mRNA_H-paniculata_contig48283.11931.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48283.11931.1
Unique NamemRNA_H-paniculata_contig48283.11931.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig48283.11931.1 vs. uniprot
Match: A0A6H5KSM6_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.740e-17
Identity = 56/164 (34.15%), Postives = 87/164 (53.05%), Query Frame = 1
Query:    1 WICDNGATKHMTHDSDFLFNHQECDGHVRLSDGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRC-SREELKINLKTGRVLSAERFGSLDVMRGSRVCPEDSALATIAPSRLPIHS----ATHMDINVFHCSFGHANEFLLR 477
            ++ D GAT HM  ++D   ++++CD  VR++ G    I G G + +          + L +VA +P L ++L+SL    D G E +  ++ EL++    G V+   R G+L V  G R   E  A A IAP      S    +T +DIN FHC++GH++E LLR
Sbjct:  381 YVADTGATTHMFANTDGFVHYEDCDRRVRVAAGETFSIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHTEH-ACAAIAPGNAKAPSXKASSTPVDINDFHCAYGHSHEVLLR 543          
BLAST of mRNA_H-paniculata_contig48283.11931.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 61.2 bits (147), Expect = 5.590e-8
Identity = 46/162 (28.40%), Postives = 78/162 (48.15%), Query Frame = 1
Query:    1 WICDNGATKHMTHDSDFLFNHQEC-DGHVRLSDGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREELKINLKTG-RVLSAERFGSLDVMRGSRVCPEDSALATIAPSRLPIHSATHMDINVFHCSFGHANEFLLRE 480
            WI D+GA++HMTH S+++ N Q   D HV L DG +  + G G +++Q   D + +   L  V ++P L+ +L S+G   +  +    +   +K+ L    +   A+R  +L  M   +V  E+ A  T           T  +I  +H   GH N   +R+
Sbjct:  288 WILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVGACMNKNYRVVFTNNSVKLFLNNALKASGAKRNNNLFHMF-FKVRSENEACVT-----------TTTNIKNWHNRLGHVNYKYIRQ 437          
BLAST of mRNA_H-paniculata_contig48283.11931.1 vs. uniprot
Match: A0A4D8ZGL2_SALSN (Cis-zeatin O-glucosyltransferase n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZGL2_SALSN)

HSP 1 Score: 56.6 bits (135), Expect = 2.300e-6
Identity = 43/156 (27.56%), Postives = 80/156 (51.28%), Query Frame = 1
Query:    1 WICDNGATKHMTHDSDFLFNHQECDG-HVRLSDGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREELKINLKTGRVLSAERFGSLDVMRGSRVCPEDSALATIAPSRLPIHSATHMDINVFHCSFGHANE 465
            WI D+GA+ H+    ++   +++ DG +V +++ +   + G+G + ++     + V   L  V  +P ++ +L+SL  F   G  ++     ++I   +  VL+A ++G+L V+RGS V   DSA   IA S +    AT     ++H   GH  E
Sbjct:  122 WILDSGASYHLFPHMEYFTTYEQIDGGNVTMANSDVCKVVGIGSIRIRTH---DGVFCTLNDVRHVPQMTKNLISLNTFDSKGFSFKGESGVMRILKGSKMVLTALKWGTLYVLRGSIVA--DSA--DIASSEV----ATKDMNTLWHMRLGHMGE 266          
BLAST of mRNA_H-paniculata_contig48283.11931.1 vs. uniprot
Match: A0A2P6PN01_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PN01_ROSCH)

HSP 1 Score: 54.7 bits (130), Expect = 1.120e-5
Identity = 44/166 (26.51%), Postives = 75/166 (45.18%), Query Frame = 1
Query:    1 WICDNGATKHMT-HDSDFLFNHQECDGHVRLSDGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREELKINLKTGRVLSAERFGSLDVMRGSRVCPEDSALATIAPSRL-PIH----------SATHMDINVFHCSFGHAN 462
            W  D G + HM+ H   F+  ++     +   + +R+P++G G + +Q +     +   ++ V ++P LSH+LLS+GK ++ G++ R  R    I     R L AE                     T+AP+RL P+H          S  + D  ++H  FGH N
Sbjct:  287 WYLDTGCSNHMSGHKELFVELNESIRSEITFGNASRMPVKGKGKISIQLK---NGMYNTISDVYYVPGLSHNLLSVGKLSEKGYDMRIFRGVFTIR-DPQRKLIAE--------------------VTMAPNRLFPLHMQYDKLPCFSSMENGDNWLWHMRFGHLN 428          
BLAST of mRNA_H-paniculata_contig48283.11931.1 vs. uniprot
Match: Q9SJT2_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SJT2_ARATH)

HSP 1 Score: 52.8 bits (125), Expect = 5.320e-5
Identity = 32/123 (26.02%), Postives = 63/123 (51.22%), Query Frame = 1
Query:    1 WICDNGATKHMTHDSDFLFN-HQECDGHVRLSDGNRLPIEGVGMLFLQFRFDSEV-VLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREELKINLKTGRVLSAERFGSLDVMRGSRVCPE 363
            W+ D G + HMT+  ++  + +++  G VR+ +     + G+G +    R  +E  ++++LT V +IP +  +LLSLG F   G+ ++     L I      +L+  R  +L +++   V  E
Sbjct:  287 WVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTI----RVKNEAGMVVRLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCYTLYLLQWRPVTEE 405          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48283.11931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KSM6_9PHAE1.740e-1734.15CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A151ITN2_9HYME5.590e-828.40Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
A0A4D8ZGL2_SALSN2.300e-627.56Cis-zeatin O-glucosyltransferase n=1 Tax=Salvia sp... [more]
A0A2P6PN01_ROSCH1.120e-526.51Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
Q9SJT2_ARATH5.320e-526.02Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48283contigH-paniculata_contig48283:6..485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size450
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930430.2015986-CDS-H-paniculata_contig48283:5..4551622930430.2015986-CDS-H-paniculata_contig48283:5..455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48283 6..455 -
1691481288.6565757-CDS-H-paniculata_contig48283:5..4551691481288.6565757-CDS-H-paniculata_contig48283:5..455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48283 6..455 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930430.2160323-UTR-H-paniculata_contig48283:455..4851622930430.2160323-UTR-H-paniculata_contig48283:455..485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48283 456..485 -
1691481288.6673794-UTR-H-paniculata_contig48283:455..4851691481288.6673794-UTR-H-paniculata_contig48283:455..485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48283 456..485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48283.11931.1prot_H-paniculata_contig48283.11931.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48283 6..455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48283.11931.1

>prot_H-paniculata_contig48283.11931.1 ID=prot_H-paniculata_contig48283.11931.1|Name=mRNA_H-paniculata_contig48283.11931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MTHDSDFLFNHQECDGHVRLSDGNRLPIEGVGMLFLQFRFDSEVVLMKLT
QVAFIPLLSHHLLSLGKFADFGHEYRCSREELKINLKTGRVLSAERFGSL
DVMRGSRVCPEDSALATIAPSRLPIHSATHMDINVFHCSFGHANEFLLRE
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mRNA from alignment at H-paniculata_contig48283:6..485-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48283.11931.1 ID=mRNA_H-paniculata_contig48283.11931.1|Name=mRNA_H-paniculata_contig48283.11931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=480bp|location=Sequence derived from alignment at H-paniculata_contig48283:6..485- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATTTGTGATAATGGTGCAACGAAACACATGACCCATGATTCAGATTT CCTTTTTAATCACCAGGAATGTGATGGGCATGTACGCCTTTCAGATGGTA ATCGTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTT GACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCGTTCATTCCACT TCTCAGTCATCACCTTCTATCTCTAGGGAAATTCGCGGACTTTGGTCATG AATATAGGTGTTCGCGCGAAGAGCTCAAAATTAACCTTAAAACAGGGAGA GTTCTGAGTGCTGAGCGATTTGGTAGCCTTGACGTGATGCGAGGGTCGCG AGTTTGTCCCGAAGATAGTGCGCTTGCAACGATAGCCCCGTCTCGCCTGC CGATACATTCCGCTACCCACATGGACATCAATGTTTTCCACTGCTCCTTT GGTCATGCGAACGAGTTTCTGCTTCGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig48283:6..485-

>mRNA_H-paniculata_contig48283.11931.1 ID=mRNA_H-paniculata_contig48283.11931.1|Name=mRNA_H-paniculata_contig48283.11931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig48283:6..485- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCCATGATTCAGATTTCCTTTTTAATCACCAGGAATGTGATGGGCA
TGTACGCCTTTCAGATGGTAATCGTCTCCCGATCGAAGGAGTTGGCATGC
TGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTTTTGATGAAGTTAACT
CAGGTTGCGTTCATTCCACTTCTCAGTCATCACCTTCTATCTCTAGGGAA
ATTCGCGGACTTTGGTCATGAATATAGGTGTTCGCGCGAAGAGCTCAAAA
TTAACCTTAAAACAGGGAGAGTTCTGAGTGCTGAGCGATTTGGTAGCCTT
GACGTGATGCGAGGGTCGCGAGTTTGTCCCGAAGATAGTGCGCTTGCAAC
GATAGCCCCGTCTCGCCTGCCGATACATTCCGCTACCCACATGGACATCA
ATGTTTTCCACTGCTCCTTTGGTCATGCGAACGAGTTTCTGCTTCGGGAG
ATGACCCATGATTCAGATTTCCTTTTTAATCACCAGGAATGTGATGGGCA
TGTACGCCTTTCAGATGGTAATCGTCTCCCGATCGAAGGAGTTGGCATGC
TGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTTTTGATGAAGTTAACT
CAGGTTGCGTTCATTCCACTTCTCAGTCATCACCTTCTATCTCTAGGGAA
ATTCGCGGACTTTGGTCATGAATATAGGTGTTCGCGCGAAGAGCTCAAAA
TTAACCTTAAAACAGGGAGAGTTCTGAGTGCTGAGCGATTTGGTAGCCTT
GACGTGATGCGAGGGTCGCGAGTTTGTCCCGAAGATAGTGCGCTTGCAAC
GATAGCCCCGTCTCGCCTGCCGATACATTCCGCTACCCACATGGACATCA
ATGTTTTCCACTGCTCCTTTGGTCATGCGAACGAGTTTCTGCTTCGGGAG
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