mRNA_H-paniculata_contig4829.11932.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4829.11932.1
Unique NamemRNA_H-paniculata_contig4829.11932.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: D7G5E4_ECTSI (Similar to arginine/serine-rich splicing factor 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E4_ECTSI)

HSP 1 Score: 307 bits (787), Expect = 3.180e-95
Identity = 204/265 (76.98%), Postives = 211/265 (79.62%), Query Frame = 1 
Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGGSGGRGRSRSPRRXXXTPPPRRSPPXXXXXXXXXXXXXXYGGRSRSRSPGRDRY 795
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNK  VWVARNPPGFAFVWF+DDRDA DAVRE+DG+SI GREWRVE+SHQRGRDRGPPG XXXXX              XXXXXXXXXXXXXXX              YKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDM+RAVRELDDTYFA+RRIRVDYDDGGSG          XX +PPPRR   XXXXXXXXXXXXXX      SRSP RDRY
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNK--VWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGXXXXX--------------XXXXXXXXXXXXXXXYGAPRVGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGXXXXXXPAXXXXRSPPPRRGSXXXXXXXXXXXXXXXXXXXXXSRSPIRDRY 249
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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: A0A6H5L109_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L109_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 7.380e-63
Identity = 151/219 (68.95%), Postives = 152/219 (69.41%), Query Frame = 1 
Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEI------------------------------------------SHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 531
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNK  VWVARNPPGFAFVWF+DDRDATDAVREVDGRSI GREWRVEI                                          SHQRGRDRGPPG      GYG  XXXXXXXXXXXXXXXXXXXXXXXX              YKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNK--VWVARNPPGFAFVWFADDRDATDAVREVDGRSIAGREWRVEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHQRGRDRGPPGG-----GYGGGXXXXXXXXXXXXXXXXXXXXXXXX--------------YKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 198
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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: A0A835Z7K1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K1_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.820e-43
Identity = 112/237 (47.26%), Postives = 136/237 (57.38%), Query Frame = 1 
Query:    1 MGD--VPGTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGGSGGRGRSRSP--RRXXXTPPPRR 699
            MGD    GTKV++GN+     E +LRDEF+++G L +  VW+ARNPPGFAFVWFSD RDA DAVR +DG  +NG+  RVEISH R   R    XX    GYG       XXXXX                            +KVRI+ LP    W+ELKDF+RK GD+ YA+    EGVAEF++RD M RA REL DT F +RRI ++ +D     R  SRSP  RR     PPRR
Sbjct:    1 MGDREESGTKVFIGNVEG-ISEGELRDEFARYGRLTQ--VWIARNPPGFAFVWFSDIRDAEDAVRGLDGSQLNGKPIRVEISHNRRGRRXXXXXXGRGGGYGDRDRGYDXXXXXSSRPPPRAGGAPRKTG------------FKVRISNLPANAHWTELKDFMRKVGDIIYANAENGEGVAEFADRDGMERAYRELHDTTFGDRRIVIEMNDESDRYRRDSRSPPPRRGRSRTPPRR 222
