prot_H-paniculata_contig48283.11931.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig48283.11931.1
Unique Nameprot_H-paniculata_contig48283.11931.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length150
Homology
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BLAST of mRNA_H-paniculata_contig48283.11931.1 vs. uniprot
Match: A0A6H5KSM6_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM6_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 8.710e-13
Identity = 50/150 (33.33%), Postives = 78/150 (52.00%), Query Frame = 0 
Query:    5 SDFLFNHQECDGHVRLSDGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRC-SREELKINLKTGRVLSAERFGSLDVMRGSRVCPEDSALATIAPSRLPIHS----ATHMDINVFHCSFGHANEFLLR 149
            +D   ++++CD  VR++ G    I G G + +          + L +VA +P L ++L+SL    D G E +  ++ EL++    G V+   R G+L V  G R   E  A A IAP      S    +T +DIN FHC++GH++E LLR
Sbjct:  395 TDGFVHYEDCDRRVRVAAGETFSIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHTEH-ACAAIAPGNAKAPSXKASSTPVDINDFHCAYGHSHEVLLR 543
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48283.11931.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KSM6_9PHAE8.710e-1333.33CCHC-type domain-containing protein (Fragment) n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48283contigH-paniculata_contig48283:6..455 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48283.11931.1mRNA_H-paniculata_contig48283.11931.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig48283 6..485 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig48283.11931.1 ID=prot_H-paniculata_contig48283.11931.1|Name=mRNA_H-paniculata_contig48283.11931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MTHDSDFLFNHQECDGHVRLSDGNRLPIEGVGMLFLQFRFDSEVVLMKLT
QVAFIPLLSHHLLSLGKFADFGHEYRCSREELKINLKTGRVLSAERFGSL
DVMRGSRVCPEDSALATIAPSRLPIHSATHMDINVFHCSFGHANEFLLRE
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