mRNA_H-paniculata_contig48283.11931.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig48283.11931.1 vs. uniprot
Match: A0A6H5KSM6_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM6_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 1.740e-17 Identity = 56/164 (34.15%), Postives = 87/164 (53.05%), Query Frame = 1
Query: 1 WICDNGATKHMTHDSDFLFNHQECDGHVRLSDGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRC-SREELKINLKTGRVLSAERFGSLDVMRGSRVCPEDSALATIAPSRLPIHS----ATHMDINVFHCSFGHANEFLLR 477
++ D GAT HM ++D ++++CD VR++ G I G G + + + L +VA +P L ++L+SL D G E + ++ EL++ G V+ R G+L V G R E A A IAP S +T +DIN FHC++GH++E LLR
Sbjct: 381 YVADTGATTHMFANTDGFVHYEDCDRRVRVAAGETFSIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNKHELELERGGGEVVYFPRCGNLYVQNGFRTHTEH-ACAAIAPGNAKAPSXKASSTPVDINDFHCAYGHSHEVLLR 543
BLAST of mRNA_H-paniculata_contig48283.11931.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME) HSP 1 Score: 61.2 bits (147), Expect = 5.590e-8 Identity = 46/162 (28.40%), Postives = 78/162 (48.15%), Query Frame = 1
Query: 1 WICDNGATKHMTHDSDFLFNHQEC-DGHVRLSDGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREELKINLKTG-RVLSAERFGSLDVMRGSRVCPEDSALATIAPSRLPIHSATHMDINVFHCSFGHANEFLLRE 480
WI D+GA++HMTH S+++ N Q D HV L DG + + G G +++Q D + + L V ++P L+ +L S+G + + + +K+ L + A+R +L M +V E+ A T T +I +H GH N +R+
Sbjct: 288 WILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVGACMNKNYRVVFTNNSVKLFLNNALKASGAKRNNNLFHMF-FKVRSENEACVT-----------TTTNIKNWHNRLGHVNYKYIRQ 437
BLAST of mRNA_H-paniculata_contig48283.11931.1 vs. uniprot
Match: A0A4D8ZGL2_SALSN (Cis-zeatin O-glucosyltransferase n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZGL2_SALSN) HSP 1 Score: 56.6 bits (135), Expect = 2.300e-6 Identity = 43/156 (27.56%), Postives = 80/156 (51.28%), Query Frame = 1
Query: 1 WICDNGATKHMTHDSDFLFNHQECDG-HVRLSDGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREELKINLKTGRVLSAERFGSLDVMRGSRVCPEDSALATIAPSRLPIHSATHMDINVFHCSFGHANE 465
WI D+GA+ H+ ++ +++ DG +V +++ + + G+G + ++ + V L V +P ++ +L+SL F G ++ ++I + VL+A ++G+L V+RGS V DSA IA S + AT ++H GH E
Sbjct: 122 WILDSGASYHLFPHMEYFTTYEQIDGGNVTMANSDVCKVVGIGSIRIRTH---DGVFCTLNDVRHVPQMTKNLISLNTFDSKGFSFKGESGVMRILKGSKMVLTALKWGTLYVLRGSIVA--DSA--DIASSEV----ATKDMNTLWHMRLGHMGE 266
BLAST of mRNA_H-paniculata_contig48283.11931.1 vs. uniprot
Match: A0A2P6PN01_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PN01_ROSCH) HSP 1 Score: 54.7 bits (130), Expect = 1.120e-5 Identity = 44/166 (26.51%), Postives = 75/166 (45.18%), Query Frame = 1
Query: 1 WICDNGATKHMT-HDSDFLFNHQECDGHVRLSDGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREELKINLKTGRVLSAERFGSLDVMRGSRVCPEDSALATIAPSRL-PIH----------SATHMDINVFHCSFGHAN 462
W D G + HM+ H F+ ++ + + +R+P++G G + +Q + + ++ V ++P LSH+LLS+GK ++ G++ R R I R L AE T+AP+RL P+H S + D ++H FGH N
Sbjct: 287 WYLDTGCSNHMSGHKELFVELNESIRSEITFGNASRMPVKGKGKISIQLK---NGMYNTISDVYYVPGLSHNLLSVGKLSEKGYDMRIFRGVFTIR-DPQRKLIAE--------------------VTMAPNRLFPLHMQYDKLPCFSSMENGDNWLWHMRFGHLN 428
BLAST of mRNA_H-paniculata_contig48283.11931.1 vs. uniprot
Match: Q9SJT2_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SJT2_ARATH) HSP 1 Score: 52.8 bits (125), Expect = 5.320e-5 Identity = 32/123 (26.02%), Postives = 63/123 (51.22%), Query Frame = 1
Query: 1 WICDNGATKHMTHDSDFLFN-HQECDGHVRLSDGNRLPIEGVGMLFLQFRFDSEV-VLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREELKINLKTGRVLSAERFGSLDVMRGSRVCPE 363
W+ D G + HMT+ ++ + +++ G VR+ + + G+G + R +E ++++LT V +IP + +LLSLG F G+ ++ L I +L+ R +L +++ V E
Sbjct: 287 WVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTI----RVKNEAGMVVRLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCYTLYLLQWRPVTEE 405 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48283.11931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig48283.11931.1 >prot_H-paniculata_contig48283.11931.1 ID=prot_H-paniculata_contig48283.11931.1|Name=mRNA_H-paniculata_contig48283.11931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp MTHDSDFLFNHQECDGHVRLSDGNRLPIEGVGMLFLQFRFDSEVVLMKLTback to top mRNA from alignment at H-paniculata_contig48283:6..485- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig48283.11931.1 ID=mRNA_H-paniculata_contig48283.11931.1|Name=mRNA_H-paniculata_contig48283.11931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=480bp|location=Sequence derived from alignment at H-paniculata_contig48283:6..485- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig48283:6..485- >mRNA_H-paniculata_contig48283.11931.1 ID=mRNA_H-paniculata_contig48283.11931.1|Name=mRNA_H-paniculata_contig48283.11931.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig48283:6..485- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |