mRNA_H-paniculata_contig4847.11966.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3) HSP 1 Score: 190 bits (483), Expect = 5.560e-50 Identity = 113/294 (38.44%), Postives = 165/294 (56.12%), Query Frame = 1
Query: 4 LPAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLVIAGHR-EEVDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAPQSADKPSKPNGNPTE-----YRGMVGSLMHASTGTRLDAAYAVHK 867
LP KAI +W+F R+ EN + RYKARLVAQGFS + G F T APV R +LR + ++A ++++ LDV Y N + EE+F++ P F T V RL+K+LYGLK +G W+ L L + +S D C+Y R E G + + V+VDDL+I + +E++E K + + F + LG ++G EV+RDR TI++ Q S++ +LK+Y CR V TP++ V ++ D +P + E Y VGSLM+A+ GTR D AYAV K
Sbjct: 765 LPPERKAIGCRWVFLRKYNENGEIIRYKARLVAQGFSQIPGMDFDGTFAPVMRHDSLRALLAIAAIKNLEIQQLDVKGAYLNGDLREEIFMRQP---DGFHDGTSKVCRLKKTLYGLKQSGREWNRKLDKVLTELRFSKSNVDHCVYI-RTENGHTSYIT-VWVDDLMIFTDKSDEMNEIKAYLKKEFEISDLGEPKLIIGLEVKRDRKKHTISLGQTSYVDRILKKYGMENCRPVSTPMDPNVVLTRVNENDVKDEPREDRDERLGGRYAAAVGSLMYAAIGTRPDIAYAVQK 1053
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A0A1WXQ3_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WXQ3_ZEUCU) HSP 1 Score: 183 bits (465), Expect = 1.370e-47 Identity = 109/304 (35.86%), Postives = 176/304 (57.89%), Query Frame = 1
Query: 1 RLPAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDD-LVIAGHREEVDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKIS---APQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAVHKAAHRMEDHVGK 900
+LP G +AIN+KW+FK + + RYKARLV +G S +G + ET +PV R +LR +F++A +H + + LD + N ++EE+F+K P + ++ V RL KSLYGLK W++ L++ L+ +GL+RS D C+Y+ + S + V +YVDD LV + +E K+ +S +F+MK +GS+S VLG V+RD I + Q +I VLKR+ ++C V TP++ K++ PQ+ + +K Y +GSL++A+ TR D ++AV+ + R + GK
Sbjct: 807 KLPKGKRAINSKWVFKTKRNAEGAFVRYKARLVVKGCSQKQGIDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLNGELQEEVFMKQP---EGYDDNSGRVCRLLKSLYGLKQASKVWNDKLNEALISLGLNRSEVDQCIYYCVSK--HSMVYVAIYVDDVLVFSNDKEATQRIKNVLSSKFKMKDMGSVSSVLGMRVQRDEVKKLIKLDQSEYISSVLKRFGMNDCNAVATPLDLSQKLTLEICPQTEE--AKKEMEKIPYMEAIGSLLYAAQNTRPDISFAVNLLS-RFSQNPGK 1102
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A182H8F8_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H8F8_AEDAL) HSP 1 Score: 181 bits (459), Expect = 2.630e-47 Identity = 106/287 (36.93%), Postives = 167/287 (58.19%), Query Frame = 1
Query: 4 LPAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLVIAGHR-EEVDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAPQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAV 861
LPAG +AI++KW+FK + + +V RYKARLVA+G S G + ET APV R+ +RT+ ++A + + + +DV + N + E ++++LP + F R T V +L KSLYGLK +W+ H F+V +G +RS DSCLY + G S L++ YVDD+++A +E+ K +++Q F M + L+ LG +V R+ GT+TI+Q ++R +LKR+ C+ V TP+E +K+ +SA P YR +VG L + +R D + AV
Sbjct: 290 LPAGKRAISSKWVFKIKYAADGNVDRYKARLVAKGCSQRHGFDYQETYAPVVRISTVRTLLAVAVQKNLHVHQMDVRTAFLNGNLSETVYMRLP---TGFERGTK-VCKLNKSLYGLKQAPRSWNERFHKFMVHLGFERSQHDSCLYVRQKNGVVSYLIL--YVDDIILASSSLDELVRIKRSLTQEFEMDDMKELNHFLGLKVERNMKEGTLTINQSQYVRALLKRFDMQNCKPVSTPLEVNLKLEKNESAPVTQHP------YRELVGCLTYLMLSSRPDISSAV 564
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A1M2V3W8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V3W8_TRAPU) HSP 1 Score: 182 bits (461), Expect = 2.920e-47 Identity = 107/289 (37.02%), Postives = 173/289 (59.86%), Query Frame = 1
Query: 4 LPAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVG-IGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLV-IAGHREEVDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKI-SAPQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAV 861
LPAG K I +W+++ + + + RYKARLVAQGFS G +FET APV R +LR + ++A E ++L DV Y N ++EE++++ PP S +P VR LRK+LYGLK G W++ ++ L +G R +D C+Y + G + +V ++VDD+ +A + +D + +++ +++ LG+ +LG E+ RDR T++I Q +I+ VL R+ ++C V TP++ VK+ P+ AD S+ G P Y+ ++GSLM+A+ GTR D +YAV
Sbjct: 52 LPAGRKPIGCRWVYRLKRDSDGRIVRYKARLVAQGFSQAPGLDYFETFAPVIRTDSLRLLLAIAAERNMELAQFDVVGAYLNADLDEEIYMRQPPGYEEGS--SPIVR-LRKALYGLKQAGXQWNHHINKVLTADLGFQRLNSDPCVYLKKSPKGLT--IVGMHVDDMAALADTPDLMDTLRSGLARHYKITDLGTPRLLLGFEISRDRKKRTLSIKQSQYIQTVLDRFKMADCNPVTTPLDPNVKLCKEPEDADL-SEMKGVP--YQALIGSLMYAALGTRPDISYAV 332
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A8H6Z6T5_9AGAR (Polyprotein n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6Z6T5_9AGAR) HSP 1 Score: 182 bits (461), Expect = 4.550e-47 Identity = 100/287 (34.84%), Postives = 160/287 (55.75%), Query Frame = 1
Query: 4 LPAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLVIAGHRE-EVDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAPQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAV 861
LPAG KAI +KW+++R+ VA++KARLVA G + G F ET +P R+ R + +LA + +K+ G+DV A Y N +EE +++K PP+ F T V +L+ S+YGL+ +G NW+ L +G R D C+Y R+ S +V V+VDD+ + H E+ + K ++ +F + LG L+++LG E+ R+ +G+I ++Q ++ VL+ C+ V TP++ VK++A D Y +G LM+ + GTR D AYAV
Sbjct: 731 LPAGRKAIASKWVWRRKRDATGKVAKHKARLVADGSRQIPGIDFHETYSPTIRLETFRFLLALAARYQLKVHGIDVVAAYLNGKLEETVYMKQPPD---FDDGTGCVCKLKLSIYGLRQSGRNWNQKLDTAFKSLGFTRLIADQCVYIRREPATSSPTIVAVHVDDMTLFAHTNGELTQLKGELASQFNVTDLGPLTQILGMEITRNDSDGSIQLTQANYALRVLESVGMHNCKPVSTPLDHNVKLTALPDGDPRIGDTAFRHTYLSSLGKLMYLAVGTRPDLAYAV 1014
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A2S2NPY8_SCHGA (Copia protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NPY8_SCHGA) HSP 1 Score: 177 bits (449), Expect = 7.150e-47 Identity = 101/291 (34.71%), Postives = 159/291 (54.64%), Query Frame = 1
Query: 7 PAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLVIA-GHREEVDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAPQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAVHKAAH 876
P I+TKWIFK + + +YKARLVA+GFS EG + ET +PVA++ R++ A + L LDV + + + EE++++ P FS + V RL K+LYGLK W+N H FL IG RS TD CLY G E + + +YVDD+++A G ++E K+ + + F ++ G LS LG ++ + + ISQG +++ VL+R++ +C+ P+E KV +S + S+P YR ++G LM+A TR D +Y ++ +H
Sbjct: 101 PQNRNIISTKWIFKIKKDGEGQITKYKARLVARGFSQQEGMDYTETYSPVAKLTTFRSLLVFAVQKNWYLYQLDVKTAFLHGVVNEEIYIEQP---CGFSENNNLVCRLHKALYGLKQASKCWNNRFHQFLTKIGFTRSNTDHCLYTLDFSGSEDLIHLLLYVDDIILASGSINRINELKYQLKEEFEIEDCGILSYYLGIKIEHNIDKAELKISQGQYLKNVLRRFNMLDCKPRSIPIETKVDLSINTLSTTCSQP------YRQLIGCLMYAMLATRPDLSYCLNYFSH 382
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY) HSP 1 Score: 180 bits (457), Expect = 1.620e-46 Identity = 103/288 (35.76%), Postives = 162/288 (56.25%), Query Frame = 1
Query: 4 LPAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLVIAGHREEV-DEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAP-QSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAV 861
LP A+ KW+F+R+ + V +YKARLVAQG+S + G F ET APV R+ ++R + +LA + ++ +DV Y N ++EE++++ P F + + RLRK+LYGLK +G W+ LH L +G R D C+Y + GE ++ V+VDDL++ + ++ +E K ++ F + LG +++G E+ RDR G I ISQ +I +LKRY V P++ V +A ++ + + G Y MVGSLM+A+ GTR D +YAV
Sbjct: 944 LPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQP---EGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIIT-VWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAVGMPLDPNVAFTAEDENEEADDRLAGG---YASMVGSLMYAAVGTRPDISYAV 1224
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: A0A182GR37_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GR37_AEDAL) HSP 1 Score: 171 bits (434), Expect = 2.880e-46 Identity = 96/259 (37.07%), Postives = 152/259 (58.69%), Query Frame = 1
Query: 1 RLPAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLVIAGHREE-VDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAPQSADKPSKP 774
+LP G A+ KWIFK + E++ RYKARLVA+GF+ +G + +T +P+ARM LRTV +LA + G + +DV + N + EE+++ L PE F + V RL++SLYGLK +W+ H+F+V +G RS D CLY R G++ +++ +YVDD++IA E+ V K +S F M +G + LG + RD T+ ISQ ++ +L R+ +CR + TP+E ++K+ + + + SKP
Sbjct: 131 KLPEGRNAVTCKWIFKLKHSEDNEAPRYKARLVARGFTQKQGFDYSDTYSPLARMDTLRTVLALANQRGWSVHQMDVKCAFLNGELTEEIYM-LQPEG--FEQRDGLVCRLKRSLYGLKQAARSWNERFHNFVVRLGFVRSRNDLCLY--RRGSGDTQVILVIYVDDVLIASGSEKLVGTIKKCLSTEFEMTDVGEVRNFLGMRIDRDAEKKTLRISQRRYLENLLDRFQMRDCRPIATPMENRLKLPKGEESKRMSKP 384
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: Q18L98_CITSI (Putative gag-pol polyprotein n=2 Tax=Citrus sinensis TaxID=2711 RepID=Q18L98_CITSI) HSP 1 Score: 179 bits (455), Expect = 2.940e-46 Identity = 111/292 (38.01%), Postives = 169/292 (57.88%), Query Frame = 1
Query: 7 PAGWKAINTKWIFKRRLKENSSVA-----RYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFS-RDEGGESGLLVDVYVDDLVIAG-HREEVDEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAPQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAV 861
P + IN KWIFKR N + +YKARLVA+GF+ EG F E +PV + ++R + ++ ++L+ +DV + + +EE++ + P E +V L KSLYGLK + W DF+V G RS DSC+YF D+GG + LL+ YVDD++IA ++ E++ K+ + F MK LG+ R+LG ++ RDR GT+ +SQG +I++VL+R+ +C+ V TP+ + K+SA +++ S+ N P Y VGSLM+A TR D AYAV
Sbjct: 852 PGNKRLINCKWIFKR----NEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQP-EGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLL--YVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQTPLGPQFKLSAATTSEDESQMNEFP--YAQAVGSLMYAMVCTRSDIAYAV 1134
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Match: C6JRI2_SORBI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C6JRI2_SORBI) HSP 1 Score: 176 bits (447), Expect = 6.680e-46 Identity = 101/304 (33.22%), Postives = 167/304 (54.93%), Query Frame = 1
Query: 7 PAGWKAINTKWIFKRRLKENSSVARYKARLVAQGFSHVEGEGFFETNAPVARMVALRTVFSLATEHGIKLKGLDVDADYSNTPIEEELFVKLPPESSPFSRDTPFVRRLRKSLYGLK*NGLNWSNSLHDFLVGIGLDRSTTDSCLYFSRDEGGESGLLVDVYVDDLVIAGHREEV-DEFKHNISQRFRMKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPVEGKVKISAPQSADKPSKPNGNPTEYRGMVGSLMHASTGTRLDAAYAVHKAAHRMEDHVGKTSVHA 915
P G K + KW+FK++L+ + ++ +YKARLVA+G++ EGE +F+T +PVAR+ +R + SLA HG + +DV + N +EEE+++ P ++ V +L KSLYGLK W L G + D C+Y+ GG G+++ +YVDD++I G+ +V E K +S F MK LG ++ ++ R+ NG +T+ Q ++ +VL R+ SEC PTP + V++ + + Y ++GSLM+ ++ TR D ++AV K + R + G T +A
Sbjct: 224 PFGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDYFDTYSPVARLTTIRVLLSLAASHGFLIHQMDVKTAFLNGELEEEIYMDQPDGFIANGQEGK-VCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRF--GGGDGVILCLYVDDILIFGNNLKVIKEVKEFLSNNFEMKDLGEADVIVNIKLSREEGNGWVTLMQSHYVEKVLNRFGYSECTPAPTPYDPSVRLRKNHRIAR------DQLRYSQIIGSLMYLASATRPDISFAVSKLS-RFVSNPGDTHWNA 517 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4847.11966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4847.11966.1 >prot_H-paniculata_contig4847.11966.1 ID=prot_H-paniculata_contig4847.11966.1|Name=mRNA_H-paniculata_contig4847.11966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp MKQLGSLSRVLGTEVRRDRPNGTITISQGSHIREVLKRYHCSECRGVPTPback to top mRNA from alignment at H-paniculata_contig4847:2137..3314- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4847.11966.1 ID=mRNA_H-paniculata_contig4847.11966.1|Name=mRNA_H-paniculata_contig4847.11966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1178bp|location=Sequence derived from alignment at H-paniculata_contig4847:2137..3314- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4847:2137..3314- >mRNA_H-paniculata_contig4847.11966.1 ID=mRNA_H-paniculata_contig4847.11966.1|Name=mRNA_H-paniculata_contig4847.11966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig4847:2137..3314- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |