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Homology
BLAST of mRNA_H-paniculata_contig4859.11985.1 vs. uniprot
Match: A0A6H5K7I7_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7I7_9PHAE) HSP 1 Score: 106 bits (265), Expect = 3.100e-24 Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 1
Query: 640 MELILTSFLSPILWVIPQGTVHKICSNLHPTDISQVACVCHDWKQLAHDVPTLAPGLVD 816
MELILTSFLSPILWVIP+G V + +NLHPTD++QVACVC DW+QLA DVP LAPG+VD
Sbjct: 1 MELILTSFLSPILWVIPRGAVQNMMTNLHPTDLTQVACVCQDWRQLAQDVPALAPGVVD 59
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-21_000830.1 |
| Exons | 4 |
| Model size | 3025 |
| Cds size | 747 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4859.11985.1 >prot_H-paniculata_contig4859.11985.1 ID=prot_H-paniculata_contig4859.11985.1|Name=mRNA_H-paniculata_contig4859.11985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
MASPKQLSNLPKEVMWRVLGFVDETHRAHWRQVARRWSHLEKSRSNSCSF GSTIGGGRRASTVRPMPNELLVGLVVQFLDEPDDGDRLRHIARVWAAYLA QTRVRVAAAAAGAAAAASVSSSKGTGCGGTPGTGPFLPLGIAFGPETEPG PLDTTGRLPNELLESMFDFLDEDQTMNCASVARRWRSSAMELILTSFLSP ILWVIPQGTVHKICSNLHPTDISQVACVCHDWKQLAHDVPTLAPGLVD* back to topmRNA from alignment at H-paniculata_contig4859:5181..12063- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4859.11985.1 ID=mRNA_H-paniculata_contig4859.11985.1|Name=mRNA_H-paniculata_contig4859.11985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6883bp|location=Sequence derived from alignment at H-paniculata_contig4859:5181..12063- (Halopteris paniculata Hal_grac_a_UBK monoicous) CAGGCATCAGCGTATCAGACAATATCAAACACCAAGCCCAGACGATCCGT
GAACGTGTGAATACTGAACAAAATGGCTAGCCCCAAACAGCTCAGTAATC
TTCCTAAGGAGGTTATGTGGCGCGTGCTCGGCTTCGTGGACGAGACGCAT
AGGGCTCACTGGAGACAGGTCGCCCGTAGATGGTCTCACCTGGAGAAAAG
TCGGTCTAACTCTTGTAGCTTCGGAAGCACCATTGGAGGAGGCCGCCGGG
CCAGTACCGTGAGACCCATGCCGAACGAACTTCTGGTGGGCCTTGTTGTG
CAATTTCTGGACGAGCCTGATGATGGGTGAGGTTTTTGTTGATCTTATGG
TTGTTTGAGGTGGTATGTGGCTTGAGAAATTATTGTCGTTATCATCAGCA
GGGTCAACAAGGAACACACCAGGAAGGGTAACGGTTTGTTTTATGTACAG
TAGTACTGTAAAGCACACCCCTCTTGGTACATCAGCTGTATGTACAAAGT
GTTTGTGGTGCACATTTCAAGGATCGGAGATGGCACCTAGGGGTTCATGA
ATGCTGAGCTGTGTTGATTGCGATATATCGCATTCGTGAATAAAAGCGTG
TGGACCAGTTCAGATATGCGAGTATAGAGGTTTGTTGTTGTAGTTGAGCG
ATTGAGCCGCCATACGCAGTTCGACCTGTAAGTGCTCTAGTCTAGCTTGA
CGCTACGAACAGCAGATTTAGGTTTACGAAGACAAACAATATATACAAGC
GGGCCGATTGTAGACATTTCCATTGAGCAGGGTGTCCATTTCTACGAGCG
AGATGTATGTGCACAAGTTATCTAAACTAGTCGGCATGTGCTAAGCCTCA
GTGCTCTCCCCTTTGTTGTACTAGAGAACTTGTGGAGTTCCAATGAACTG
TGTTTGCTGCCGTCCAACCTGCAACCAACGTTGCAGACGTTCAGCAACAA
CGGCTGGGCGGAGTCCGACCAAAGCCGTGAGTACTGCTGTGCGGAAACCG
TGCGCCAAAGACAGCGAGTGCCTTCAGTACTTGCCGTGGATTCTGATGAT
TGAAGTTGGATACAGGCTTTTTCTAAGCGGCTCATAATATTGATATTTTC
GTCCGCTCTACTTACTTTGTTGAACGCATTTGATGATGGTCTTTGATCCT
ATCTGCGGAGTATGAGCTGTCGGCGAGTATTGAAACCGATGACCAGGCTA
ACTGTGCACTGGCCAGTTCCCAACTGCGCATTTAAAAAAAACCCGACGAG
ATTTAATTGGATAACAAAGCAATAGTTGAGGTTTTTCCTTTGTCTCAGGG
ATAAAAACGATTCTCACAATTCAATTCTGATCGTGGCTTTTTGAGCAAGA
ATCGATTTTGTGACTCATCAAAATAACGGATTTGGGTTCCCGAGATGTCG
AGGGCCAGCAGGATCCAGCATTTTTCAGAAAAAAATCTCAAACCAACACG
CAAGTATCGTGCAGAGAAAAATAGAGTGCACGCTCACTAGCAGGGACAGT
AGCCCTTGCTCCACTCCAAGACCCAAGCTTGATTTGACCGGAATTCATCT
TGTGTAGGGGGAGCTACAGCAATCCATCAGGAAATTTCAGTTGTCAAGAA
GTGCTTCTTTTGCGTTGTGGTGCAGCATTTGACGGATAATTAGGTCTGAA
TCGGGGCCGATATGTTTGTATTATTTTCGTGTTTGGCCTCTCGCATGCCC
ATCATGATGAAGTCATTGATCTATGCAATACATGGACCCATGTTATTGCC
GTTATCCAATGGGAAAATTAGCGTGAAAAGGGCCGAACTCAAAATGAACG
TCTTCTCTTGCTCAGGTAGCGTCTCCGGCGATGCCCCCTCACCAGCGGAG
GATTGGGGCAGAGTTGGGCTAAAGCGCTCGTTTGGCACTCCGCGGTGCTG
GCTCGCTTTGCTCTCCCCGATACATTACCGATACATCAGCTTGCTACATC
GGTAATATATATATCGATACATTTTTAGGCTCGTTTTAAATTATCAATAC
ACAGCCCTCCCGGGTATGGACTAGTAGTCAAAATTATATTGAAGTATTAT
CTTTGTAATATATGAGTTCAACCCAAAAGGCTTTAAAAGCTTGAAATTAT
AGGCTTGTTCTTCACCTCTGAACCCTGTTTATTTTGGGTTACCTATTAGA
ATAAAAATTGTTCCAGTATTTAATTCACCATTAGGTACTAAAACACAAGA
AGATGAACGTAAAAAACGCGAAAATTGTTCTTCCATTTCTATTAGTAGTA
AAGTAGTAGTCCTTCATCCGTCTACCCACCCTCCCTCCCCCGTTCGCCCC
CTTTTTTTAATCACGTACGTCACGTATACAGAGACCGTTTGAGGCACATA
GCAAGAGTGTGGGCGGCGTATCTCGCCCAGACTAGAGTTCGCGTAGCGGC
CGCAGCGGCTGGCGCTGCTGCAGCGGCGTCGGTTTCATCTTCGAAAGGAA
CCGGTTGCGGCGGAACCCCGGGAACTGGTCCGTTCCTTCCCCTCGGCATC
GCCTTCGGTCCTGAGACGGAACCCGGTCCGCTGGACACGACCGGACGGCT
GCCTAACGAACTGCTTGAGTCGATGTTCGATTTTCTTGATGAAGACCAGA
