KG  I  IR+D+GG FD D + D   E+G +H  +SP TPQ N V ER+   L E
Sbjct:   54 CDACQMGKQTKSSFKSKNVISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDDFSRFTWVLMIKHKDEALKNFISFTKRVQNEKGFFISKIRSDHGGEFDNDAFKDFCEENGFSHNFSSPRTPQQNGVVERKNRTLQE 192          
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A8J5ESC8_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5ESC8_ZINOF)

HSP 1 Score: 96.7 bits (239), Expect = 1.660e-20
Identity = 56/139 (40.29%), Postives = 77/139 (55.40%), Query Frame = 1
Query:    1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGFDGDFYLD---EHGINHELTSPDTPQYNDVAERRLGLLWE 408
            C+GC   K+HR      T  R T   ER++ DL GP + TS    +Y+++ VDDYSRF  V  +K KS++      +        G KI  +RTDNGG F  + +L    ++GI  EL+ PDTPQ N VAER++  L E
Sbjct:  386 CEGCQFGKSHRLPFENSTS-RCTTPLERIHSDLMGPTKTTSYSEGNYMLLFVDDYSRFTWVYFVKHKSETFSIFLDFKKIVEGELGRKIKTLRTDNGGEFCSNEFLSFCRDNGIKRELSCPDTPQQNGVAERKIRHLVE 523          
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A5N6NZN2_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NZN2_9ASTR)

HSP 1 Score: 95.9 bits (237), Expect = 3.080e-20
Identity = 50/133 (37.59%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGFDGDFYL---DEHGINHELTSPDTPQYNDVAERR 390
            C+GC  AK  R    ++T  RA+   E ++ DL GP+  +++GG+ +  ++VDDYSR+  V ++K K+++    + + A       LK+G +RTD GG F    +L   ++HGI  +LT+P TPQ N V ERR
Sbjct:  503 CEGCMVAKQTRLPFPQETTWRASKPLELIHADLCGPITPSTMGGNKFFFLLVDDYSRYMWVYLLKSKNEAFLNFKKFKATVEKESELKVGTLRTDRGGEFVSKEFLQFCEDHGIKRQLTAPYTPQQNGVVERR 635          
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: UPI001CC6DD69 (uncharacterized protein LOC110630572 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC6DD69)

HSP 1 Score: 95.5 bits (236), Expect = 4.380e-20
Identity = 53/146 (36.30%), Postives = 82/146 (56.16%), Query Frame = 1
Query:    1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGF---DGDFYLDEHGINHELTSPDTPQYNDVAERRLGLLWEKIIALMQ 429
            C+ C + K HR +  K   +RA+  AE ++ D+ GPMR +SL GS Y ++ VDDYSR   V  +K KS+  P  + + +      G  +  +RTD GG F   + D   ++ GI  +LT+  TPQ N VAER++  L E   ++++
Sbjct:  586 CESCVSGKHHRDSFAKGKSRRASQAAELIHADVCGPMRTSSLNGSRYFVVFVDDYSRMTWVFFLKNKSEVLPTFKKFRSLIEKQSGNAVKILRTDRGGEFVSAEFDKLCEDFGIQRQLTASYTPQQNGVAERKIRSLVEMAKSMLK 731          
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.680e-20
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 1
Query:   40 VRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGL--KIGAIRTDNGGGFDGDFYLDE-------HGINHELTSPDTPQYNDVAERRLGLLWEKIIA 420
            V+K T  RA  +  R+Y+DL G M+  S+GG+ Y +II DD+SR+  V  +K KS +    + + A++ T KG+  ++   RTD GG F G F   +       HGI  E T P+TP+YN VAER LGL+ +  +A
Sbjct:    9 VQKSTSTRAVKMLSRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSGAAVGFEKFPADHRT-KGVPREVYIARTDGGGEFQGQFAEGQFAEVCRRHGIKQEFTPPNTPKYNGVAERALGLITDAALA 143          
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A443N8T5_9MAGN (Integrase, catalytic core n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443N8T5_9MAGN)

HSP 1 Score: 95.1 bits (235), Expect = 5.900e-20
Identity = 54/137 (39.42%), Postives = 78/137 (56.93%), Query Frame = 1
Query:    1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGFDGDFYLD---EHGINHELTSPDTPQYNDVAERRLGLL 402
            C GC   K+HR      +  RA+ V + ++ DL GP +  S     YVMI+VDD+SRF  V  ++ KS++      +  +      L+I  +RTDNGG +  D +L+   EHGI H++T P+TPQ N VAER+L  L
Sbjct:  502 CPGCQYRKSHRLPF-PTSKNRASTVLQLVHSDLMGPTKTLSYSSFRYVMILVDDFSRFTWVYFLENKSEAFSKFVQFKEQVEKEFELQIKCLRTDNGGEYMSDQFLNYCKEHGIQHQMTCPETPQQNGVAERKLAHL 637          
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A8J5GTW8_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GTW8_ZINOF)

HSP 1 Score: 95.1 bits (235), Expect = 5.920e-20
Identity = 55/139 (39.57%), Postives = 79/139 (56.83%), Query Frame = 1
Query:    1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGFDGDFYLD---EHGINHELTSPDTPQYNDVAERRLGLLWE 408
            C+GC   K+HR   +  T +  T + ER++ DL GP + TS    +Y+++ VDDYSRF  V  +K KS++      +        G KI  +RTDNGG F  + +L    ++GI  EL+ PDTPQ N VAER++  L E
Sbjct:  702 CEGCQFGKSHRLPFQNSTSRCMTPL-ERIHSDLMGPTKTTSYSEGNYMLLFVDDYSRFTWVYFVKHKSETFSIFLDFKKIVEGELGRKIKTLRTDNGGEFCSNEFLSFCRDNGIKRELSCPDTPQQNGVAERKIRHLVE 839          
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A6D2KMT4_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT4_9BRAS)

HSP 1 Score: 94.4 bits (233), Expect = 1.050e-19
Identity = 55/139 (39.57%), Postives = 75/139 (53.96%), Query Frame = 1
Query:    1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGFDGDFYLD---EHGINHELTSPDTPQYNDVAERRLGLLWE 408
            C+GC   K+HR      T  R     ER++ DL GP R +S  G  Y+++ VDDYSR+  V  +K+KS+     Q +        G KI  +RTDNGG F  + +L    +HGI  E + P TPQ N VAER++  L E
Sbjct:  476 CEGCQYGKSHRLPFDNSTS-RCNAPLERIHSDLMGPTRTSSYSGFRYMLLFVDDYSRYTWVYFVKEKSEVFSKFQEFKVTVEGELGRKIKTLRTDNGGEFMSNEFLSFCRKHGIKREFSCPYTPQQNGVAERKIRHLSE 613          
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A6D2JZV9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JZV9_9BRAS)

HSP 1 Score: 94.4 bits (233), Expect = 1.060e-19
Identity = 55/139 (39.57%), Postives = 75/139 (53.96%), Query Frame = 1
Query:    1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGFDGDFYLD---EHGINHELTSPDTPQYNDVAERRLGLLWE 408
            C+GC   K+HR      T  R     ER++ DL GP R +S  G  Y+++ VDDYSR+  V  +K+KS+     Q +        G KI  +RTDNGG F  + +L    +HGI  E + P TPQ N VAER++  L E
Sbjct:  162 CEGCQYGKSHRLPFDNSTS-RCNAPLERIHSDLMGPTRTSSYSGFRYMLLFVDDYSRYTWVYFVKEKSEVFSKFQEFKVTVEGELGRKIKTLRTDNGGEFMSNEFLSFCRKHGIKREFSCPYTPQQNGVAERKIRHLSE 299          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE1.140e-2241.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A1I9RYX3_COCGR1.800e-2138.13Integrase (Fragment) n=1 Tax=Coccinia grandis TaxI... [more]
A0A8J5ESC8_ZINOF1.660e-2040.29Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A5N6NZN2_9ASTR3.080e-2037.59Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
UPI001CC6DD694.380e-2036.30uncharacterized protein LOC110630572 n=1 Tax=Manih... [more]
A0A6H5K293_9PHAE5.680e-2040.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A443N8T5_9MAGN5.900e-2039.42Integrase, catalytic core n=1 Tax=Cinnamomum micra... [more]
A0A8J5GTW8_ZINOF5.920e-2039.57Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A6D2KMT4_9BRAS1.050e-1939.57Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2JZV9_9BRAS1.060e-1939.57Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48819contigH-paniculata_contig48819:694..1125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score101.3
Seed ortholog evalue3.9e-19
Seed eggNOG ortholog28532.XP_010520710.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37SNQ@33090,3GHRQ@35493,3HVU8@3699,COG2801@1,KOG0017@2759,KOG1334@1,KOG1334@2759
COG Functional cat.L
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930442.910257-CDS-H-paniculata_contig48819:693..11251622930442.910257-CDS-H-paniculata_contig48819:693..1125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48819 694..1125 +
1691481294.4587703-CDS-H-paniculata_contig48819:693..11251691481294.4587703-CDS-H-paniculata_contig48819:693..1125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48819 694..1125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48819.12022.1prot_H-paniculata_contig48819.12022.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48819 694..1125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48819.12022.1

>prot_H-paniculata_contig48819.12022.1 ID=prot_H-paniculata_contig48819.12022.1|Name=mRNA_H-paniculata_contig48819.12022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMI
IVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGF
DGDFYLDEHGINHELTSPDTPQYNDVAERRLGLLWEKIIALMQD
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mRNA from alignment at H-paniculata_contig48819:694..1125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48819.12022.1 ID=mRNA_H-paniculata_contig48819.12022.1|Name=mRNA_H-paniculata_contig48819.12022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at H-paniculata_contig48819:694..1125+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAAAGGATGCTCCACTGCAAAGGCTCACCGATTTGCCGTGCGAAAAAA GACCGACAAGCGGGCCACATGGGTAGCGGAGCGCCTGTACGTCGACCTGA GCGGACCCATGCGAGTAACCAGCTTGGGCGGTAGCTCGTATGTGATGATC ATCGTCGACGACTACTCACGGTTCCAGGCTGTCAAGGTCATCAAGAAGAA GAGTGATTCCACTCCAGCTCTCCAGAGCTACATCGCCGAATACATGACGC CAAAGGGACTCAAGATTGGCGCCATTCGTACGGACAACGGCGGGGGCTTC GATGGCGATTTTTACCTGGACGAGCACGGCATTAACCACGAGCTCACATC CCCGGACACGCCGCAATACAACGACGTTGCCGAAAGGCGGCTGGGTCTAC TCTGGGAGAAAATAATCGCGTTGATGCAGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig48819:694..1125+

>mRNA_H-paniculata_contig48819.12022.1 ID=mRNA_H-paniculata_contig48819.12022.1|Name=mRNA_H-paniculata_contig48819.12022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig48819:694..1125+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAAAGGATGCTCCACTGCAAAGGCTCACCGATTTGCCGTGCGAAAAAA
GACCGACAAGCGGGCCACATGGGTAGCGGAGCGCCTGTACGTCGACCTGA
GCGGACCCATGCGAGTAACCAGCTTGGGCGGTAGCTCGTATGTGATGATC
ATCGTCGACGACTACTCACGGTTCCAGGCTGTCAAGGTCATCAAGAAGAA
GAGTGATTCCACTCCAGCTCTCCAGAGCTACATCGCCGAATACATGACGC
CAAAGGGACTCAAGATTGGCGCCATTCGTACGGACAACGGCGGGGGCTTC
GATGGCGATTTTTACCTGGACGAGCACGGCATTAACCACGAGCTCACATC
CCCGGACACGCCGCAATACAACGACGTTGCCGAAAGGCGGCTGGGTCTAC
TCTGGGAGAAAATAATCGCGTTGATGCAGGATTGCAAAGGATGCTCCACT
GCAAAGGCTCACCGATTTGCCGTGCGAAAAAAGACCGACAAGCGGGCCAC
ATGGGTAGCGGAGCGCCTGTACGTCGACCTGAGCGGACCCATGCGAGTAA
CCAGCTTGGGCGGTAGCTCGTATGTGATGATCATCGTCGACGACTACTCA
CGGTTCCAGGCTGTCAAGGTCATCAAGAAGAAGAGTGATTCCACTCCAGC
TCTCCAGAGCTACATCGCCGAATACATGACGCCAAAGGGACTCAAGATTG
GCGCCATTCGTACGGACAACGGCGGGGGCTTCGATGGCGATTTTTACCTG
GACGAGCACGGCATTAACCACGAGCTCACATCCCCGGACACGCCGCAATA
CAACGACGTTGCCGAAAGGCGGCTGGGTCTACTCTGGGAGAAAATAATCG
CGTTGATGCAGGAT
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