mRNA_H-paniculata_contig4847.11966.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4847.11966.1
Unique NamemRNA_H-paniculata_contig4847.11966.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3)

HSP 1 Score: 190 bits (483), Expect = 5.560e-50
Identity = 113/294 (38.44%), Postives = 165/294 (56.12%), Query Frame = 1
Query:    4 LPAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLVIAGHR-EEVDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAPQSADKPSKPNGNPTE-----YRGMVGSLMHASTGTRLDAAYAVHK 867
            LP   KAI  +W+F R+  EN  + RYKARLVAQGFS + G  F  T APV R  +LR + ++A    ++++ LDV   Y N  + EE+F++ P     F   T  V RL+K+LYGLK +G  W+  L   L  +   +S  D C+Y  R E G +  +  V+VDDL+I   + +E++E K  + + F +  LG    ++G EV+RDR   TI++ Q S++  +LK+Y    CR V TP++  V ++     D   +P  +  E     Y   VGSLM+A+ GTR D AYAV K
Sbjct:  765 LPPERKAIGCRWVFLRKYNENGEIIRYKARLVAQGFSQIPGMDFDGTFAPVMRHDSLRALLAIAAIKNLEIQQLDVKGAYLNGDLREEIFMRQP---DGFHDGTSKVCRLKKTLYGLKQSGREWNRKLDKVLTELRFSKSNVDHCVYI-RTENGHTSYIT-VWVDDLMIFTDKSDEMNEIKAYLKKEFEISDLGEPKLIIGLEVKRDRKKHTISLGQTSYVDRILKKYGMENCRPVSTPMDPNVVLTRVNENDVKDEPREDRDERLGGRYAAAVGSLMYAAIGTRPDIAYAVQK 1053          
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A0A1WXQ3_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WXQ3_ZEUCU)

HSP 1 Score: 183 bits (465), Expect = 1.370e-47
Identity = 109/304 (35.86%), Postives = 176/304 (57.89%), Query Frame = 1
Query:    1 RLPAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDD-LVIAGHREEVDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKIS---APQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAVHKAAHRMEDHVGK 900
            +LP G +AIN+KW+FK +     +  RYKARLV +G S  +G  + ET +PV R  +LR +F++A +H + +  LD    + N  ++EE+F+K P     +  ++  V RL KSLYGLK     W++ L++ L+ +GL+RS  D C+Y+   +   S + V +YVDD LV +  +E     K+ +S +F+MK +GS+S VLG  V+RD     I + Q  +I  VLKR+  ++C  V TP++   K++    PQ+ +  +K       Y   +GSL++A+  TR D ++AV+  + R   + GK
Sbjct:  807 KLPKGKRAINSKWVFKTKRNAEGAFVRYKARLVVKGCSQKQGIDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLNGELQEEVFMKQP---EGYDDNSGRVCRLLKSLYGLKQASKVWNDKLNEALISLGLNRSEVDQCIYYCVSK--HSMVYVAIYVDDVLVFSNDKEATQRIKNVLSSKFKMKDMGSVSSVLGMRVQRDEVKKLIKLDQSEYISSVLKRFGMNDCNAVATPLDLSQKLTLEICPQTEE--AKKEMEKIPYMEAIGSLLYAAQNTRPDISFAVNLLS-RFSQNPGK 1102          
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A182H8F8_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H8F8_AEDAL)

HSP 1 Score: 181 bits (459), Expect = 2.630e-47
Identity = 106/287 (36.93%), Postives = 167/287 (58.19%), Query Frame = 1
Query:    4 LPAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLVIAGHR-EEVDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAPQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAV 861
            LPAG +AI++KW+FK +   + +V RYKARLVA+G S   G  + ET APV R+  +RT+ ++A +  + +  +DV   + N  + E ++++LP   + F R T  V +L KSLYGLK    +W+   H F+V +G +RS  DSCLY  +  G  S L++  YVDD+++A    +E+   K +++Q F M  +  L+  LG +V R+   GT+TI+Q  ++R +LKR+    C+ V TP+E  +K+   +SA     P      YR +VG L +    +R D + AV
Sbjct:  290 LPAGKRAISSKWVFKIKYAADGNVDRYKARLVAKGCSQRHGFDYQETYAPVVRISTVRTLLAVAVQKNLHVHQMDVRTAFLNGNLSETVYMRLP---TGFERGTK-VCKLNKSLYGLKQAPRSWNERFHKFMVHLGFERSQHDSCLYVRQKNGVVSYLIL--YVDDIILASSSLDELVRIKRSLTQEFEMDDMKELNHFLGLKVERNMKEGTLTINQSQYVRALLKRFDMQNCKPVSTPLEVNLKLEKNESAPVTQHP------YRELVGCLTYLMLSSRPDISSAV 564          
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU)

HSP 1 Score: 182 bits (461), Expect = 2.920e-47
Identity = 107/289 (37.02%), Postives = 173/289 (59.86%), Query Frame = 1
Query:    4 LPAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVG-IGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLV-IAGHREEVDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKI-SAPQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAV 861
            LPAG K I  +W+++ +   +  + RYKARLVAQGFS   G  +FET APV R  +LR + ++A E  ++L   DV   Y N  ++EE++++ PP     S  +P VR LRK+LYGLK  G  W++ ++  L   +G  R  +D C+Y  +   G +  +V ++VDD+  +A   + +D  +  +++ +++  LG+   +LG E+ RDR   T++I Q  +I+ VL R+  ++C  V TP++  VK+   P+ AD  S+  G P  Y+ ++GSLM+A+ GTR D +YAV
Sbjct:   52 LPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGS--SPIVR-LRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPKGLT--IVGMHVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKMADCNPVTTPLDPNVKLCKEPEDADL-SEMKGVP--YQALIGSLMYAALGTRPDISYAV 332          
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A8H6Z6T5_9AGAR (Polyprotein n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6Z6T5_9AGAR)

HSP 1 Score: 182 bits (461), Expect = 4.550e-47
Identity = 100/287 (34.84%), Postives = 160/287 (55.75%), Query Frame = 1
Query:    4 LPAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLVIAGHRE-EVDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAPQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAV 861
            LPAG KAI +KW+++R+      VA++KARLVA G   + G  F ET +P  R+   R + +LA  + +K+ G+DV A Y N  +EE +++K PP+   F   T  V +L+ S+YGL+ +G NW+  L      +G  R   D C+Y  R+    S  +V V+VDD+ +  H   E+ + K  ++ +F +  LG L+++LG E+ R+  +G+I ++Q ++   VL+      C+ V TP++  VK++A    D           Y   +G LM+ + GTR D AYAV
Sbjct:  731 LPAGRKAIASKWVWRRKRDATGKVAKHKARLVADGSRQIPGIDFHETYSPTIRLETFRFLLALAARYQLKVHGIDVVAAYLNGKLEETVYMKQPPD---FDDGTGCVCKLKLSIYGLRQSGRNWNQKLDTAFKSLGFTRLIADQCVYIRREPATSSPTIVAVHVDDMTLFAHTNGELTQLKGELASQFNVTDLGPLTQILGMEITRNDSDGSIQLTQANYALRVLESVGMHNCKPVSTPLDHNVKLTALPDGDPRIGDTAFRHTYLSSLGKLMYLAVGTRPDLAYAV 1014          
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A2S2NPY8_SCHGA (Copia protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NPY8_SCHGA)

HSP 1 Score: 177 bits (449), Expect = 7.150e-47
Identity = 101/291 (34.71%), Postives = 159/291 (54.64%), Query Frame = 1
Query:    7 PAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLVIA-GHREEVDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAPQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAVHKAAH 876
            P     I+TKWIFK +      + +YKARLVA+GFS  EG  + ET +PVA++   R++   A +    L  LDV   + +  + EE++++ P     FS +   V RL K+LYGLK     W+N  H FL  IG  RS TD CLY     G E  + + +YVDD+++A G    ++E K+ + + F ++  G LS  LG ++  +     + ISQG +++ VL+R++  +C+    P+E KV +S    +   S+P      YR ++G LM+A   TR D +Y ++  +H
Sbjct:  101 PQNRNIISTKWIFKIKKDGEGQITKYKARLVARGFSQQEGMDYTETYSPVAKLTTFRSLLVFAVQKNWYLYQLDVKTAFLHGVVNEEIYIEQP---CGFSENNNLVCRLHKALYGLKQASKCWNNRFHQFLTKIGFTRSNTDHCLYTLDFSGSEDLIHLLLYVDDIILASGSINRINELKYQLKEEFEIEDCGILSYYLGIKIEHNIDKAELKISQGQYLKNVLRRFNMLDCKPRSIPIETKVDLSINTLSTTCSQP------YRQLIGCLMYAMLATRPDLSYCLNYFSH 382          
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 180 bits (457), Expect = 1.620e-46
Identity = 103/288 (35.76%), Postives = 162/288 (56.25%), Query Frame = 1
Query:    4 LPAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLVIAGHREEV-DEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAP-QSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAV 861
            LP    A+  KW+F+R+  +   V +YKARLVAQG+S + G  F ET APV R+ ++R + +LA  +  ++  +DV   Y N  ++EE++++ P     F   +  + RLRK+LYGLK +G  W+  LH  L  +G  R   D C+Y    + GE  ++  V+VDDL++  +  ++ +E K ++   F +  LG   +++G E+ RDR  G I ISQ  +I  +LKRY       V  P++  V  +A  ++ +   +  G    Y  MVGSLM+A+ GTR D +YAV
Sbjct:  944 LPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQP---EGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIIT-VWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAVGMPLDPNVAFTAEDENEEADDRLAGG---YASMVGSLMYAAVGTRPDISYAV 1224          
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A182GR37_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GR37_AEDAL)

HSP 1 Score: 171 bits (434), Expect = 2.880e-46
Identity = 96/259 (37.07%), Postives = 152/259 (58.69%), Query Frame = 1
Query:    1 RLPAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLVIAGHREE-VDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAPQSADKPSKP 774
            +LP G  A+  KWIFK +  E++   RYKARLVA+GF+  +G  + +T +P+ARM  LRTV +LA + G  +  +DV   + N  + EE+++ L PE   F +    V RL++SLYGLK    +W+   H+F+V +G  RS  D CLY  R   G++ +++ +YVDD++IA   E+ V   K  +S  F M  +G +   LG  + RD    T+ ISQ  ++  +L R+   +CR + TP+E ++K+   + + + SKP
Sbjct:  131 KLPEGRNAVTCKWIFKLKHSEDNEAPRYKARLVARGFTQKQGFDYSDTYSPLARMDTLRTVLALANQRGWSVHQMDVKCAFLNGELTEEIYM-LQPEG--FEQRDGLVCRLKRSLYGLKQAARSWNERFHNFVVRLGFVRSRNDLCLY--RRGSGDTQVILVIYVDDVLIASGSEKLVGTIKKCLSTEFEMTDVGEVRNFLGMRIDRDAEKKTLRISQRRYLENLLDRFQMRDCRPIATPMENRLKLPKGEESKRMSKP 384          
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: Q18L98_CITSI (Putative gag-pol polyprotein n=2 Tax=Citrus sinensis TaxID=2711 RepID=Q18L98_CITSI)

HSP 1 Score: 179 bits (455), Expect = 2.940e-46
Identity = 111/292 (38.01%), Postives = 169/292 (57.88%), Query Frame = 1
Query:    7 PAGWKAINTKWIFKRRLKENSSVA-----RYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFS-RDEGGESGLLVDVYVDDLVIAG-HREEVDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAPQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAV 861
            P   + IN KWIFKR    N  +      +YKARLVA+GF+  EG  F E  +PV +  ++R + ++     ++L+ +DV   + +  +EE++ +  P E         +V  L KSLYGLK +   W     DF+V  G  RS  DSC+YF   D+GG + LL+  YVDD++IA  ++ E++  K+ +   F MK LG+  R+LG ++ RDR  GT+ +SQG +I++VL+R+   +C+ V TP+  + K+SA  +++  S+ N  P  Y   VGSLM+A   TR D AYAV
Sbjct:  852 PGNKRLINCKWIFKR----NEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQP-EGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLL--YVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQTPLGPQFKLSAATTSEDESQMNEFP--YAQAVGSLMYAMVCTRSDIAYAV 1134          
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: C6JRI2_SORBI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C6JRI2_SORBI)