CTATGAACTGTGCGTCTGTGGCTCGCAGGTGTGATGCTTGATGGAACTAT
GTAGGGTGGGTGGGATGAGGTTATTGCGAGAAATTTTGAATGTACGCATC
TTTAGGCCATGACGTACTCAGCTCAGTAGAACCCTATCGTGATCCGCGTG
GTTTGTGTAAAAGGGAGTGCTATTGTGGTGGTAGATTGGCAATTGCTAAG
AGGCATCTGGACGGTTACTGTGCGGTAGTGCAGTTTGTTTTTTTTCCTGT
ACTTGCGTGCCGAGTTTGCCACCGACGGCTTGATATGAAGTTTCACACGC
GTTCGGTATTTGGGTGAAACTTGATGGATGTCGTCGATCACTGAACACCT
TCGAATGTAATACTCGAGTCATATGCACACACGCACACACACACACTTGG
TTTCTCCGGTTATTCTTTTTTTTGTTAGCAATTCTGGAAACGACGAAACG
TCATCACCGCTAAGACGTGAGACTCCGTAGCACAGGTAAAGCCTAGCGGG
GACATGAGTAGTTCTAGAATTTATGTACTTTTGGTCCAGTTTTATGTGTC
GCACCGGACGGCAGCTATTTAGCTGGCACCGACATCGCTGTACCTGGCTG
TGACAGCTGGTATATTGCGCAGGTGTGCTGCAAAAGTAGTTTTGCGGGAA
ACGGTTCACGATAGTTTCTCATGTGCGATCGACGTATCTGACCGCTCCAT
GTCAAAACCCTGATGCGATAATTGGTTGAGAAGTGCACCGCATAATGTCA
TACCCCAGCCGATATGGGTGTAACTCCATAGCTATCCCCAAAAGAGATTT
GACAAGGTGAAACTTGACAAGGGTATTCCTGCAGTACTGGGTTCCCGACG
GTTAGGCCATACAGTACAGGTTTCAGAGGTGCTTCATGACAAGAAGTATC
TCAAAAGTGCCAAACCAGCGAAGTCAAGGGCAAGACCAATAATTTTTACA
AGCAGTCGCAAGTCCTTTCTGGTTTTCTACTCCTGAGCAAGTGTGTTTTG
ACGTCCCCGAAGTCACCACAACAAAAAAGCTCTTTATTTCTGGCTTTTTG
TTGTATTTTTGTAACCGTGCAGGTGGAGGTCTTCGGCGATGGAGCTAATC
CTGACTTCCTTCCTCAGTCCCATCTTGTGGGTCATTCCCCAGGGAACGGT
CCACAAGATCTGCTCGAACCTGCACCCAACCGACATATCGCAGGTATATC
CAGTATTCACTGATCGGCCCAGTATTACACTCGTGAGGATAACCTTCAGT
TAGGCACGTGGTCTGTTAGCTATTGTGCTGTCAATACTCAATACTCGTGT
TTGAATAGCTGGCGGTAGCTTGCACTGTAGCTGCATGTCAAAAATACAGA
GGATGGACATCGCAAACAATGGTGCACATAGCCGCTATGAATGACAAGCT
ATGTGTATTTCGAAAGGATCGTCCAAAAGGAAGAGTAAAGTCGCAACTAT
CACGGGTGCCGTCTCTGTCCGTCAAGATTTGTTTGTGGACATTTACTCGA
GTTGAATGTTGGAAAAATGGTTTCGGAATCACCTTCGTGTACCTCACCCA
CAGGCCAAACAGTTTTGAGATTTATGCTATGCCAAGTAGACGCAATTTTA
CGTCGAATTAGCTCAACATTGTCAGGATCGCTAGACGCTGGCATTGGCAA
TTTGTCGTTCTTAGGAGGCATGTTCCGATTCTCTTCTGTCGTCGAAAACG
TATCTGGAGAGAAAAATTGTGAAGTGGAGGGGGGAGGTAAACAGAAACTA
CACCATGACAGCGATAACAACATCGGGATATGATTTGACTCAGTTACACT
ACGAAAAAAAGACAGAAATAGGCCTGCAACAATCAGTCAAATCTGAAGAT
CCGCATAGGCAATTTATGTTATATATACAATTGTAGACTGATTTCACGAA
CGAATGTTTTTTTAGAAAAGGATATAAGCCATTTAAATAATGGGAGCATC
CCATACTCCGCGCTCCATCATTCCTCTGATACATTACTGAACTTGTGTTC
AGGTTGCCTGTGTCTGCCACGACTGGAAGCAACTGGCGCACGACGTCCCT
ACACTGGCCCCCGGGCTAGTCGACTGATGATGATAATGGTGGACAGGACC
GCTGATGGATGGGTTGGACCGAAGTGGAAGGATGGATGGATGGCTAATGT
GGAACCCGTGGTCGCATGTAGATATATTTTGGAGATCTTACAGGTGTACC
GTCCAATCGAAAACAATGTGAACGGAGGAGATACGACTGACTGATTGATT
GATTGATTGACTGACTGTGTGTCGTAGTTCTCGCTAGTATACCTGAATCA
AAGGATGCGACTGTTTTTTGTAGCATCAAAAGTGGTTGACTTGGAAGCAA
GACAGCAGAACCCTTGATTTGTTGGTTTTATTTGTTAATTGTGGTGGTGG
TGATGGTGGTCGTCGTCGTCGTGGTTGTTGTTGCTATTTGTTAGCCGTTT
CGTGCTGTTTCTCGTCAAGGAATATCTGGTTGCTTCTTTCTTTTTCTTTT
CTTTTTTTCGGACAAAGAAATTAAGCAACATGATCAGGGCACATACGCAA
TGCCCGCCCATCTGGCTGCATTGTGTGTGTAATTACAGTGACTTTTTTAC
CTGGGGCTTATCCTTTTTCTGTCGCTTTTCATGGAGTCAGCCGGAAGCCT
TATTGCTGTGTTGTACTAGTGAGGTATGACATTTTTTCGCGACGTTCACG
CTATTGATTGACTGCCAGCCAACAACAGAATTGCCGCTGTGCCAGCGGGA
ACCGTTTTTTCTGGTACGAATTTTGTTGGTGTTGAAAGCGCGTTGTGGGT
TTGTGTTTAGATTGTAGTTTTGTTTTGTTTTTCACCGGGGATGGTGTTTT
TGCGGTCCACCAAGCGTGTGCTCTTCTAAAGCGATTTGGCAACGGTGATC
GATGACAGAGAGAAACTGTTCCGGAGAATCAATGTCTATGATTGGTTGCA
CAGGTTTCTCGCAGGGATGGTTCTCGACTTCCCAGGTCTTTGGCGATGTG
ATCCATTTTAGAGTAAGCAGTAATGCACTCAAAGTCGTGCTTGTGTACCG
GTTCGTACATTTTTTATCCTCGAATCAACCACCTCTCGTTGTGTTGCAGC
CGATCGAGCGTTGCTTGTAGAATAGAACGTGTGTGTGTCCCTCGCCGTTT
GTACGGGCATTTTTACAACAGTTCGGATATTCGCGGACGAAAAAATGTCC
AATTTGCTACACGACAGCTCAAAACATTGTTGCAAATTTCGGCCTGAAAT
TGCAATTAGGAATTTCGGGGTTTTACAGCCAAGAAAGTTTGTTCCAATAC
TGTAGGTGATTGAGTGTGTTGTTCTAGGTCGGCAGGCGTGTGGTGTTGCA
GGAAGAAGCTGCTGCATACATGCGTAACGGTTTTTATGTCTTCGGGTTCA
TAAGTTAGCTTTTTTGGTCATGTTTTGGCACTTCAAATTCATGTCGCCTG
AAGTATGTATCAATACATGAGCTCTACTTGGTGATGGTTATTGTTGATTA
TTGTTGCTGCTCTCGACGAGTACTATTCGTGCACTTCTTCACGCTTCAGG
ACGCTCTCTGTAAACATGTATACATTTTTGTTTTTTTCGTGTCTCATTCG
GCTGGGGTGGGAATGGGTGGAGAGATCTTCGGAACTGATAACGAAATAAT
GGCGTTCATACACGACTCTAGCAATGTTGATGAATCATTCTTGACGTTAA
ATTTACCTCGTTTTAGGCTTTATACGACTGGCCGTGGCCATGGATGGGGA
GGAAGATCTATTTTTGTGTCACTCTCCGCTGAGAATAGTTGAGTTTTGCG
GAATGGTCGTGAGGCATTGTTGGCGGTTCATATTGGAAGCATACGACATG
GATGGGAATAATTGGAAGATGTTACAGTGTAAGCGCTACCGCAAGGTTAT
TTATGTACTAGAAGTGCATGTGTTATGTACCATGATAAATTGATACGTCT
TGTCTGCCCCTAGCATAGTCGGCCACGTTTGTGGGAAACATGGATAATGA
TCCTGTTTTTTGTTTGTTTGAACCCTGGATGTTTTTGGGGGTTAAACACC
AAATTTCGGTTCATTTAGTTTGCTGTCGTTACCAAGAGCACATCGTGAAG
GCAGGCGCGGGATGGTAAGGGCCATATTTCATGACTAGCCCTTGAAAACG
TTCTAGGATAGTCACATTGCCCGGGGTGTTTTTGTGCCATGGTGTTAGTG
TGAAAGATTCAGTTTTTTGTTCGGAACTGTGCCGTAAAATATAAAACATA
CTACGTTGGATACTTTGCTATTATAACATTCGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig4859:5181..12063- >mRNA_H-paniculata_contig4859.11985.1 ID=mRNA_H-paniculata_contig4859.11985.1|Name=mRNA_H-paniculata_contig4859.11985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig4859:5181..12063- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGCTAGCCCCAAACAGCTCAGTAATCTTCCTAAGGAGGTTATGTGGCG CGTGCTCGGCTTCGTGGACGAGACGCATAGGGCTCACTGGAGACAGGTCG CCCGTAGATGGTCTCACCTGGAGAAAAGTCGGTCTAACTCTTGTAGCTTC GGAAGCACCATTGGAGGAGGCCGCCGGGCCAGTACCGTGAGACCCATGCC GAACGAACTTCTGGTGGGCCTTGTTGTGCAATTTCTGGACGAGCCTGATG ATGGATGGCTAGCCCCAAACAGCTCAGTAATCTTCCTAAGGAGGTTATGT GGCGCGTGCTCGGCTTCGTGGACGAGACGCATAGGGCTCACTGGAGACAG GTCGCCCGTAGATGGTCTCACCTGGAGAAAAGTCGGTCTAACTCTTGTAG CTTCGGAAGCACCATTGGAGGAGGCCGCCGGGCCAGTACCGTGAGACCCA TGCCGAACGAACTTCTGGTGGGCCTTGTTGTGCAATTTCTGGACGAGCCT GATGATGGAGACCGTTTGAGGCACATAGCAAGAGTGTGGGCGGCGTATCT CGCCCAGACTAGAGTTCGCGTAGCGGCCGCAGCGGCTGGCGCTGCTGCAG CGGCGTCGGTTTCATCTTCGAAAGGAACCGGTTGCGGCGGAACCCCGGGA ACTGGTCCGTTCCTTCCCCTCGGCATCGCCTTCGGTCCTGAGACGGAACC CGGTCCGCTGGACACGACCGGACGGCTGCCTAACGAACTGCTTGAGTCGA TGTTCGATTTTCTTGATGAAGACCAGACTATGAACTGTGCGTCTGTGGCT CGCAGAGACCGTTTGAGGCACATAGCAAGAGTGTGGGCGGCGTATCTCGC CCAGACTAGAGTTCGCGTAGCGGCCGCAGCGGCTGGCGCTGCTGCAGCGG CGTCGGTTTCATCTTCGAAAGGAACCGGTTGCGGCGGAACCCCGGGAACT GGTCCGTTCCTTCCCCTCGGCATCGCCTTCGGTCCTGAGACGGAACCCGG TCCGCTGGACACGACCGGACGGCTGCCTAACGAACTGCTTGAGTCGATGT TCGATTTTCTTGATGAAGACCAGACTATGAACTGTGCGTCTGTGGCTCGC AGGTGGAGGTCTTCGGCGATGGAGCTAATCCTGACTTCCTTCCTCAGTCC CATCTTGTGGGTCATTCCCCAGGGAACGGTCCACAAGATCTGCTCGAACC TGCACCCAACCGACATATCGCAGGTGGAGGTCTTCGGCGATGGAGCTAAT CCTGACTTCCTTCCTCAGTCCCATCTTGTGGGTCATTCCCCAGGGAACGG TCCACAAGATCTGCTCGAACCTGCACCCAACCGACATATCGCAGGTTGCC TGTGTCTGCCACGACTGGAAGCAACTGGCGCACGACGTCCCTACACTGGC CCCCGGGCTAGTCGACTGAGTTGCCTGTGTCTGCCACGACTGGAAGCAAC TGGCGCACGACGTCCCTACACTGGCCCCCGGGCTAGTCGACTGA back to top
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