mRNA_H-paniculata_contig4844.11961.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4844.11961.1
Unique NamemRNA_H-paniculata_contig4844.11961.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: A0A6H5KP42_9PHAE (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP42_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 1.870e-96
Identity = 136/215 (63.26%), Postives = 160/215 (74.42%), Query Frame = 1
Query:    1 SGNGTTMERNVDSETGCPNHVNWAINPNSAREIESDTTIPAYPMLMGSDDTTDLSMTAGAVGIMLNGVSIFSSWAKDMADSYDESAFALEGDTFDLCGGHASPDGHYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEVGVDEFKYRYYSSCGFDEAFFPFTTNCFRGCCPDGMT 645
            +G G TM R   +ETGCPNH+NW +NPN+A  +  + ++PAYPML+ S  TTDLS  AG +G+M NGVS+FS+WA D    Y+++AF LE DTFD CGGHA+P G YHYH T GCLQEQA    G     HSP +GWSYDGFP+YGQLGP GVEM MCG DGA+ T CLD CSGYE  +  DEF YRYY+SCGFDE+FFPFT NCFRGCCP G T
Sbjct:   69 AGEGITMARWTATETGCPNHINWPLNPNAAGVMSVNQSVPAYPMLIASGGTTDLSSAAGTIGLMRNGVSMFSAWAVDAVVEYEDTAFYLEADTFDPCGGHATPTGAYHYHGTAGCLQEQAGAVKGE----HSPVLGWSYDGFPIYGQLGPGGVEMKMCGADGAHDTACLDLCSGYEATIDEDEFTYRYYTSCGFDESFFPFTLNCFRGCCPTGNT 279          
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: D7FUL4_ECTSI (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUL4_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 2.910e-95
Identity = 136/215 (63.26%), Postives = 159/215 (73.95%), Query Frame = 1
Query:    1 SGNGTTMERNVDSETGCPNHVNWAINPNSAREIESDTTIPAYPMLMGSDDTTDLSMTAGAVGIMLNGVSIFSSWAKDMADSYDESAFALEGDTFDLCGGHASPDGHYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEVGVDEFKYRYYSSCGFDEAFFPFTTNCFRGCCPDGMT 645
            +G G TM R   + TGCPNHVNW INPN    I  + +IPAYPML+    TTDLS  AG +G+M NGVS++S+WA D  + Y+++AF LE DT D CGGHA+P G YHYHST GCLQEQA   AG     HSP +GWSYDGFP+YGQLGP GVEM MCG DGA+ST CLD CSGYE  +  D F YRYY+SCGFDE+FFPFT NC+RGCCP G+T
Sbjct:   84 AGEGLTMVRWTGTNTGCPNHVNWPINPNPGLVIAINESIPAYPMLLEDGGTTDLSSAAGTIGLMRNGVSMYSAWALDAVEEYEDTAFYLEADTLDPCGGHATPTGSYHYHSTAGCLQEQAGAVAGE----HSPLLGWSYDGFPIYGQLGPGGVEMKMCGADGADSTVCLDLCSGYEASIDEDTFTYRYYTSCGFDESFFPFTLNCYRGCCPTGVT 294          
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: A0A8J2X5K3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5K3_9STRA)

HSP 1 Score: 161 bits (407), Expect = 5.640e-42
Identity = 92/238 (38.66%), Postives = 125/238 (52.52%), Query Frame = 1
Query:   19 MERNVDSETGCPNHVNWA--------------INPNSAREIESDTT--IPAYPMLMGSDDTTDLSMTAGAVGIMLNGVSIFSSWAKDMADS----YDESAFALEGDTFDLCGGHASPDGHYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEV-GVDEFKYRYYSSCGF--------------DEAFFPFTTNCFRGC 627
            +E+   + TGCPNH ++               +  +    +E D +  IPA P+L  S +  +L  + GA+   LNG+  +S      AD      D +    E  +FD C GH+  D  YHYH  P CL  QA +AA   D GHS Q+GW+ DGFP+YG LGP GVE+  CG  GA+STYC D C GYEGE+ GVD +KYRYY +                 +E ++P+T  C+RGC
Sbjct:   43 VEKRTITSTGCPNHESYCTGKPGPAPTCDEEGLKGSGTEAVEQDLSVDIPANPILKSSYEPGELDCSMGAIAYALNGIGFYSGAVGYDADGNCPQLDVADPEAEWISFDCCTGHSDYDAAYHYHFPPSCLLAQANKAAPISD-GHSAQVGWAEDGFPIYGPLGPGGVEIRNCGTSGAHSTYCQDECGGYEGELPGVDNYKYRYYITGKVGDLNTLPSTPMPDSEELYYPYTIRCYRGC 279          
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: R1DZX8_EMIHU (EF-hand domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZX8_EMIHU)

HSP 1 Score: 159 bits (403), Expect = 2.050e-41
Identity = 91/214 (42.52%), Postives = 112/214 (52.34%), Query Frame = 1
Query:  115 IPAYPMLMGSD------DTTDLSMTAGAVGIMLNGVSIFSSWA------------KDMADSYDESAFALEGDTFDLCGGHASPDG---HYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGY-EGEVGVDEFKYRYYSSCG-----------------FDEAFFPFTTNCFRGCCPDG 639
            IPAYP   G+         TDLS   G VG+ LNGV+I+++WA            +D   S   +A   EG+TFD CGGH+S       YHYH  P CL  Q  Q  G     HSPQ+GW YDGFP+YG  GPDGV+M+ CG  GA+  YCLD+C+GY   +  +D FKYRYY S                    + +FFPFT  C  GC P G
Sbjct:  404 IPAYPFFNGASYEDALAAATDLSEQGGDVGLTLNGVAIYTAWAGSYDXXXXXXIDEDDVMSETSNAVTAEGETFDRCGGHSSGSSAGFQYHYHIPPTCLLAQLGQYIGQ----HSPQVGWMYDGFPVYGPFGPDGVQMIKCGQTGAHEVYCLDACNGYYSDDESIDVFKYRYYMSGNTTDQASLRASPLPTSDPVESSFFPFTPLCSLGCKPSG 613          
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: A0A8J2WVX8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVX8_9STRA)

HSP 1 Score: 150 bits (378), Expect = 6.440e-40
Identity = 90/230 (39.13%), Postives = 115/230 (50.00%), Query Frame = 1
Query:   43 TGCPNHVNWAINP--NSAREIESDTT------------IPAYPMLMGSDDTTDLSMTAGAVGIMLNGVSIFSSWAKDMADS----YDESAFALEGDTFDLCGGHASPDGHYHYHSTPGCLQEQAMQAAGTDDT---GHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEV-GVDEFKYRYYSSCGFDEA--------------FFPFTTNCFRG 624
            TGCPNH ++      NS  +    TT            +PA P L  S    +L  + G +   LNGV  +S     ++       D +    E  +FD C GH++  G YHYH  P CL  QA   A    T   GHSPQIGW+ DGFP+YG LGP GVE+  CG  GA+STYC D+C GYEGE+ GVD +KYRYY +    +               +FP+T  C RG
Sbjct:   66 TGCPNHESYCTGKPGNSCGDEGKQTTLVEGKEQSLSVEVPANPKLKSSYTAEELDCSMGTIAYALNGVGFYSGAVAFVSGGPCPQLDVADATAEWISFDCCSGHSTGSGGYHYHFPPSCLLAQADADAPVGTTVANGHSPQIGWAQDGFPIYGPLGPGGVEIRNCGASGADSTYCQDACGGYEGELDGVDNYKYRYYVTGKVGDLNALPSNPKPDSEALYFPYTIRCHRG 295          
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: A0A8J2X3U2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3U2_9STRA)

HSP 1 Score: 145 bits (366), Expect = 3.910e-37
Identity = 90/227 (39.65%), Postives = 116/227 (51.10%), Query Frame = 1
Query:   43 TGCPNHVNWAINP--NSAREIESDTT------------IPAYPMLMGSDDTTDLSMTAGAVGIMLNGVSIFS-SWAKDMADSYDESAFA---LEGDTFDLCGGHASPDGHYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEV-GVDEFKYRYYSSCGFDEA--------------FFPFTTNCFRG 624
            TGCPNH ++      NS  +    TT            +PA P L  S    +L  + G V   LNGV  +S + A D+  +  +   A    E  +FD C GH++  G YHYH  P CL  QA   A     GHSPQIGW+ DGFP+YG  GP GVE+  CG  GA++TYC D+C GYEGE+ GVD +KYRYY +    +               +FP+T  C RG
Sbjct:   90 TGCPNHESYCTGKPGNSCGDEGEQTTLVEATEQSLSVEVPANPKLKNSFTAGELDCSMGTVAYALNGVGFYSGAVAFDLGGNCPQLDVADPEAEWISFDCCSGHSTGSGGYHYHFPPSCLIAQANADAPIAG-GHSPQIGWAQDGFPIYGPFGPGGVEIRNCGASGADATYCQDACGGYEGELDGVDNYKYRYYVTGKVGDLNALPSNPKPDSEALYFPYTIRCHRG 315          
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: A0A8J2SB93_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SB93_9STRA)

HSP 1 Score: 141 bits (356), Expect = 5.720e-37
Identity = 91/235 (38.72%), Postives = 116/235 (49.36%), Query Frame = 1
Query:   43 TGCPNHVNWAIN-PNSAREIESDTT-------------IPAYPMLMGSD-DTTDLSMTAGAVGIMLNGVSIFSSWAKDM----ADSYDESAFALEGDTFDLCGGHASPDGHYHYHSTPGCLQEQAMQAAGTDDT---GHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEV-GVDEFKYRYY--SSCGFDEA------------FFPFTTNCFRGCCPD 636
            +GCPNH ++    P  +   E  T+             +PAYP    S  D  +L  T G +   LNGV  FS     +        D S    E  +FD C GH++ DG YHYH  P CL  QA   A    T   GHSPQIGW+ DGFP+YG  GP+GV++  CG+ GA++TYC D C G E E+ GVD +KYRYY     G  E+            +FP+T  C RG   D
Sbjct:   53 SGCPNHESYCTGKPGRSCGDEGKTSTLVEGTEQCDEVEVPAYPKFKDSQPDPKELDCTMGTIAYALNGVGFFSGAVSYVRGGDCPQLDVSDPEAEWISFDCCTGHSTGDGLYHYHFPPSCLLAQAEADAPMGTTVANGHSPQIGWAQDGFPIYGPYGPEGVQIQNCGSAGAHATYCQDECGGLEMELDGVDSYKYRYYITGKVGDLESLPSNPKPDSEALYFPYTIRCHRGATVD 287          
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: D8LCJ6_ECTSI (YHYH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ6_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 3.930e-36
Identity = 72/151 (47.68%), Postives = 89/151 (58.94%), Query Frame = 1
Query:  187 IMLNGVSIFSSWAKDMA-DSYDESAFALEGDTFDLCGGHASPDGHYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEVGVDEFKYRYYSSCGFDEAFFPFTTNCFRGCCPD 636
            +M+NGV+++SS+A D A  +Y  +A  L GDT DLCGG  + DG YHYH+ PGCLQEQAM+A       HSP +GW+YDGFP+YGQLGP GVEML CG             SG E                     +FPFT NC+RGCC +
Sbjct:    1 MMINGVAVYSSYADDRAATTYGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQAMKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEMLTCG-------------SGPE---------------------YFPFTINCYRGCCEE 117          
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: R1DKM5_EMIHU (YHYH domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DKM5_EMIHU)

HSP 1 Score: 137 bits (345), Expect = 1.720e-35
Identity = 95/243 (39.09%), Postives = 117/243 (48.15%), Query Frame = 1
Query:   10 GTTMERNVDSETGCPNHVNWAINPNSAR---------------EIESDTTIPAYPMLMGSDDTTDLSMTAGAVGIMLNGVSIFS----SWAKDMADSYDESAFALEGDTFDLCGGHA-----SPDGHYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGYEGEV-GVDEFKYRYYSSCGFDEAF------------FPFTTNCFRGC 627
            GT  +R + S  GCPNH N     + A                EI     IPAYP+L   +D          + + LNGV I+S    S   D+ D  D +A   E  +FD CGGHA       +G YHYH  P CL+ Q     G    GHSPQIGWS DGFP+YG+LGP GV M      G   TYCLD CSG+E E+ G+DEF YRYY +    +              +PF   C+RGC
Sbjct:   29 GTHHKRTIVSN-GCPNHYNLCTGKSDAAGCGAIGVEGTATEALEIAYQIDIPAYPVLATENDAWP-ECEKETIAMALNGVPIYSGAVGSGDCDILDLDDANA---EWTSFDFCGGHARCLAFECNGDYHYHFPPSCLETQI----GNLTDGHSPQIGWSLDGFPIYGRLGPGGVTMEHTAQ-GCTGTYCLDDCSGFEMEIPGLDEFTYRYYFNGPLSDLVSLPTDPKPSASDYPFAMKCYRGC 261          
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Match: A0A7S3JW52_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JW52_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.300e-34
Identity = 85/238 (35.71%), Postives = 118/238 (49.58%), Query Frame = 1
Query:   49 CPNHVNWAINPNSAREIESDTTIPAYPMLMGSDDTTD---LSMTAGAVGIMLNGVSIFSSWAK--------DMADSYDESAFALEGDTFDLCGGHA--SPDGHYHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEMLMCGNDGANSTYCLDSCSGY--EGEVGVDEFKYRYY-----------------------SSCGFDEA--FFPFTTNCFRGCCPDGM 642
            CPNH    +NPN+A   ES   IP  P  + S +  D   L+   GA+GI+ +G  I+S +           + + Y  SA   EG +FD+C  HA  S    YH H  P CL +Q  Q     D  HSPQIG+ +DGFP+YG  GP+G+ M  C    A+S YC+D C G+  +G +  D + YRYY                       ++C + +A  ++PFT  C RGCCP G+
Sbjct:   76 CPNHNYIDLNPNTAYPEESTYDIPLEPKFISSTNINDYLLLNEEGGAIGILYDGSMIYSPYGGRLYGALNFSLDNDYYNSAPYAEGYSFDMCNQHAALSTAASYHSHVPPSCLLDQLGQT----DNEHSPQIGFLFDGFPVYGPRGPNGIMMKSCTESTADSVYCVDKCGGFADDGSIINDGYVYRYYIMGTYKVQASCTWDLWANLDGEATNCDYQQASTYYPFTPLCMRGCCPSGV 309          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4844.11961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP42_9PHAE1.870e-9663.26YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
D7FUL4_ECTSI2.910e-9563.26YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A8J2X5K3_9STRA5.640e-4238.66Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
R1DZX8_EMIHU2.050e-4142.52EF-hand domain-containing protein n=2 Tax=Emiliani... [more]
A0A8J2WVX8_9STRA6.440e-4039.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2X3U2_9STRA3.910e-3739.65Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SB93_9STRA5.720e-3738.72Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D8LCJ6_ECTSI3.930e-3647.68YHYH domain-containing protein n=1 Tax=Ectocarpus ... [more]
R1DKM5_EMIHU1.720e-3539.09YHYH domain-containing protein n=1 Tax=Emiliania h... [more]
A0A7S3JW52_9STRA2.300e-3435.71Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4844contigH-paniculata_contig4844:446..3303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score299.3
Seed ortholog evalue1.4e-78
Seed eggNOG ortholog2880.D8LCJ5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.YHYH protein
EggNOG OGs2CZR0@1,2SBB2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size648
Cds size630
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.4709945-CDS-H-paniculata_contig4844:445..5231622930434.4709945-CDS-H-paniculata_contig4844:445..523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4844 446..523 -
1691481290.603612-CDS-H-paniculata_contig4844:445..5231691481290.603612-CDS-H-paniculata_contig4844:445..523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4844 446..523 -
1622930434.485861-CDS-H-paniculata_contig4844:910..10121622930434.485861-CDS-H-paniculata_contig4844:910..1012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4844 911..1012 -
1691481290.6204817-CDS-H-paniculata_contig4844:910..10121691481290.6204817-CDS-H-paniculata_contig4844:910..1012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4844 911..1012 -
1622930434.5081086-CDS-H-paniculata_contig4844:1557..16081622930434.5081086-CDS-H-paniculata_contig4844:1557..1608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4844 1558..1608 -
1691481290.6328669-CDS-H-paniculata_contig4844:1557..16081691481290.6328669-CDS-H-paniculata_contig4844:1557..1608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4844 1558..1608 -
1622930434.5247838-CDS-H-paniculata_contig4844:2088..22901622930434.5247838-CDS-H-paniculata_contig4844:2088..2290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4844 2089..2290 -
1691481290.644911-CDS-H-paniculata_contig4844:2088..22901691481290.644911-CDS-H-paniculata_contig4844:2088..2290Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4844 2089..2290 -
1622930434.5467417-CDS-H-paniculata_contig4844:2769..28911622930434.5467417-CDS-H-paniculata_contig4844:2769..2891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4844 2770..2891 -
1691481290.6569192-CDS-H-paniculata_contig4844:2769..28911691481290.6569192-CDS-H-paniculata_contig4844:2769..2891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4844 2770..2891 -
1622930434.561661-CDS-H-paniculata_contig4844:3210..32851622930434.561661-CDS-H-paniculata_contig4844:3210..3285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4844 3211..3285 -
1691481290.6699383-CDS-H-paniculata_contig4844:3210..32851691481290.6699383-CDS-H-paniculata_contig4844:3210..3285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4844 3211..3285 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930434.575365-UTR-H-paniculata_contig4844:3285..33031622930434.575365-UTR-H-paniculata_contig4844:3285..3303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4844 3286..3303 -
1691481290.689443-UTR-H-paniculata_contig4844:3285..33031691481290.689443-UTR-H-paniculata_contig4844:3285..3303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4844 3286..3303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4844.11961.1prot_H-paniculata_contig4844.11961.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4844 446..3285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4844.11961.1

>prot_H-paniculata_contig4844.11961.1 ID=prot_H-paniculata_contig4844.11961.1|Name=mRNA_H-paniculata_contig4844.11961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp
MERNVDSETGCPNHVNWAINPNSAREIESDTTIPAYPMLMGSDDTTDLSM
TAGAVGIMLNGVSIFSSWAKDMADSYDESAFALEGDTFDLCGGHASPDGH
YHYHSTPGCLQEQAMQAAGTDDTGHSPQIGWSYDGFPMYGQLGPDGVEML
MCGNDGANSTYCLDSCSGYEGEVGVDEFKYRYYSSCGFDEAFFPFTTNCF
RGCCPDGMT*
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mRNA from alignment at H-paniculata_contig4844:446..3303-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4844.11961.1 ID=mRNA_H-paniculata_contig4844.11961.1|Name=mRNA_H-paniculata_contig4844.11961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2858bp|location=Sequence derived from alignment at H-paniculata_contig4844:446..3303- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTGGGAATGGGACCACGATGGAGCGCAATGTAGACTCGGAGACAGGTTG CCCGAACCATGTCAACTGGGCGATCAACCCCAATTCCGCCAGGGTAAGAC TTCCCTGACTCTTGAGCTTACTATTTTGCCTAATTTTCTTTGTAAGCTAC TGCCCGTGCTGTTGAGCGCCGTTCGACCAACTTGGAGATCTTAGTGCAAC GAAAGATTACAGCTTCTACTTGTTTTGGCCTCCATCATTGAGCTCTTTCC GAGGCTTATTCCAATGTGCTTTATGGCACACGATGAAATGTGTTTTGGCA GCGACACGCTCGCATGACGTCTGTCTTTTAATCGCCAAACATCTGCATAA ACGAGTTGCCATTCCTGGAATCTCAGCGCAGAACGTTTCCTCTGTTTGTC TGCGTGTTGCAGGAAATTGAATCTGACACTACTATTCCGGCGTACCCCAT GCTGATGGGTTCTGATGATACTACCGACCTTAGCATGACAGCAGGAGCGG TGGGCATCATGCTGAACGGTGTTTCCATTTTCAGGTACGCTCATCTATAG TTTACTGACTGACGCACTGCTCCAGCGCTTGCGTGACGCCTGTCCTTGAT TCACTATGTTATCTCGGCTGGTTTGGGAATCAACGTAACGTGTGCTAACA TCTCATTTGAATCTCTCTGCGAACTCTGTAGGTATGTTATTTCGAGATAT TTGTACTCGAAAAGTATGTGAGAGCATGGTATCCAACATTGTGTTGATAG AAAAGAACCCTACCCGATTTCAGCTCAGCCTTCCCCAAGCTAAACTGCAC GTTTTCTCAATTTGCTGCTATTTAGGCACCGGATAAGCAATTTCGGGATA CAATCGTGCCGACCCTCCGGGTCACCAAAACTGCCCACCTCTGGGTTTCT TTACATGATTTGTCGGAGACTTCAATCCTCTCTTGCTAGCAACTGTCCCG TAATAACACAATTTTCCTAACCTCGTCGACCACATGATACACTCCCTTCG TGTTTTTAACCAGCTCGTGGGCTAAAGACATGGCAGACTCGTACGATGAA TCAGCCTTCGCCCTCGAGGGAGACACGTTCGACCTCTGCGGGGGGCACGC TAGCCCGGACGGTCACTACCACTACCACAGTACCCCCGGATGTCTCCAGG AACAGGCCATGCAGGCGGCGGGAACCGATGATACCGGGCACTCCCCACAG ATCGGGTGGTCTTACGTGAGTAACCTGCAGAACACACGAGGAGAAGGGAG GGTGTAATCGACGTGCCAATTTCGCGTAGGTCAACTCGTCGTCATCATCA ACCCATGGAGATATCGTTACGCACTTTGTGCTCACGGCCACGAGTATAGT CCTACGCGGTCAAAGAAAGCGAGGGGTGATAGGCAGGGAGGGCGCAAGAC GGTCGAGCTCCGCCCAACACTGACCTTCCGTTAAAACAATGTAGGTGTGT TGCCTGCCAGTTGATCCATGTCACCGTGCCTACAGCAAGTAGCGCATCAC CGGTTGTACGGGACGGTGTGTATGCAACCCCATTTATTGATTTCGGTGCC TGTGCTCGTTACGAAAGGAAAATCTCCAAAACGTGGGTCCTACAGTGCCA TAAAAACATAAGATCCTCGCAATACCCGCATCCCCAATGTAATGATTTAG AGCCGTGCACCCATCCTTCCCCTCTGTCGACCCTGCGCTCTTCAGGATGG TTTCCCGATGTACGGACAGCTTGGTCCCGACGGGGTGGAAATGCTGGTAA GCTAAGCTACAATGGGCCCTTGGGCACATCACAAAACTGCATCGAACGCG ATGTTGGTTTTACCCAAACCCGCGTTCCCACCGTTGAATGCATTTTAGCG CCTTCTTGACGTGGTGCTTTCGCGTGAGTGCAGGCTGAGTGTTCACTACA ACGTGAACATTGCATAGTTGCATCGGTGGGGCTATAAGAGGACAGATGTC TCTACTCCCGTGCTCTCCCGAGGCATAGCGTCCATTGCCAAAGGGTAAAC GGAGCTAGGGTCTAAGTCGAGAAAATTTGAGCTCTTGTGACGAGACTAAT CGTGAGTTCAGCATGGAAGCACCGAAGGAGATTGGGTTCATCGCTCGTAG TACTATTTTCCAAAGGAGTCTAGTGAATGTATGCTTCGTAACGTTTGCTG TGGTGGTAGACGTTTTTCCGTGTTCTTCCAATTTATGTCCGTGTCTATTC CCACGATGGGCTTTCCAAACAGACGCACCACATCGCCTCGCTAAAACTTG AGTTGGAACACAATTATTTTTGTCTTTTTCTGTGGAAACAGATGTGCGGT AACGATGGGGCTAACAGCACATACTGCCTGGACTCCTGCTCTGGTTATGA AGGAGAAGTTGGCGTAGATGAGTTCAAGTACCGCTACTATTCGGTAAGCT TTTTACGCGTCGGGCGTAGGCGATGAATTTCCACTCGTCATCGTAACATG AAGCATTCATCGTAGGATAGTCTGAAATTCAAACCCGATGTGACCGAACT CTCTAATTTATTCTGCAAAAAGTCAAACCTTTGACGTATACAGGTGAAAT ACTTGTCCCTTGTTGGTTTACTCTACGGTGATTCGGAAGAACCGCTACTG TCCATAGTGTAGTTTCGACGTGTCTCATATTTTCTATAGTCGTTGGTGTA GGATACACATATCTATTTCACGAAGTATGCAAGACCATTGTCAACCTGGT ACGTCGATTATCGATGTTTTGAACAATTGTTATACACCTTCCCTCTCCCC GGTCGTTGAAACGCCTCGAAATTATTGCAGTCGTGCGGGTTTGATGAGGC TTTCTTCCCCTTCACCACGAACTGCTTCCGCGGATGCTGCCCCGACGGTA TGACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4844:446..3303-

>mRNA_H-paniculata_contig4844.11961.1 ID=mRNA_H-paniculata_contig4844.11961.1|Name=mRNA_H-paniculata_contig4844.11961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig4844:446..3303- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCGCAATGTAGACTCGGAGACAGGTTGCCCGAACCATGTCAACTG
GGCGATCAACCCCAATTCCGCCAGGATGGAGCGCAATGTAGACTCGGAGA
CAGGTTGCCCGAACCATGTCAACTGGGCGATCAACCCCAATTCCGCCAGG
GAAATTGAATCTGACACTACTATTCCGGCGTACCCCATGCTGATGGGTTC
TGATGATACTACCGACCTTAGCATGACAGCAGGAGCGGTGGGCATCATGC
TGAACGGTGTTTCCATTTTCAGGAAATTGAATCTGACACTACTATTCCGG
CGTACCCCATGCTGATGGGTTCTGATGATACTACCGACCTTAGCATGACA
GCAGGAGCGGTGGGCATCATGCTGAACGGTGTTTCCATTTTCAGCTCGTG
GGCTAAAGACATGGCAGACTCGTACGATGAATCAGCCTTCGCCCTCGAGG
GAGACACGTTCGACCTCTGCGGGGGGCACGCTAGCCCGGACGGTCACTAC
CACTACCACAGTACCCCCGGATGTCTCCAGGAACAGGCCATGCAGGCGGC
GGGAACCGATGATACCGGGCACTCCCCACAGATCGGGTGGTCTTACCTCG
TGGGCTAAAGACATGGCAGACTCGTACGATGAATCAGCCTTCGCCCTCGA
GGGAGACACGTTCGACCTCTGCGGGGGGCACGCTAGCCCGGACGGTCACT
ACCACTACCACAGTACCCCCGGATGTCTCCAGGAACAGGCCATGCAGGCG
GCGGGAACCGATGATACCGGGCACTCCCCACAGATCGGGTGGTCTTACGA
TGGTTTCCCGATGTACGGACAGCTTGGTCCCGACGGGGTGGAAATGCTGG
ATGGTTTCCCGATGTACGGACAGCTTGGTCCCGACGGGGTGGAAATGCTG
ATGTGCGGTAACGATGGGGCTAACAGCACATACTGCCTGGACTCCTGCTC
TGGTTATGAAGGAGAAGTTGGCGTAGATGAGTTCAAGTACCGCTACTATT
CGATGTGCGGTAACGATGGGGCTAACAGCACATACTGCCTGGACTCCTGC
TCTGGTTATGAAGGAGAAGTTGGCGTAGATGAGTTCAAGTACCGCTACTA
TTCGTCGTGCGGGTTTGATGAGGCTTTCTTCCCCTTCACCACGAACTGCT
TCCGCGGATGCTGCCCCGACGGTATGACGTGATCGTGCGGGTTTGATGAG
GCTTTCTTCCCCTTCACCACGAACTGCTTCCGCGGATGCTGCCCCGACGG
TATGACGTGA
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