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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: A0A5D6YQ52_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ52_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.080e-30
Identity = 91/221 (41.18%), Postives = 121/221 (54.75%), Query Frame = 1 
Query:   16 GTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGGSGGRG---RSRSP 666
            GT+V+VG L      R+++D FS++G ++  ++WVARNPPGFAFV F D RDA DA+R +DGR   G   RVEI+  RG  R   G       +GXXXXXXXX                                ++VRIT LP G  W  +KDF+R  G+VTY D+  D   VAEF +++DM  A+++LDDT F    +R+  + GG G      RSRSP
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFSRYGHVS--NIWVARNPPGFAFVDFEDPRDAEDAIRALDGRDFLGGRIRVEIA--RGGSRRDDGGRGRGGDFGXXXXXXXXRDRGFDRGAGRNPPQRTD--------------FRVRITDLPRGTDWRNIKDFLRTGGEVTYCDIENDGTAVAEFQSKEDMDNAIKKLDDTEFRGNYVRLIPESGGGGNDSSSRRSRSP 204
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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: A0A6G0XSF8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XSF8_9STRA)

HSP 1 Score: 125 bits (314), Expect = 4.620e-29
Identity = 75/217 (34.56%), Postives = 113/217 (52.07%), Query Frame = 1 
Query:   22 KVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGGSGGRGRSRSPRR 672
            +V+VG +  +   R++ + F +FG++   +VW+ARNPPGFAFV F D RDA DA++++DG+ + G   RV+++   G  RG  G        G                                        +KVRITGLP    W ++KDFVRKAGDV++ D+ GD+ + E +++ D+   +R+LDDT F  RR+ +         R RS+SPRR
Sbjct:    5 RVYVGGIPKSAGNREIEEAFQRFGKI--VNVWIARNPPGFAFVDFEDPRDADDAIKDMDGKELLGERIRVQMARG-GVRRGGRGDRDRSYRDGSSDRHRSSG-------------------------------HKVRITGLPRNADWRDVKDFVRKAGDVSFCDMDGDDAIVELASKFDLENVIRKLDDTEFDGRRVSI------KAVRDRSQSPRR 181
[Close]
BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: A0A7S3PMS3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMS3_9STRA)

HSP 1 Score: 127 bits (320), Expect = 5.390e-29
Identity = 109/206 (52.91%), Postives = 136/206 (66.02%), Query Frame = 1 
Query:   19 TKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGG 636
            +K++VGN+     E +L D+F K+G+++  SVW+ARNPPGFAFV F D RDA DA+++++ R   GR  RVE+S +R          XXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXX            ++V ITGLP    W +LKDF+R+ G+V YADVR  EGVA+F   DDM RAVR+LD T F    I +  D GG
Sbjct:    2 SKLYVGNIPDDTREGELEDKFKKYGKIS--SVWLARNPPGFAFVTFDDPRDAEDAMKDMNDREFLGRRIRVELSKER---------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHGRHRDYRQGEFRVIITGLPSRCSWQDLKDFLRRGGEVCYADVRDGEGVADFLTADDMDRAVRKLDGTDFDGGPITIKEDRGG 196
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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: G4YPP5_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YPP5_PHYSP)

HSP 1 Score: 122 bits (307), Expect = 1.590e-28
Identity = 74/196 (37.76%), Postives = 103/196 (52.55%), Query Frame = 1 
Query:   16 GTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGR-DRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMARAVRELDDTYF 597
            GT+V+VG L      R+++D F+++G ++  ++WVARNPPGFAFV F D RDA DA+R +DGR   G   RVE++    R D G   XXX   GYG                                        Y+VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF  +DDM  A+++LDDT F
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFNRYGHVS--NIWVARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELARGGSRRDGGGRXXXXDRGGYGGRGGDRFDRGRNPPQRTD----------------------YRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQTKDDMEDAIKKLDDTEF 173
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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: A0A8K1CTI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTI4_PYTOL)

HSP 1 Score: 122 bits (306), Expect = 1.090e-27
Identity = 86/221 (38.91%), Postives = 117/221 (52.94%), Query Frame = 1 
Query:   16 GTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGR-DRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGGSGGRGRSRSPRR 672
            GT+V++G L      R+++D FS++G +  A++W+ARNPPGFAFV F D RDA DA+R +DGR   G   RVE++    R DR    XXXXXX  G                                        ++VRIT LP G+ W ++KD +R AG+VT+ +V  D   +AEF +RDD+  A+ +LDD  F    IR+      S  R RSRSPRR
Sbjct:    2 GTRVYIGGLPRDATSREVQDGFSRYGHI--ANIWIARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELAKGGSRRDRXXXXXXXXXXRGGDRFERGGRNPPQRTE-------------------------FRVRITDLPRGVDWRDVKDHLRTAGEVTFCNVENDGTAIAEFQSRDDVQNAIEKLDDKEFRGSYIRITA--ASSEERSRSRSPRR 193
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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: H3GHB6_PHYRM (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3GHB6_PHYRM)

HSP 1 Score: 122 bits (306), Expect = 1.810e-27
Identity = 96/218 (44.04%), Postives = 130/218 (59.63%), Query Frame = 1 
Query:   16 GTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGGSGGRGRSRSP 666
            GT+V+VG L      R+++D F+++G ++  ++WVARNPPGFAFV F D RDA DA+R +DGR   G   RVE++  RG  R             XXXXXXXXXXXXXX    XXXXXXX               ++VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF ++ D+  A+++LDDT F    +RV  + G S  R RSRSP
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFNRYGHVS--NIWVARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELA--RGGSR--------RDXXXXXXXXXXXXXXXXXDDDRXXXXXXXRDRFERGRNPPQRTDFRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQSKQDLDDAIKKLDDTEFRGSYVRVAAEGGDSARRSRSRSP 207
[Close]
BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: A0A0W8CUR2_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CUR2_PHYNI)

HSP 1 Score: 121 bits (303), Expect = 2.170e-27
Identity = 83/228 (36.40%), Postives = 114/228 (50.00%), Query Frame = 1 
Query:   22 KVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADV-RGDEGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGGSGGRGRSRSPRRXXXTPPPRRS 702
            +V+VGNL     ER+L D+F +FG L    +     PP FAF+ F +++DA+DAVR ++  + +G   RVE+S  RG D   P                                                  Y+V+ITGLP+ M W +LKDF+RK GDV ++DV R   G A F+  D+M RA+R+LD T     R+R+  +D     +GRSRSP  XXX  PPRRS
Sbjct:    3 RVFVGNLPEDVRERELSDKFERFGRLTSVRIKFPARPPPFAFLTFENEQDASDAVRSMNNSTFSGSRIRVEMS--RGIDDARP----------------------------------------------RGTQYRVKITGLPDTMSWQDLKDFLRKGGDVVHSDVDRRGNGSASFATPDEMRRAIRKLDGTDLDGERVRIREEDA----KGRSRSPXXXXXXXPPRRS 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5E4_ECTSI3.180e-9576.98Similar to arginine/serine-rich splicing factor 7 ... [more]
A0A6H5L109_9PHAE7.380e-6368.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7K1_9STRA1.820e-4347.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6YQ52_9STRA1.080e-3041.18Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6G0XSF8_9STRA4.620e-2934.56Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3PMS3_9STRA5.390e-2952.91Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
G4YPP5_PHYSP1.590e-2837.76Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A8K1CTI4_PYTOL1.090e-2738.91Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GHB6_PHYRM1.810e-2744.04Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]
A0A0W8CUR2_PHYNI2.170e-2736.40Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4829contigH-paniculata_contig4829:2272..7997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03041
Exons5
Model size2532
Cds size840
Taxonomic scopeEukaryota
Seed ortholog score310.5
Seed ortholog evalue8.2e-82
Seed eggNOG ortholog2880.D7G5E4
Preferred nameNPL3
KEGG koko:K12893,ko:K12896,ko:K14651
KEGG Pathwayko03022,ko03040,ko05168,ko05202,map03022,map03040,map05168,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000375,GO:0000377,GO:0000398,GO:0000993,GO:0001067,GO:0001069,GO:0001098,GO:0001099,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006415,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022411,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031369,GO:0031370,GO:0031503,GO:0031554,GO:0032268,GO:0032269,GO:0032784,GO:0032786,GO:0032968,GO:0032984,GO:0032991,GO:0033036,GO:0034243,GO:0034248,GO:0034249,GO:0034613,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042886,GO:0043043,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043242,GO:0043244,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045184,GO:0045292,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051641,GO:0051649,GO:0060255,GO:0060567,GO:0065007,GO:0070063,GO:0070717,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904594,GO:1990904,GO:2000112,GO:2000113,GO:2000804,GO:2000805,GO:2001141
EggNOG free text desc.RNA splicing
EggNOG OGsCOG0724@1,KOG0106@2759
Ec32 ortholog descriptionSR RNA splicing protein
Ec32 orthologEc-06_010740.1
COG Functional cat.J
Best tax levelEukaryota
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4829.11932.1prot_H-paniculata_contig4829.11932.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4829 3964..7997 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930430.2557213-UTR-H-paniculata_contig4829:2271..39631622930430.2557213-UTR-H-paniculata_contig4829:2271..3963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4829 2272..3963 -
1691481288.678633-UTR-H-paniculata_contig4829:2271..39631691481288.678633-UTR-H-paniculata_contig4829:2271..3963Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4829 2272..3963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930430.2706296-CDS-H-paniculata_contig4829:3963..41791622930430.2706296-CDS-H-paniculata_contig4829:3963..4179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4829 3964..4179 -
1691481288.6928532-CDS-H-paniculata_contig4829:3963..41791691481288.6928532-CDS-H-paniculata_contig4829:3963..4179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4829 3964..4179 -
1622930430.2989843-CDS-H-paniculata_contig4829:4354..44481622930430.2989843-CDS-H-paniculata_contig4829:4354..4448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4829 4355..4448 -
1691481288.7046106-CDS-H-paniculata_contig4829:4354..44481691481288.7046106-CDS-H-paniculata_contig4829:4354..4448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4829 4355..4448 -
1622930430.3187509-CDS-H-paniculata_contig4829:6583..68761622930430.3187509-CDS-H-paniculata_contig4829:6583..6876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4829 6584..6876 -
1691481288.7144387-CDS-H-paniculata_contig4829:6583..68761691481288.7144387-CDS-H-paniculata_contig4829:6583..6876Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4829 6584..6876 -
1622930430.3334825-CDS-H-paniculata_contig4829:7206..73321622930430.3334825-CDS-H-paniculata_contig4829:7206..7332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4829 7207..7332 -
1691481288.7268038-CDS-H-paniculata_contig4829:7206..73321691481288.7268038-CDS-H-paniculata_contig4829:7206..7332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4829 7207..7332 -
1622930430.3512073-CDS-H-paniculata_contig4829:7886..79971622930430.3512073-CDS-H-paniculata_contig4829:7886..7997Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4829 7887..7997 -
1691481288.7354274-CDS-H-paniculata_contig4829:7886..79971691481288.7354274-CDS-H-paniculata_contig4829:7886..7997Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4829 7887..7997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4829.11932.1

>prot_H-paniculata_contig4829.11932.1 ID=prot_H-paniculata_contig4829.11932.1|Name=mRNA_H-paniculata_contig4829.11932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=280bp
MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFV
WFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGGGGGGGGYG
GGGGGYGGGGGGGYGGGGGYGGGGGGYGAPRTGGAAPRTGYKVRITGLPE
GMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMARAVRELDDTYFA
ERRIRVDYDDGGSGGRGRSRSPRRRSRTPPPRRSPPRGRSRSPVGRGRSP
YGGRSRSRSPGRDRYGSWHTGHSRQLSGQ*
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mRNA from alignment at H-paniculata_contig4829:2272..7997-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4829.11932.1 ID=mRNA_H-paniculata_contig4829.11932.1|Name=mRNA_H-paniculata_contig4829.11932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5726bp|location=Sequence derived from alignment at H-paniculata_contig4829:2272..7997- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGACGTTCCAGGGACGAAGGTGTGGGTGGGGAACCTGGGAAGTAC
TTGCGAGGAGCGAGACCTCCGGGATGAGTTCAGCAAATTTGGGGAACTCA
ACAAGGCGAGTGTGTCCACATTCTTCAAATATATCTGAACAGCGAGAAAT
ATCTGATTTATAGTATTCACCCAGGAAGCGGGACCCTCTGAAGATGTCAC
ATCCCCAGTTCATGGAACCAAGCAGGACAAGGCGCGGTACAAACGAGGCA
CCCACCCCTGAACTATCTACAGACCAGGAAGTAGGAGGGATGCAGGGGGG
CATGCTAGAGTCACCATGCTTCCGTTGTTGTGTTTATTTTATATCGCCCC
GTTGATCTAAATGGGGGGTCCTTGGTGTTTTTGTGGCAATCCACTCTGTG
CCCCGAGTTTTTTTTGTATTGCTTTTTGTGTCTTGCTTTTTGTGTGGCCT
AGAAGTAATGCGTCATCACTAGGACGTAAAGTATTAGCATGGACCCGCTG
TCTGTGTCTGCTTTTATGTGTACGGTGAGCGAATCATCTCTTTGTAGTGT
GACCCGCGGCTTAGTCATGGGTCCGTTGATCCTTCCTTACATGTTTTCCC
TTACCTAAAAGTTTTTTTTTTCGTCGTGTGGTCTTTCCTGACGTTTTCGT
CGTCGTTGTCCACAGGTCTGGGTCGCTCGTAACCCTCCCGGGTTTGCGTT
TGTCTGGTTCTCCGATGACCGGGATGCTACTGATGCTGTGCGTGAGGTGG
ACGGCCGGAGCATCAACGGACGGGAGTGGCGTGTCGAGATCGTAAGTTTA
TTTACTGCCTTTCACATTCCCTAGTGCCTTTTTTGAAAACTCCAAATCTC
AAGCCACATTTATTTCCCTTTGAAATACAGTTGGACTCTCCTGCATAAGC
GAACGGGGTAGTCAAATTATAGTTTTCCTCTTCTCCCTACTCCGCCCCGC
ACCTTTCCTTTTACCCCTGTCCATCCCTTCGTACTACTCTCGCGACTTTA
TCTCCTACTGGATGCTGGATTTGATCGCACTCTTGCGAACAGTTACGTCT
ATACAATCGCCTCCTACCTTAATCACATTGTGACTCCCGGCTTTTACCTA
TTCAATTCTGATGATATCCAGTCTCACCAGAGAGGTCGTGACCGCGGGCC
GCCCGGGGGCGGGGGCGGGGGAGGGGGCTACGGTGGTGGCGGGGGGGGGT
ATGGAGGAGGAGGCGGTGGAGGCTACGGAGGCGGGGGGGGCTACGGTGGC
GGAGGCGGTGGCTATGGCGCCCCGCGGACCGGTGGTGCCGCACCCCGGAC
GGGGTACAAGGTCCGCATCACCGGTTTGCCCGAGGGTATGCGCTGGTCGG
AATTGAAGGACTTCGTGCGCAAGGCGGGGGATGTGACTTATGCCGACGTA
CGCGGTGACGAGGGGTACGTTCTTCCGTCTTCATTCTTTTTCTCGCCTCT
CCTGTCTTTCTCCCTACGCTGGTTCTTTTTGTGTGTTTATTTTGCCCATC
TATCTGTTCGCCTTTTTTATACTTCCTTCATATTTTGGTCTGAGACGGTA
ATTCGGATTTCTGTTGCGCAATGTTGGCGTTGTTTCCGTCTTCTGACGTT
TTTCTGTTTCAAGCGTCTTGACATCTATTCGGGTTTGGTTGTAATCTCTT
TCGCCCAGAGATGGGTCCACCGTGTAGAGTGTATGTGGGTCGTTTTTTTT
TTTTTCATTTTCTGCCCCGTGGTAGATTTCTTGGACTTTACACTCACCCC
TCTCGTTTCCGAACTAATCCGCCCTCTGCCTTGCTGCGTCGGCGGCGGCA
CCGCAAGTGGCACAGAATAAGCAAAAGCCGGCCCCTTTCTCATCCGTTCC
CATTCACCAACTGGAAGTAGACCATGGCGCAATCTTCGTCGCCTTCAGCA
CGCAACGTCCTTTCACAAATTGCGATTGGGTGGCGCTTCTTCGAGGACGA
TATTGCTCCCTACCCACCCTGCTTCGAAATCTGCAAGTATCGCCCGTAAA
GAAAAAGTTCAACACTTCAACCGTCAAGCAAGGGTTGTCCGATCGTCGTG
GCTGTCGGCAAACAAACGCATCTGAGACTGCAACTCTGCTTCAGCCTGTC
ATCGTCAAATACACCTAGTGTGAACTTCAAGAACTACAGAGTTCGTCCAC
CATACATCACGCTTATATGGAGGTGTTGTCACCCTAACTGTGAGCTGTGG
TTTCGACAGCTTGGGGCGGGGGTTTGGATTGGGTGGTGTTGGAGGCAGCG
GCAGAGGGATTGAGGTTTGTGTGATTCATAATTTAATCACTATGGTACTA
CAATTCATGTCTTGGTTTTGGGTCAGCACAGATTTTTGTTTGGTAAGTCT
TCTCAGCAGCTTGGCGCTGAGCCATTGTGTCTTGTGCTGCCTTGTTGAAA
TAGACGGTATCACCGAAGGCAGCGTATGAGGAAAAGGATTTATGTACTCT
CTGGATGACCCACGTTTCCTCTCCAGACGGCGACGAAATTGGTCCTCTTG
GGGTGACGAAACAATCACAACAGTTACCCGCGATGGGGTATGGGGTGCTC
TTCTACCTTCTAGCATCATTCACACGTGAAGCATGCCGTGGTGGTGATGT
GATTTTTACAGCGTCGGCTGCGGTCTTATGACTGTAGCAATAAAGTGGGC
GGCTGTTTGTTCAGTCTGTGGACGGTACTACCGTACCTCCGGGGTTTCGA
TTGTTGGTGGGAACTTGGGATCTTTCCTTCATCCATTGCGAGAGACAGAG
AGTCGCTTCGTGTGGAATCAACCGCGGGAAATGGCCAATGGCGCTCCCTA
CATACCACCGCTGCTGCCTTCATATTTGGAAAACCCCCCTTCTGTGCTGC
ACTACAACCCACCTACTACGATCAACCCCAACATGATGTCTACACTACAC
TACACTACACTACGCTACACTCCATGACTACTCTCCACGTGTCGTCGGCT
ATCGACGCTGCAAATCGCATCTCCTACTCCATCATTGGTCTGGAAACCGA
GTCGGTACTGTACTTTGTCATGCGCTTCTCCTTTTACAGCGCGGTAGGGT
TTCTTGTCGGCCGCGTTGGCTTGTAGTGTAACATGATAACTACTCCTCAG
CTTCTCGACTTCCGTGTGGGAAGTTTGGTTTGTTCTTGTAGCCCAGACCA
ACCGTTCCATCACAGCAGCTTCATTTTTAGCTGGCCGTAGTTCTTAACCG
AGAAGATCGGCTTGCCGTTCTGGTTTTGTTAATCTCGAGCGGTTTTTCGA
GTTCCCCTGTTGTTTGTCCTTACGGTTGGATTGTGTGGAAGGTCTCGGGC
GTTTGTTTACCTTCTGTCGACAACACTTGTATTTGCCGAGTCGATGTGCG
CTCATACCCTCCAAGGTTTGAAAGCATGCATGGCGGGCCTTCCTGTGTTT
ATCCGTCGCGTCTGATTTTGTGTTGTCATCGTGTGGTCTTCCTCTTCCCC
TCCGGTGGGCCCGTCTTCTTCCCCTGGTCGTGTTTTTCTCGCTTTTTTTT
CTTGTTCGTGTGTGTTTGGTTGCTTTGTCGGGGTGTTCGGGGGCTGCAGC
GTGGCAGAGTTCTCCAACAGGGACGACATGGCGAGGGCTGTTCGCGAGTT
GGATGACACCTACTTCGCCGAGAGACGCATCCGTGTGGATTACGTAAGTA
CCGAGATTTCGACGTAGCGATGGTCACGTACACGTTGAAACATGGGCAAA
CCACCGTTAATTTTTTGTGGCAAGTTACTATCAGAGGTGCTTACGGGATG
ATGAGATGTATGAAGTCTCGGTGAATCCGTCACTTCGCCTCACGACTCTT
ATTTTTTTTCCATTACAGGATGATGGAGGAAGTGGCGGCAGGGGACGCTC
CCGTTCTCCAAGGCGCCGTTCCCGTACCCCGCCCCCGCGCCGCAGCCCTC
CTCGGGGGCGCTCTCGCTCTCCTGTGGGGCGCGGACGGTCGCCATACGGT
GGCCGCAGCCGTAGCCGCAGTCCTGGTCGTGACAGGTATGGCAGCTGGCA
CACTGGCCACAGTAGGCAGTTGTCTGGACAATAAATTACTGGACACGGCC
TGTGGTAGGTGCATGGGCAATGGCTTCGGTTATACCCGTTTGCAGGGTCT
TGAGTAAGCTGTCCTGAGCTCATGGCGTGGCGTTTTGAGCTGATTCGAGC
GACATGGGAAGTATGAGAGGGTGATCGGTGTGACAAACAAGAGAGCGTAT
TTTCTTCAAGTTGGACTGGTCGATTTTCACGAGTTTTTTTTTCCATTATA
TTGCGCGGATTTGGCACGTAAAATGCAAGCGCCGAAATTTCCGCTTGCTT
GCCTGTCGCTCCGTCGGCGCCAAGCAGCTGAGCTGGCGTCATGTTTCTCT
TGTTGCTCACCTATCCTCAGGTACTGAACGGACCATGGAAACGCACGCAG
AGGTGCGTCGTGTGCAGTGAGGCCCGTGATGCTTCGAGCGTGATCGATGC
CTCGAAATCGCCATCTATTGATTCTGGTGGTACCAGAGTTCTGGGTTCGT
CCGCGCGTGCGATGGCGGTGGCCAGGTGGAAATGCAATGAGGCATCCGTA
ACTTTCGGCAGATGCCGAATATACCGCTTCGACCCCGTTATACCGTTGCG
TTGTTTTTAGGTTAGGGGTAGGGGGGCCTTTTTTGAAAACTGACTGATCA
CTCTGTTATAACGCGTTCACGTCATGATGCCGAGTAGAGCCCTTTCTGCT
TTTTGAATTTGTAAGAACGGTTTCATTCAAACATAATCTTTTTTTTTTGC
ATTTGCTTTGTTGCCCCACTCGGTGAACAGTTGAGCGTGGGTCAGGGGGG
GAGTGTCGGAGGGGCAAAATTGAAAAAGGAGAAAGTGTCGTCACCCTGAA
ATTTCAGTTGTGCACTGACCGCGTCTCCTGGCGTGGAGGTCAAATTCCAT
CTCTTGCTCATCTTGTATACCTGGTGATTGTGTCTTGTCAGTGTTTTTGT
AATTTGAGTAGTCGGGGGTTACTTCGGTGTGTGGTGGCAGTTACAATTGA
CCCTATAGATGACACAATAATGCCTCCTAAAGCGTGATGTGTGTAGCAAA
TTCATGCACGAGGCAATTTTTCCGGGCGACGAAAACGTTTGAACCAAACG
GTTTAGCGTCTGCCCGTACCTTCGTTTGGGATCGAGTGGATACTCAGTCT
GATATAACGGGGATGCGCGTGCCATACCGGATTTACGAATTACTTTCACG
AGATAGTGCTTGCTGTTGTCTTTCGTTTGCAGAATTTTATTTGCAACTGG
TCCGGTTGGGACACGCTGTGGAGGAGGGCATTTGTCAAACAAGATATTTC
CATGTGCAATCTTAATGCGATGGAAAATATGGAATGTGATGTTTATCCAT
GGTTCCGCATCTAGTCGACCTATGTGCGAGTAAGAATGTGAATATGCAAA
CATGTGTCAGTAAGCGCCATCCTTTTCTCTTGTTCAGTATGCCCCGAAAG
GATGCATATTTGTTCGATACGTGTGGGGGAAAAGGAGGTAGAGGGGCAAC
ACGGTAGAGACATGAACGGTCAAACCACGACAGGGGTAACCTGCTTACCT
CGAAGATCTAGCTAGGAATAAAAAAGTATCATGCATCGTATATGAAGTTG
GATATTAATCAAATGAATATGTGCCATTTTATGTTATGTACATCCTAACA
CTAGTAGAAGAAAAAAATAGTACAAAGCATATTGGACAACGATGAGTAGG
GAAAAATCTCACGTGCAATGGTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4829:2272..7997-

>mRNA_H-paniculata_contig4829.11932.1 ID=mRNA_H-paniculata_contig4829.11932.1|Name=mRNA_H-paniculata_contig4829.11932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1680bp|location=Sequence derived from alignment at H-paniculata_contig4829:2272..7997- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGACGTTCCAGGGACGAAGGTGTGGGTGGGGAACCTGGGAAGTAC
TTGCGAGGAGCGAGACCTCCGGGATGAGTTCAGCAAATTTGGGGAACTCA
ACAAGGCGAGTATGGGTGACGTTCCAGGGACGAAGGTGTGGGTGGGGAAC
CTGGGAAGTACTTGCGAGGAGCGAGACCTCCGGGATGAGTTCAGCAAATT
TGGGGAACTCAACAAGGCGAGTGTCTGGGTCGCTCGTAACCCTCCCGGGT
TTGCGTTTGTCTGGTTCTCCGATGACCGGGATGCTACTGATGCTGTGCGT
GAGGTGGACGGCCGGAGCATCAACGGACGGGAGTGGCGTGTCGAGATCGT
CTGGGTCGCTCGTAACCCTCCCGGGTTTGCGTTTGTCTGGTTCTCCGATG
ACCGGGATGCTACTGATGCTGTGCGTGAGGTGGACGGCCGGAGCATCAAC
GGACGGGAGTGGCGTGTCGAGATCTCTCACCAGAGAGGTCGTGACCGCGG
GCCGCCCGGGGGCGGGGGCGGGGGAGGGGGCTACGGTGGTGGCGGGGGGG
GGTATGGAGGAGGAGGCGGTGGAGGCTACGGAGGCGGGGGGGGCTACGGT
GGCGGAGGCGGTGGCTATGGCGCCCCGCGGACCGGTGGTGCCGCACCCCG
GACGGGGTACAAGGTCCGCATCACCGGTTTGCCCGAGGGTATGCGCTGGT
CGGAATTGAAGGACTTCGTGCGCAAGGCGGGGGATGTGACTTATGCCGAC
GTACGCGGTGACGAGGGTCTCACCAGAGAGGTCGTGACCGCGGGCCGCCC
GGGGGCGGGGGCGGGGGAGGGGGCTACGGTGGTGGCGGGGGGGGGTATGG
AGGAGGAGGCGGTGGAGGCTACGGAGGCGGGGGGGGCTACGGTGGCGGAG
GCGGTGGCTATGGCGCCCCGCGGACCGGTGGTGCCGCACCCCGGACGGGG
TACAAGGTCCGCATCACCGGTTTGCCCGAGGGTATGCGCTGGTCGGAATT
GAAGGACTTCGTGCGCAAGGCGGGGGATGTGACTTATGCCGACGTACGCG
GTGACGAGGGCGTGGCAGAGTTCTCCAACAGGGACGACATGGCGAGGGCT
GTTCGCGAGTTGGATGACACCTACTTCGCCGAGAGACGCATCCGTGTGGA
TTACCGTGGCAGAGTTCTCCAACAGGGACGACATGGCGAGGGCTGTTCGC
GAGTTGGATGACACCTACTTCGCCGAGAGACGCATCCGTGTGGATTACGA
TGATGGAGGAAGTGGCGGCAGGGGACGCTCCCGTTCTCCAAGGCGCCGTT
CCCGTACCCCGCCCCCGCGCCGCAGCCCTCCTCGGGGGCGCTCTCGCTCT
CCTGTGGGGCGCGGACGGTCGCCATACGGTGGCCGCAGCCGTAGCCGCAG
TCCTGGTCGTGACAGGTATGGCAGCTGGCACACTGGCCACAGTAGGCAGT
TGTCTGGACAATAAGATGATGGAGGAAGTGGCGGCAGGGGACGCTCCCGT
TCTCCAAGGCGCCGTTCCCGTACCCCGCCCCCGCGCCGCAGCCCTCCTCG
GGGGCGCTCTCGCTCTCCTGTGGGGCGCGGACGGTCGCCATACGGTGGCC
GCAGCCGTAGCCGCAGTCCTGGTCGTGACAGGTATGGCAGCTGGCACACT
GGCCACAGTAGGCAGTTGTCTGGACAATAA
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