HSP 1 Score: 176 bits (447), Expect = 6.680e-46
Identity = 101/304 (33.22%), Postives = 167/304 (54.93%), Query Frame = 1
Query:    7 PAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLVIAGHREEV-DEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAPQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAVHKAAHRMEDHVGKTSVHA 915
            P G K +  KW+FK++L+ + ++ +YKARLVA+G++  EGE +F+T +PVAR+  +R + SLA  HG  +  +DV   + N  +EEE+++  P       ++   V +L KSLYGLK     W       L   G   +  D C+Y+    GG  G+++ +YVDD++I G+  +V  E K  +S  F MK LG    ++  ++ R+  NG +T+ Q  ++ +VL R+  SEC   PTP +  V++       +      +   Y  ++GSLM+ ++ TR D ++AV K + R   + G T  +A
Sbjct:  224 PFGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDYFDTYSPVARLTTIRVLLSLAASHGFLIHQMDVKTAFLNGELEEEIYMDQPDGFIANGQEGK-VCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRF--GGGDGVILCLYVDDILIFGNNLKVIKEVKEFLSNNFEMKDLGEADVIVNIKLSREEGNGWVTLMQSHYVEKVLNRFGYSECTPAPTPYDPSVRLRKNHRIAR------DQLRYSQIIGSLMYLASATRPDISFAVSKLS-RFVSNPGDTHWNA 517          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067T5Q4_GALM35.560e-5038.44Integrase catalytic domain-containing protein (Fra... [more]
A0A0A1WXQ3_ZEUCU1.370e-4735.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A182H8F8_AEDAL2.630e-4736.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A1M2V3W8_TRAPU2.920e-4737.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H6Z6T5_9AGAR4.550e-4734.84Polyprotein n=1 Tax=Mycena venus TaxID=2733690 Rep... [more]
A0A2S2NPY8_SCHGA7.150e-4734.71Copia protein (Fragment) n=1 Tax=Schizaphis gramin... [more]
A0A401GYH9_9APHY1.620e-4635.76Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A182GR37_AEDAL2.880e-4637.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q18L98_CITSI2.940e-4638.01Putative gag-pol polyprotein n=2 Tax=Citrus sinens... [more]
C6JRI2_SORBI6.680e-4633.22Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4847contigH-paniculata_contig4847:2137..3314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog67593.Physo108689
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QIRP@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1115
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4847.11966.1prot_H-paniculata_contig4847.11966.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4847 2184..2747 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.9795978-UTR-H-paniculata_contig4847:2136..21831622930434.9795978-UTR-H-paniculata_contig4847:2136..2183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4847 2137..2183 -
1691481290.910177-UTR-H-paniculata_contig4847:2136..21831691481290.910177-UTR-H-paniculata_contig4847:2136..2183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4847 2137..2183 -
1622930435.0384185-UTR-H-paniculata_contig4847:2747..33141622930435.0384185-UTR-H-paniculata_contig4847:2747..3314Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4847 2748..3314 -
1691481290.9614806-UTR-H-paniculata_contig4847:2747..33141691481290.9614806-UTR-H-paniculata_contig4847:2747..3314Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4847 2748..3314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.996022-CDS-H-paniculata_contig4847:2183..24751622930434.996022-CDS-H-paniculata_contig4847:2183..2475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4847 2184..2475 -
1691481290.9277596-CDS-H-paniculata_contig4847:2183..24751691481290.9277596-CDS-H-paniculata_contig4847:2183..2475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4847 2184..2475 -
1622930435.012885-CDS-H-paniculata_contig4847:2538..27471622930435.012885-CDS-H-paniculata_contig4847:2538..2747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4847 2539..2747 -
1691481290.9454348-CDS-H-paniculata_contig4847:2538..27471691481290.9454348-CDS-H-paniculata_contig4847:2538..2747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4847 2539..2747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4847.11966.1

>prot_H-paniculata_contig4847.11966.1 ID=prot_H-paniculata_contig4847.11966.1|Name=mRNA_H-paniculata_contig4847.11966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTP
VEGKVKISAPQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAVHK
AAHRMEDHVGKTSVHAKVFFVVSVLCLTFPLRSAVRVMVTVWKDSLVPIG
RKMSRTESSPKDTYSN*
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mRNA from alignment at H-paniculata_contig4847:2137..3314-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4847.11966.1 ID=mRNA_H-paniculata_contig4847.11966.1|Name=mRNA_H-paniculata_contig4847.11966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1178bp|location=Sequence derived from alignment at H-paniculata_contig4847:2137..3314- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTACCGGCAGGGTGGAAGGCAATTAATACAAAATGGATTTTCAAGCG GAGACTGAAGGAGAACAGCAGCGTGGCACGCTACAAAGCGCGACTGGTGG CTCAAGGCTTTTCACATGTGGAGGGTGAAGGTTTCTTTGAAACCAATGCC CCCGTAGCTCGTATGGTGGCGTTACGTACTGTTTTTAGCCTGGCCACCGA ACATGGTATCAAATTAAAAGGCTTGGACGTAGATGCGGACTATTCGAACA CTCCGATAGAAGAAGAGCTATTCGTTAAGCTACCCCCCGAGTCTTCCCCT TTCTCCCGAGACACTCCGTTTGTGCGCCGCCTGCGTAAAAGCCTGTACGG CCTCAAGTAGAACGGCCTTAACTGGAGTAACAGTCTTCACGATTTTCTTG TTGGAATAGGACTCGACCGGTCCACTACCGACTCATGCTTGTACTTTTCT CGCGACGAAGGGGGAGAGTCAGGCCTTCTGGTGGACGTCTATGTTGATGA CCTGGTCATTGCTGGCCACCGTGAGGAAGTAGACGAGTTCAAGCATAACA TAAGTCAGCGTTTTAGGATGAAACAATTGGGCTCTCTCTCGCGCGTGTTG GGAACAGAAGTACGGCGTGACCGCCCTAATGGTACCATAACCATCTCGCA GGGTAGCCACATCCGCGAGGTACTAAAACGATACCATTGTAGCGAGTGTC GAGGGGTACCCACACCTGTAGAGGGAAAAGTGAAGATTTCGGCACCCCAG TCGGCCGACAAGCCCTCCAAACCGAAGTCAATTGGGCCTGTACTATTGGA CATAGGCGCAGGAGTACAATAAAGCAGTAGAGGGAAAAGTGGCAATCCAA CTGAATACAGAGGCATGGTAGGATCACTCATGCACGCCTCGACAGGAACT AGACTTGATGCAGCATACGCGGTACACAAAGCAGCACATCGTATGGAGGA CCATGTCGGGAAGACTTCAGTACATGCAAAGGTATTCTTCGTTGTCTCAG TACTGTGCCTAACCTTTCCGTTACGTTCGGCGGTAAGAGTAATGGTCACG GTCTGGAAGGATTCGTTGGTGCCGATTGGGCGGAAGATGTCGAGGACCGA AAGTTCACCAAAGGATACGTATTCAAACTAAACGGTGGTGCAATAAGTTG GTGCTCTAGGAAGCAGCAGTTAGTCACG
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Coding sequence (CDS) from alignment at H-paniculata_contig4847:2137..3314-

>mRNA_H-paniculata_contig4847.11966.1 ID=mRNA_H-paniculata_contig4847.11966.1|Name=mRNA_H-paniculata_contig4847.11966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig4847:2137..3314- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACAATTGGGCTCTCTCTCGCGCGTGTTGGGAACAGAAGTACGGCG
TGACCGCCCTAATGGTACCATAACCATCTCGCAGGGTAGCCACATCCGCG
AGGTACTAAAACGATACCATTGTAGCGAGTGTCGAGGGGTACCCACACCT
GTAGAGGGAAAAGTGAAGATTTCGGCACCCCAGTCGGCCGACAAGCCCTC
CAAACCGAAATGAAACAATTGGGCTCTCTCTCGCGCGTGTTGGGAACAGA
AGTACGGCGTGACCGCCCTAATGGTACCATAACCATCTCGCAGGGTAGCC
ACATCCGCGAGGTACTAAAACGATACCATTGTAGCGAGTGTCGAGGGGTA
CCCACACCTGTAGAGGGAAAAGTGAAGATTTCGGCACCCCAGTCGGCCGA
CAAGCCCTCCAAACCGAATGGCAATCCAACTGAATACAGAGGCATGGTAG
GATCACTCATGCACGCCTCGACAGGAACTAGACTTGATGCAGCATACGCG
GTACACAAAGCAGCACATCGTATGGAGGACCATGTCGGGAAGACTTCAGT
ACATGCAAAGGTATTCTTCGTTGTCTCAGTACTGTGCCTAACCTTTCCGT
TACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGGTG
CCGATTGGGCGGAAGATGTCGAGGACCGAAAGTTCACCAAAGGATACGTA
TTCAAACTAATGGCAATCCAACTGAATACAGAGGCATGGTAGGATCACTC
ATGCACGCCTCGACAGGAACTAGACTTGATGCAGCATACGCGGTACACAA
AGCAGCACATCGTATGGAGGACCATGTCGGGAAGACTTCAGTACATGCAA
AGGTATTCTTCGTTGTCTCAGTACTGTGCCTAACCTTTCCGTTACGTTCG
GCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGGTGCCGATTGG
GCGGAAGATGTCGAGGACCGAAAGTTCACCAAAGGATACGTATTCAAACT
AA
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