prot_H-paniculata_contig4859.11985.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4859.11985.1
Unique Nameprot_H-paniculata_contig4859.11985.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length249
Homology
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BLAST of mRNA_H-paniculata_contig4859.11985.1 vs. uniprot
Match: A0A6H5K7I7_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7I7_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.560e-25
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0 
Query:  190 MELILTSFLSPILWVIPQGTVHKICSNLHPTDISQVACVCHDWKQLAHDVPTLAPGLVD 248
            MELILTSFLSPILWVIP+G V  + +NLHPTD++QVACVC DW+QLA DVP LAPG+VD
Sbjct:    1 MELILTSFLSPILWVIPRGAVQNMMTNLHPTDLTQVACVCQDWRQLAQDVPALAPGVVD 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4859.11985.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7I7_9PHAE1.560e-2576.27F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.50coord: 201..243
e-value: 3.3E-5
score: 25.7
NoneNo IPR availableGENE3D1.20.1280.50coord: 151..200
e-value: 3.3E-5
score: 25.5
IPR001810F-box domainPFAMPF12937F-box-likecoord: 156..189
e-value: 1.4E-5
score: 24.9
coord: 206..242
e-value: 2.1E-5
score: 24.3
IPR001810F-box domainPROSITEPS50181FBOXcoord: 4..53
score: 8.623
IPR001810F-box domainPROSITEPS50181FBOXcoord: 152..201
score: 8.862
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 6..43
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 201..238
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 145..189

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4859contigH-paniculata_contig4859:7387..11991 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4859.11985.1mRNA_H-paniculata_contig4859.11985.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4859 5181..12063 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4859.11985.1 ID=prot_H-paniculata_contig4859.11985.1|Name=mRNA_H-paniculata_contig4859.11985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
MASPKQLSNLPKEVMWRVLGFVDETHRAHWRQVARRWSHLEKSRSNSCSF
GSTIGGGRRASTVRPMPNELLVGLVVQFLDEPDDGDRLRHIARVWAAYLA
QTRVRVAAAAAGAAAAASVSSSKGTGCGGTPGTGPFLPLGIAFGPETEPG
PLDTTGRLPNELLESMFDFLDEDQTMNCASVARRWRSSAMELILTSFLSP
ILWVIPQGTVHKICSNLHPTDISQVACVCHDWKQLAHDVPTLAPGLVD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf