mRNA_H-paniculata_contig4844.11961.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: A0A6H5KP42_9PHAE (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP42_9PHAE) HSP 1 Score: 297 bits (760), Expect = 1.870e-96 Identity = 136/215 (63.26%), Postives = 160/215 (74.42%), Query Frame = 1
Query: 1 SGNGTTMERNVDSETGCPNHVNWAINPNSAREIESDTTIPAYPMLMGSDDTTDLSMTAGAVGIMLNGVSIFSSWAKDMADSYDESAFALEGDTFDLCGGHASPDGHYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEVGVDEFKYRYYSSCGFDEAFFPFTTNCFRGCCPDGMT 645
+G G TM R +ETGCPNH+NW +NPN+A + + ++PAYPML+ S TTDLS AG +G+M NGVS+FS+WA D Y+++AF LE DTFD CGGHA+P G YHYH T GCLQEQA G HSP +GWSYDGFP+YGQLGP GVEM MCG DGA+ T CLD CSGYE + DEF YRYY+SCGFDE+FFPFT NCFRGCCP G T
Sbjct: 69 AGEGITMARWTATETGCPNHINWPLNPNAAGVMSVNQSVPAYPMLIASGGTTDLSSAAGTIGLMRNGVSMFSAWAVDAVVEYEDTAFYLEADTFDPCGGHATPTGAYHYHGTAGCLQEQAGAVKGE----HSPVLGWSYDGFPIYGQLGPGGVEMKMCGADGAHDTACLDLCSGYEATIDEDEFTYRYYTSCGFDESFFPFTLNCFRGCCPTGNT 279
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: D7FUL4_ECTSI (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUL4_ECTSI) HSP 1 Score: 295 bits (756), Expect = 2.910e-95 Identity = 136/215 (63.26%), Postives = 159/215 (73.95%), Query Frame = 1
Query: 1 SGNGTTMERNVDSETGCPNHVNWAINPNSAREIESDTTIPAYPMLMGSDDTTDLSMTAGAVGIMLNGVSIFSSWAKDMADSYDESAFALEGDTFDLCGGHASPDGHYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEVGVDEFKYRYYSSCGFDEAFFPFTTNCFRGCCPDGMT 645
+G G TM R + TGCPNHVNW INPN I + +IPAYPML+ TTDLS AG +G+M NGVS++S+WA D + Y+++AF LE DT D CGGHA+P G YHYHST GCLQEQA AG HSP +GWSYDGFP+YGQLGP GVEM MCG DGA+ST CLD CSGYE + D F YRYY+SCGFDE+FFPFT NC+RGCCP G+T
Sbjct: 84 AGEGLTMVRWTGTNTGCPNHVNWPINPNPGLVIAINESIPAYPMLLEDGGTTDLSSAAGTIGLMRNGVSMYSAWALDAVEEYEDTAFYLEADTLDPCGGHATPTGSYHYHSTAGCLQEQAGAVAGE----HSPLLGWSYDGFPIYGQLGPGGVEMKMCGADGADSTVCLDLCSGYEASIDEDTFTYRYYTSCGFDESFFPFTLNCYRGCCPTGVT 294
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: A0A8J2X5K3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5K3_9STRA) HSP 1 Score: 161 bits (407), Expect = 5.640e-42 Identity = 92/238 (38.66%), Postives = 125/238 (52.52%), Query Frame = 1
Query: 19 MERNVDSETGCPNHVNWA--------------INPNSAREIESDTT--IPAYPMLMGSDDTTDLSMTAGAVGIMLNGVSIFSSWAKDMADS----YDESAFALEGDTFDLCGGHASPDGHYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEV-GVDEFKYRYYSSCGF--------------DEAFFPFTTNCFRGC 627
+E+ + TGCPNH ++ + + +E D + IPA P+L S + +L + GA+ LNG+ +S AD D + E +FD C GH+ D YHYH P CL QA +AA D GHS Q+GW+ DGFP+YG LGP GVE+ CG GA+STYC D C GYEGE+ GVD +KYRYY + +E ++P+T C+RGC
Sbjct: 43 VEKRTITSTGCPNHESYCTGKPGPAPTCDEEGLKGSGTEAVEQDLSVDIPANPILKSSYEPGELDCSMGAIAYALNGIGFYSGAVGYDADGNCPQLDVADPEAEWISFDCCTGHSDYDAAYHYHFPPSCLLAQANKAAPISD-GHSAQVGWAEDGFPIYGPLGPGGVEIRNCGTSGAHSTYCQDECGGYEGELPGVDNYKYRYYITGKVGDLNTLPSTPMPDSEELYYPYTIRCYRGC 279
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: R1DZX8_EMIHU (EF-hand domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZX8_EMIHU) HSP 1 Score: 159 bits (403), Expect = 2.050e-41 Identity = 91/214 (42.52%), Postives = 112/214 (52.34%), Query Frame = 1
Query: 115 IPAYPMLMGSD------DTTDLSMTAGAVGIMLNGVSIFSSWA------------KDMADSYDESAFALEGDTFDLCGGHASPDG---HYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGY-EGEVGVDEFKYRYYSSCG-----------------FDEAFFPFTTNCFRGCCPDG 639
IPAYP G+ TDLS G VG+ LNGV+I+++WA +D S +A EG+TFD CGGH+S YHYH P CL Q Q G HSPQ+GW YDGFP+YG GPDGV+M+ CG GA+ YCLD+C+GY + +D FKYRYY S + +FFPFT C GC P G
Sbjct: 404 IPAYPFFNGASYEDALAAATDLSEQGGDVGLTLNGVAIYTAWAGSYDXXXXXXIDEDDVMSETSNAVTAEGETFDRCGGHSSGSSAGFQYHYHIPPTCLLAQLGQYIGQ----HSPQVGWMYDGFPVYGPFGPDGVQMIKCGQTGAHEVYCLDACNGYYSDDESIDVFKYRYYMSGNTTDQASLRASPLPTSDPVESSFFPFTPLCSLGCKPSG 613
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: A0A8J2WVX8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVX8_9STRA) HSP 1 Score: 150 bits (378), Expect = 6.440e-40 Identity = 90/230 (39.13%), Postives = 115/230 (50.00%), Query Frame = 1
Query: 43 TGCPNHVNWAINP--NSAREIESDTT------------IPAYPMLMGSDDTTDLSMTAGAVGIMLNGVSIFSSWAKDMADS----YDESAFALEGDTFDLCGGHASPDGHYHYHSTPGCLQEQAMQAAGTDDT---GHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEV-GVDEFKYRYYSSCGFDEA--------------FFPFTTNCFRG 624
TGCPNH ++ NS + TT +PA P L S +L + G + LNGV +S ++ D + E +FD C GH++ G YHYH P CL QA A T GHSPQIGW+ DGFP+YG LGP GVE+ CG GA+STYC D+C GYEGE+ GVD +KYRYY + + +FP+T C RG
Sbjct: 66 TGCPNHESYCTGKPGNSCGDEGKQTTLVEGKEQSLSVEVPANPKLKSSYTAEELDCSMGTIAYALNGVGFYSGAVAFVSGGPCPQLDVADATAEWISFDCCSGHSTGSGGYHYHFPPSCLLAQADADAPVGTTVANGHSPQIGWAQDGFPIYGPLGPGGVEIRNCGASGADSTYCQDACGGYEGELDGVDNYKYRYYVTGKVGDLNALPSNPKPDSEALYFPYTIRCHRG 295
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: A0A8J2X3U2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3U2_9STRA) HSP 1 Score: 145 bits (366), Expect = 3.910e-37 Identity = 90/227 (39.65%), Postives = 116/227 (51.10%), Query Frame = 1
Query: 43 TGCPNHVNWAINP--NSAREIESDTT------------IPAYPMLMGSDDTTDLSMTAGAVGIMLNGVSIFS-SWAKDMADSYDESAFA---LEGDTFDLCGGHASPDGHYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEV-GVDEFKYRYYSSCGFDEA--------------FFPFTTNCFRG 624
TGCPNH ++ NS + TT +PA P L S +L + G V LNGV +S + A D+ + + A E +FD C GH++ G YHYH P CL QA A GHSPQIGW+ DGFP+YG GP GVE+ CG GA++TYC D+C GYEGE+ GVD +KYRYY + + +FP+T C RG
Sbjct: 90 TGCPNHESYCTGKPGNSCGDEGEQTTLVEATEQSLSVEVPANPKLKNSFTAGELDCSMGTVAYALNGVGFYSGAVAFDLGGNCPQLDVADPEAEWISFDCCSGHSTGSGGYHYHFPPSCLIAQANADAPIAG-GHSPQIGWAQDGFPIYGPFGPGGVEIRNCGASGADATYCQDACGGYEGELDGVDNYKYRYYVTGKVGDLNALPSNPKPDSEALYFPYTIRCHRG 315
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: A0A8J2SB93_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SB93_9STRA) HSP 1 Score: 141 bits (356), Expect = 5.720e-37 Identity = 91/235 (38.72%), Postives = 116/235 (49.36%), Query Frame = 1
Query: 43 TGCPNHVNWAIN-PNSAREIESDTT-------------IPAYPMLMGSD-DTTDLSMTAGAVGIMLNGVSIFSSWAKDM----ADSYDESAFALEGDTFDLCGGHASPDGHYHYHSTPGCLQEQAMQAAGTDDT---GHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEV-GVDEFKYRYY--SSCGFDEA------------FFPFTTNCFRGCCPD 636
+GCPNH ++ P + E T+ +PAYP S D +L T G + LNGV FS + D S E +FD C GH++ DG YHYH P CL QA A T GHSPQIGW+ DGFP+YG GP+GV++ CG+ GA++TYC D C G E E+ GVD +KYRYY G E+ +FP+T C RG D
Sbjct: 53 SGCPNHESYCTGKPGRSCGDEGKTSTLVEGTEQCDEVEVPAYPKFKDSQPDPKELDCTMGTIAYALNGVGFFSGAVSYVRGGDCPQLDVSDPEAEWISFDCCTGHSTGDGLYHYHFPPSCLLAQAEADAPMGTTVANGHSPQIGWAQDGFPIYGPYGPEGVQIQNCGSAGAHATYCQDECGGLEMELDGVDSYKYRYYITGKVGDLESLPSNPKPDSEALYFPYTIRCHRGATVD 287
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: D8LCJ6_ECTSI (YHYH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ6_ECTSI) HSP 1 Score: 136 bits (342), Expect = 3.930e-36 Identity = 72/151 (47.68%), Postives = 89/151 (58.94%), Query Frame = 1
Query: 187 IMLNGVSIFSSWAKDMA-DSYDESAFALEGDTFDLCGGHASPDGHYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEVGVDEFKYRYYSSCGFDEAFFPFTTNCFRGCCPD 636
+M+NGV+++SS+A D A +Y +A L GDT DLCGG + DG YHYH+ PGCLQEQAM+A HSP +GW+YDGFP+YGQLGP GVEML CG SG E +FPFT NC+RGCC +
Sbjct: 1 MMINGVAVYSSYADDRAATTYGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQAMKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEMLTCG-------------SGPE---------------------YFPFTINCYRGCCEE 117
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: R1DKM5_EMIHU (YHYH domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DKM5_EMIHU) HSP 1 Score: 137 bits (345), Expect = 1.720e-35 Identity = 95/243 (39.09%), Postives = 117/243 (48.15%), Query Frame = 1
Query: 10 GTTMERNVDSETGCPNHVNWAINPNSAR---------------EIESDTTIPAYPMLMGSDDTTDLSMTAGAVGIMLNGVSIFS----SWAKDMADSYDESAFALEGDTFDLCGGHA-----SPDGHYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEV-GVDEFKYRYYSSCGFDEAF------------FPFTTNCFRGC 627
GT +R + S GCPNH N + A EI IPAYP+L +D + + LNGV I+S S D+ D D +A E +FD CGGHA +G YHYH P CL+ Q G GHSPQIGWS DGFP+YG+LGP GV M G TYCLD CSG+E E+ G+DEF YRYY + + +PF C+RGC
Sbjct: 29 GTHHKRTIVSN-GCPNHYNLCTGKSDAAGCGAIGVEGTATEALEIAYQIDIPAYPVLATENDAWP-ECEKETIAMALNGVPIYSGAVGSGDCDILDLDDANA---EWTSFDFCGGHARCLAFECNGDYHYHFPPSCLETQI----GNLTDGHSPQIGWSLDGFPIYGRLGPGGVTMEHTAQ-GCTGTYCLDDCSGFEMEIPGLDEFTYRYYFNGPLSDLVSLPTDPKPSASDYPFAMKCYRGC 261
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: A0A7S3JW52_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JW52_9STRA) HSP 1 Score: 138 bits (348), Expect = 2.300e-34 Identity = 85/238 (35.71%), Postives = 118/238 (49.58%), Query Frame = 1
Query: 49 CPNHVNWAINPNSAREIESDTTIPAYPMLMGSDDTTD---LSMTAGAVGIMLNGVSIFSSWAK--------DMADSYDESAFALEGDTFDLCGGHA--SPDGHYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGY--EGEVGVDEFKYRYY-----------------------SSCGFDEA--FFPFTTNCFRGCCPDGM 642
CPNH +NPN+A ES IP P + S + D L+ GA+GI+ +G I+S + + + Y SA EG +FD+C HA S YH H P CL +Q Q D HSPQIG+ +DGFP+YG GP+G+ M C A+S YC+D C G+ +G + D + YRYY ++C + +A ++PFT C RGCCP G+
Sbjct: 76 CPNHNYIDLNPNTAYPEESTYDIPLEPKFISSTNINDYLLLNEEGGAIGILYDGSMIYSPYGGRLYGALNFSLDNDYYNSAPYAEGYSFDMCNQHAALSTAASYHSHVPPSCLLDQLGQT----DNEHSPQIGFLFDGFPVYGPRGPNGIMMKSCTESTADSVYCVDKCGGFADDGSIINDGYVYRYYIMGTYKVQASCTWDLWANLDGEATNCDYQQASTYYPFTPLCMRGCCPSGV 309 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4844.11961.1 >prot_H-paniculata_contig4844.11961.1 ID=prot_H-paniculata_contig4844.11961.1|Name=mRNA_H-paniculata_contig4844.11961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp MERNVDSETGCPNHVNWAINPNSAREIESDTTIPAYPMLMGSDDTTDLSMback to top mRNA from alignment at H-paniculata_contig4844:446..3303- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4844.11961.1 ID=mRNA_H-paniculata_contig4844.11961.1|Name=mRNA_H-paniculata_contig4844.11961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2858bp|location=Sequence derived from alignment at H-paniculata_contig4844:446..3303- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4844:446..3303- >mRNA_H-paniculata_contig4844.11961.1 ID=mRNA_H-paniculata_contig4844.11961.1|Name=mRNA_H-paniculata_contig4844.11961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig4844:446..3303- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |