mRNA_H-paniculata_contig48819.12022.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.140e-22 Identity = 59/143 (41.26%), Postives = 81/143 (56.64%), Query Frame = 1
Query: 1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPK-GLKIGAIRTDNGGGFDGDF--YLDEHGINHELTSPDTPQYNDVAERRLGLLWEKIIA 420
C GCS +K + K TD RA RL+++L G M+ S+GG+ Y +II DD +R+ V +K KSD+ A + Y+A+Y ++ RTD GG F G F GI E T P+TP+YN VAER LGLL + +A
Sbjct: 169 CLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALA 311
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A1I9RYX3_COCGR (Integrase (Fragment) n=1 Tax=Coccinia grandis TaxID=387127 RepID=A0A1I9RYX3_COCGR) HSP 1 Score: 95.1 bits (235), Expect = 1.800e-21 Identity = 53/139 (38.13%), Postives = 74/139 (53.24%), Query Frame = 1
Query: 1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGFDGDFYLD---EHGINHELTSPDTPQYNDVAERRLGLLWE 408
C C K + + + K T + L++DL GP R+ S GG+ Y +IVDD+SRF V +IK K ++ S+ KG I IR+D+GG FD D + D E+G +H +SP TPQ N V ER+ L E
Sbjct: 54 CDACQMGKQTKSSFKSKNVISTTRPLQLLHMDLFGPSRIASFGGNYYAFVIVDDFSRFTWVLMIKHKDEALKNFISFTKRVQNEKGFFISKIRSDHGGEFDNDAFKDFCEENGFSHNFSSPRTPQQNGVVERKNRTLQE 192
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A8J5ESC8_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5ESC8_ZINOF) HSP 1 Score: 96.7 bits (239), Expect = 1.660e-20 Identity = 56/139 (40.29%), Postives = 77/139 (55.40%), Query Frame = 1
Query: 1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGFDGDFYLD---EHGINHELTSPDTPQYNDVAERRLGLLWE 408
C+GC K+HR T R T ER++ DL GP + TS +Y+++ VDDYSRF V +K KS++ + G KI +RTDNGG F + +L ++GI EL+ PDTPQ N VAER++ L E
Sbjct: 386 CEGCQFGKSHRLPFENSTS-RCTTPLERIHSDLMGPTKTTSYSEGNYMLLFVDDYSRFTWVYFVKHKSETFSIFLDFKKIVEGELGRKIKTLRTDNGGEFCSNEFLSFCRDNGIKRELSCPDTPQQNGVAERKIRHLVE 523
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A5N6NZN2_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NZN2_9ASTR) HSP 1 Score: 95.9 bits (237), Expect = 3.080e-20 Identity = 50/133 (37.59%), Postives = 79/133 (59.40%), Query Frame = 1
Query: 1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGFDGDFYL---DEHGINHELTSPDTPQYNDVAERR 390
C+GC AK R ++T RA+ E ++ DL GP+ +++GG+ + ++VDDYSR+ V ++K K+++ + + A LK+G +RTD GG F +L ++HGI +LT+P TPQ N V ERR
Sbjct: 503 CEGCMVAKQTRLPFPQETTWRASKPLELIHADLCGPITPSTMGGNKFFFLLVDDYSRYMWVYLLKSKNEAFLNFKKFKATVEKESELKVGTLRTDRGGEFVSKEFLQFCEDHGIKRQLTAPYTPQQNGVVERR 635
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: UPI001CC6DD69 (uncharacterized protein LOC110630572 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC6DD69) HSP 1 Score: 95.5 bits (236), Expect = 4.380e-20 Identity = 53/146 (36.30%), Postives = 82/146 (56.16%), Query Frame = 1
Query: 1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGF---DGDFYLDEHGINHELTSPDTPQYNDVAERRLGLLWEKIIALMQ 429
C+ C + K HR + K +RA+ AE ++ D+ GPMR +SL GS Y ++ VDDYSR V +K KS+ P + + + G + +RTD GG F + D ++ GI +LT+ TPQ N VAER++ L E ++++
Sbjct: 586 CESCVSGKHHRDSFAKGKSRRASQAAELIHADVCGPMRTSSLNGSRYFVVFVDDYSRMTWVFFLKNKSEVLPTFKKFRSLIEKQSGNAVKILRTDRGGEFVSAEFDKLCEDFGIQRQLTASYTPQQNGVAERKIRSLVEMAKSMLK 731
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 5.680e-20 Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 1
Query: 40 VRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGL--KIGAIRTDNGGGFDGDFYLDE-------HGINHELTSPDTPQYNDVAERRLGLLWEKIIA 420
V+K T RA + R+Y+DL G M+ S+GG+ Y +II DD+SR+ V +K KS + + + A++ T KG+ ++ RTD GG F G F + HGI E T P+TP+YN VAER LGL+ + +A
Sbjct: 9 VQKSTSTRAVKMLSRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSGAAVGFEKFPADHRT-KGVPREVYIARTDGGGEFQGQFAEGQFAEVCRRHGIKQEFTPPNTPKYNGVAERALGLITDAALA 143
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A443N8T5_9MAGN (Integrase, catalytic core n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443N8T5_9MAGN) HSP 1 Score: 95.1 bits (235), Expect = 5.900e-20 Identity = 54/137 (39.42%), Postives = 78/137 (56.93%), Query Frame = 1
Query: 1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGFDGDFYLD---EHGINHELTSPDTPQYNDVAERRLGLL 402
C GC K+HR + RA+ V + ++ DL GP + S YVMI+VDD+SRF V ++ KS++ + + L+I +RTDNGG + D +L+ EHGI H++T P+TPQ N VAER+L L
Sbjct: 502 CPGCQYRKSHRLPF-PTSKNRASTVLQLVHSDLMGPTKTLSYSSFRYVMILVDDFSRFTWVYFLENKSEAFSKFVQFKEQVEKEFELQIKCLRTDNGGEYMSDQFLNYCKEHGIQHQMTCPETPQQNGVAERKLAHL 637
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A8J5GTW8_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GTW8_ZINOF) HSP 1 Score: 95.1 bits (235), Expect = 5.920e-20 Identity = 55/139 (39.57%), Postives = 79/139 (56.83%), Query Frame = 1
Query: 1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGFDGDFYLD---EHGINHELTSPDTPQYNDVAERRLGLLWE 408
C+GC K+HR + T + T + ER++ DL GP + TS +Y+++ VDDYSRF V +K KS++ + G KI +RTDNGG F + +L ++GI EL+ PDTPQ N VAER++ L E
Sbjct: 702 CEGCQFGKSHRLPFQNSTSRCMTPL-ERIHSDLMGPTKTTSYSEGNYMLLFVDDYSRFTWVYFVKHKSETFSIFLDFKKIVEGELGRKIKTLRTDNGGEFCSNEFLSFCRDNGIKRELSCPDTPQQNGVAERKIRHLVE 839
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A6D2KMT4_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KMT4_9BRAS) HSP 1 Score: 94.4 bits (233), Expect = 1.050e-19 Identity = 55/139 (39.57%), Postives = 75/139 (53.96%), Query Frame = 1
Query: 1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGFDGDFYLD---EHGINHELTSPDTPQYNDVAERRLGLLWE 408
C+GC K+HR T R ER++ DL GP R +S G Y+++ VDDYSR+ V +K+KS+ Q + G KI +RTDNGG F + +L +HGI E + P TPQ N VAER++ L E
Sbjct: 476 CEGCQYGKSHRLPFDNSTS-RCNAPLERIHSDLMGPTRTSSYSGFRYMLLFVDDYSRYTWVYFVKEKSEVFSKFQEFKVTVEGELGRKIKTLRTDNGGEFMSNEFLSFCRKHGIKREFSCPYTPQQNGVAERKIRHLSE 613
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Match: A0A6D2JZV9_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JZV9_9BRAS) HSP 1 Score: 94.4 bits (233), Expect = 1.060e-19 Identity = 55/139 (39.57%), Postives = 75/139 (53.96%), Query Frame = 1
Query: 1 CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIIVDDYSRFQAVKVIKKKSDSTPALQSYIAEYMTPKGLKIGAIRTDNGGGFDGDFYLD---EHGINHELTSPDTPQYNDVAERRLGLLWE 408
C+GC K+HR T R ER++ DL GP R +S G Y+++ VDDYSR+ V +K+KS+ Q + G KI +RTDNGG F + +L +HGI E + P TPQ N VAER++ L E
Sbjct: 162 CEGCQYGKSHRLPFDNSTS-RCNAPLERIHSDLMGPTRTSSYSGFRYMLLFVDDYSRYTWVYFVKEKSEVFSKFQEFKVTVEGELGRKIKTLRTDNGGEFMSNEFLSFCRKHGIKREFSCPYTPQQNGVAERKIRHLSE 299 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48819.12022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig48819.12022.1 >prot_H-paniculata_contig48819.12022.1 ID=prot_H-paniculata_contig48819.12022.1|Name=mRNA_H-paniculata_contig48819.12022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp CKGCSTAKAHRFAVRKKTDKRATWVAERLYVDLSGPMRVTSLGGSSYVMIback to top mRNA from alignment at H-paniculata_contig48819:694..1125+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig48819.12022.1 ID=mRNA_H-paniculata_contig48819.12022.1|Name=mRNA_H-paniculata_contig48819.12022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at H-paniculata_contig48819:694..1125+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig48819:694..1125+ >mRNA_H-paniculata_contig48819.12022.1 ID=mRNA_H-paniculata_contig48819.12022.1|Name=mRNA_H-paniculata_contig48819.12022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig48819:694..1125+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |