prot_H-paniculata_contig4829.11932.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig4829.11932.1
Unique Name	prot_H-paniculata_contig4829.11932.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	280

Homology

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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: D7G5E4_ECTSI (Similar to arginine/serine-rich splicing factor 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E4_ECTSI)

HSP 1 Score: 307 bits (787), Expect = 2.700e-102
Identity = 204/265 (76.98%), Postives = 211/265 (79.62%), Query Frame = 0

Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGGSGGRGRSRSPRRXXXTPPPRRSPPXXXXXXXXXXXXXXYGGRSRSRSPGRDRY 265
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNK  VWVARNPPGFAFVWF+DDRDA DAVRE+DG+SI GREWRVE+SHQRGRDRGPPG XXXXX              XXXXXXXXXXXXXXX              YKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDM+RAVRELDDTYFA+RRIRVDYDDGGSG          XX +PPPRR   XXXXXXXXXXXXXX      SRSP RDRY
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNK--VWVARNPPGFAFVWFADDRDAGDAVREIDGKSIAGREWRVEVSHQRGRDRGPPGGXXXXX--------------XXXXXXXXXXXXXXXYGAPRVGGAAPRTGYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMSRAVRELDDTYFADRRIRVDYDDGGSGXXXXXXPAXXXXRSPPPRRGSXXXXXXXXXXXXXXXXXXXXXSRSPIRDRY 249

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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: A0A6H5L109_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L109_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 1.890e-68
Identity = 151/219 (68.95%), Postives = 152/219 (69.41%), Query Frame = 0

Query:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEI------------------------------------------SHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 177
            MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNK  VWVARNPPGFAFVWF+DDRDATDAVREVDGRSI GREWRVEI                                          SHQRGRDRGPPG      GYG  XXXXXXXXXXXXXXXXXXXXXXXX              YKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG
Sbjct:    1 MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNK--VWVARNPPGFAFVWFADDRDATDAVREVDGRSIAGREWRVEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHQRGRDRGPPGG-----GYGGGXXXXXXXXXXXXXXXXXXXXXXXX--------------YKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEG 198

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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: A0A835Z7K1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K1_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.580e-47
Identity = 112/237 (47.26%), Postives = 136/237 (57.38%), Query Frame = 0

Query:    1 MGD--VPGTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGGSGGRGRSRSP--RRXXXTPPPRR 233
            MGD    GTKV++GN+     E +LRDEF+++G L +  VW+ARNPPGFAFVWFSD RDA DAVR +DG  +NG+  RVEISH R   R    XX    GYG       XXXXX                            +KVRI+ LP    W+ELKDF+RK GD+ YA+    EGVAEF++RD M RA REL DT F +RRI ++ +D     R  SRSP  RR     PPRR
Sbjct:    1 MGDREESGTKVFIGNVEG-ISEGELRDEFARYGRLTQ--VWIARNPPGFAFVWFSDIRDAEDAVRGLDGSQLNGKPIRVEISHNRRGRRXXXXXXGRGGGYGDRDRGYDXXXXXSSRPPPRAGGAPRKTG------------FKVRISNLPANAHWTELKDFMRKVGDIIYANAENGEGVAEFADRDGMERAYRELHDTTFGDRRIVIEMNDESDRYRRDSRSPPPRRGRSRTPPRR 222

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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: A0A5D6YQ52_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YQ52_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.870e-33
Identity = 91/221 (41.18%), Postives = 121/221 (54.75%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGGSGGRG---RSRSP 222
            GT+V+VG L      R+++D FS++G ++  ++WVARNPPGFAFV F D RDA DA+R +DGR   G   RVEI+  RG  R   G       +GXXXXXXXX                                ++VRIT LP G  W  +KDF+R  G+VTY D+  D   VAEF +++DM  A+++LDDT F    +R+  + GG G      RSRSP
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFSRYGHVS--NIWVARNPPGFAFVDFEDPRDAEDAIRALDGRDFLGGRIRVEIA--RGGSRRDDGGRGRGGDFGXXXXXXXXRDRGFDRGAGRNPPQRTD--------------FRVRITDLPRGTDWRNIKDFLRTGGEVTYCDIENDGTAVAEFQSKEDMDNAIKKLDDTEFRGNYVRLIPESGGGGNDSSSRRSRSP 204

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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: A0A7S3PMS3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMS3_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.310e-31
Identity = 109/206 (52.91%), Postives = 136/206 (66.02%), Query Frame = 0

Query:    7 TKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGG 212
            +K++VGN+     E +L D+F K+G+++  SVW+ARNPPGFAFV F D RDA DA+++++ R   GR  RVE+S +R          XXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXX            ++V ITGLP    W +LKDF+R+ G+V YADVR  EGVA+F   DDM RAVR+LD T F    I +  D GG
Sbjct:    2 SKLYVGNIPDDTREGELEDKFKKYGKIS--SVWLARNPPGFAFVTFDDPRDAEDAMKDMNDREFLGRRIRVELSKER---------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHGRHRDYRQGEFRVIITGLPSRCSWQDLKDFLRRGGEVCYADVRDGEGVADFLTADDMDRAVRKLDGTDFDGGPITIKEDRGG 196

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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: A0A6G0XSF8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XSF8_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.440e-31
Identity = 75/217 (34.56%), Postives = 113/217 (52.07%), Query Frame = 0

Query:    8 KVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGGSGGRGRSRSPRR 224
            +V+VG +  +   R++ + F +FG++   +VW+ARNPPGFAFV F D RDA DA++++DG+ + G   RV+++   G  RG  G        G                                        +KVRITGLP    W ++KDFVRKAGDV++ D+ GD+ + E +++ D+   +R+LDDT F  RR+ +         R RS+SPRR
Sbjct:    5 RVYVGGIPKSAGNREIEEAFQRFGKI--VNVWIARNPPGFAFVDFEDPRDADDAIKDMDGKELLGERIRVQMARG-GVRRGGRGDRDRSYRDGSSDRHRSSG-------------------------------HKVRITGLPRNADWRDVKDFVRKAGDVSFCDMDGDDAIVELASKFDLENVIRKLDDTEFDGRRVSI------KAVRDRSQSPRR 181

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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: G4YPP5_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YPP5_PHYSP)

HSP 1 Score: 122 bits (307), Expect = 6.350e-31
Identity = 74/196 (37.76%), Postives = 103/196 (52.55%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGR-DRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMARAVRELDDTYF 199
            GT+V+VG L      R+++D F+++G ++  ++WVARNPPGFAFV F D RDA DA+R +DGR   G   RVE++    R D G   XXX   GYG                                        Y+VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF  +DDM  A+++LDDT F
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFNRYGHVS--NIWVARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELARGGSRRDGGGRXXXXDRGGYGGRGGDRFDRGRNPPQRTD----------------------YRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQTKDDMEDAIKKLDDTEF 173

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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: A0A8K1CTI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTI4_PYTOL)

HSP 1 Score: 122 bits (306), Expect = 4.310e-30
Identity = 86/221 (38.91%), Postives = 117/221 (52.94%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGR-DRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGGSGGRGRSRSPRR 224
            GT+V++G L      R+++D FS++G +  A++W+ARNPPGFAFV F D RDA DA+R +DGR   G   RVE++    R DR    XXXXXX  G                                        ++VRIT LP G+ W ++KD +R AG+VT+ +V  D   +AEF +RDD+  A+ +LDD  F    IR+      S  R RSRSPRR
Sbjct:    2 GTRVYIGGLPRDATSREVQDGFSRYGHI--ANIWIARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELAKGGSRRDRXXXXXXXXXXRGGDRFERGGRNPPQRTE-------------------------FRVRITDLPRGVDWRDVKDHLRTAGEVTFCNVENDGTAIAEFQSRDDVQNAIEKLDDKEFRGSYIRITA--ASSEERSRSRSPRR 193

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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: H3GHB6_PHYRM (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3GHB6_PHYRM)

HSP 1 Score: 122 bits (306), Expect = 7.040e-30
Identity = 96/218 (44.04%), Postives = 130/218 (59.63%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMARAVRELDDTYFAERRIRVDYDDGGSGGRGRSRSP 222
            GT+V+VG L      R+++D F+++G ++  ++WVARNPPGFAFV F D RDA DA+R +DGR   G   RVE++  RG  R             XXXXXXXXXXXXXX    XXXXXXX               ++VR+T LP  + W  +KDF+R  G+VTY ++  D   +AEF ++ D+  A+++LDDT F    +RV  + G S  R RSRSP
Sbjct:    2 GTRVYVGGLPRDATSREIQDGFNRYGHVS--NIWVARNPPGFAFVDFEDPRDADDAIRSMDGRDFLGGRIRVELA--RGGSR--------RDXXXXXXXXXXXXXXXXXDDDRXXXXXXXRDRFERGRNPPQRTDFRVRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGSAIAEFQSKQDLDDAIKKLDDTEFRGSYVRVAAEGGDSARRSRSRSP 207

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BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Match: A0A2D4BLB0_PYTIN (Serine/arginine-rich splicing factor 1-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLB0_PYTIN)

HSP 1 Score: 120 bits (300), Expect = 3.060e-29
Identity = 79/205 (38.54%), Postives = 111/205 (54.15%), Query Frame = 0

Query:    6 GTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFVWFSDDRDATDAVREVDGRSINGREWRVEISHQRG---RDRGPPGXXXXXXGYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYKVRITGLPEGMRWSELKDFVRKAGDVTYADVRGD-EGVAEFSNRDDMARAVRELDDTYFAERRIRV 206
            GT+V+VG L     +R+++D F ++G ++  +VW+ARNPPGFAFV F D RDA DA+R +DGR   G   R+ +   RG   RDRG  G  XXXX                           XXX             ++VRIT LP G+ W ++KD +R AG+VT+ +V GD   +AEF  ++DM  A+++LDD  F    IR+
Sbjct:    2 GTRVYVGGLPRDATQREIQDGFGRYGHIS--NVWIARNPPGFAFVDFEDPRDADDAIRSMDGRDFLG--GRIRVEQARGGTRRDRGDRGDFXXXX---------------------------XXXRNERGRNPPQRTDFRVRITDLPRGVDWRDVKDHLRTAGEVTFCNVEGDGTAIAEFQTQEDMDNAIQKLDDKDFRGSYIRI 175

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig4829.11932.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G5E4_ECTSI	2.700e-102	76.98	Similar to arginine/serine-rich splicing factor 7 ...	[more]
A0A6H5L109_9PHAE	1.890e-68	68.95	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835Z7K1_9STRA	1.580e-47	47.26	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A5D6YQ52_9STRA	1.870e-33	41.18	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A7S3PMS3_9STRA	1.310e-31	52.91	Hypothetical protein n=1 Tax=Aplanochytrium stocch...	[more]
A0A6G0XSF8_9STRA	1.440e-31	34.56	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
G4YPP5_PHYSP	6.350e-31	37.76	Uncharacterized protein (Fragment) n=1 Tax=Phytoph...	[more]
A0A8K1CTI4_PYTOL	4.310e-30	38.91	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
H3GHB6_PHYRM	7.040e-30	44.04	Uncharacterized protein n=3 Tax=Peronosporaceae Ta...	[more]
A0A2D4BLB0_PYTIN	3.060e-29	38.54	Serine/arginine-rich splicing factor 1-like protei...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 142..207 e-value: 7.5E-11 score: 52.1 coord: 8..78 e-value: 5.9E-17 score: 72.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 143..205 e-value: 1.7E-8 score: 34.1 coord: 9..76 e-value: 4.2E-16 score: 58.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..82 score: 16.176
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 141..211 score: 10.991
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..129 e-value: 1.4E-22 score: 82.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 140..209 e-value: 2.3E-16 score: 61.4
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 7..266
None	No IPR available	PANTHER	PTHR23003:SF27	NUCLEOLAR PROTEIN 3	coord: 7..266
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..209

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig4829	contig	H-paniculata_contig4829:3964..7997 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig4829.11932.1	mRNA_H-paniculata_contig4829.11932.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig4829 2272..7997 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig4829.11932.1 ID=prot_H-paniculata_contig4829.11932.1|Name=mRNA_H-paniculata_contig4829.11932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=280bp
MGDVPGTKVWVGNLGSTCEERDLRDEFSKFGELNKASVWVARNPPGFAFV
WFSDDRDATDAVREVDGRSINGREWRVEISHQRGRDRGPPGGGGGGGGYG
GGGGGYGGGGGGGYGGGGGYGGGGGGYGAPRTGGAAPRTGYKVRITGLPE
GMRWSELKDFVRKAGDVTYADVRGDEGVAEFSNRDDMARAVRELDDTYFA
ERRIRVDYDDGGSGGRGRSRSPRRRSRTPPPRRSPPRGRSRSPVGRGRSP
YGGRSRSRSPGRDRYGSWHTGHSRQLSGQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf