prot_H-paniculata_contig4820.11915.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4820.11915.1
Unique Nameprot_H-paniculata_contig4820.11915.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length111
Homology
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A6H5LHQ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHQ7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 8.310e-25
Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = 0
Query:    1 MTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYASQKISRADVRKS 111
            + GY R FVP +S +  P+TDLLRDK+ +SK+AR   +PWG  Q ++  A+  AL +HP+L  PDW   F LHT  SELA GA LT+ VE+ E  + YAS + +RA+ + S
Sbjct:  358 LAGYLRGFVPDFSTLTAPITDLLRDKAFSSKRARNRRVPWGAAQIEAFQAVIKALVTHPVLAAPDWHLPFTLHTDASELAAGAVLTQPVENREAPLGYASHRFTRAEEKLS 468          
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.770e-21
Identity = 48/108 (44.44%), Postives = 70/108 (64.81%), Query Frame = 0
Query:    1 MTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERF--VVYASQKISRA 106
            + GY R FVP +S I  P++++LR+ + +SK+AR   +PWG EQ +  L +   LT+H IL+ PDW + F +H   S LATGA LT+EV+   R   V Y S+++SRA
Sbjct:  959 LAGYLRGFVPNFSAIRAPVSNILRNPAFSSKKARLKKVPWGSEQTEDFLKIIELLTTHSILILPDWSQPFTVHADASNLATGAVLTQEVDGGARHRPVGYHSKRLSRA 1066          
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A6H5KHG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.470e-20
Identity = 45/111 (40.54%), Postives = 71/111 (63.96%), Query Frame = 0
Query:    1 MTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYASQKISRADVRKS 111
            M  + R FV  +S I  PLTD+LR+K  ++K+AR + IPWG EQ+ +  A+  AL S P+L+ PDW+  F LHT  SE A GA LT+ VE  +  + + S + ++++ +++
Sbjct: 1052 MANFLRDFVKDFSAIVAPLTDILRNKDFSTKRARNLAIPWGEEQDAAHDAIIRALVSPPVLLPPDWELPFTLHTDASERAAGAVLTQVVEDHDTAIGFGSHRWTQSEAKRA 1162          
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A6H5KW13_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW13_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.550e-20
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 0
Query:    1 MTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVE 90
            + G  R FVP +S I  P+++LLR+ + +SK+AR   +PWG EQ ++ L +   LT+HP+L+ PDW + F +HT  S LATGA LT+EV+
Sbjct: 1926 LAGSLRGFVPNFSAITAPVSNLLRNPAFSSKKARLKKVPWGSEQAEAFLKIIELLTTHPVLILPDWSQPFTVHTDASTLATGAVLTQEVD 2015          
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A6H5JF70_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF70_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 7.850e-20
Identity = 47/111 (42.34%), Postives = 73/111 (65.77%), Query Frame = 0
Query:    1 MTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYASQKISRADVRKS 111
            +  Y R FVP +S IA PL+D+LR+K  +SK+AR   +  G  Q ++ + L   LT++P+LV P+W   F LHT  S +A G+ LT++VE+ E  V YAS+++SR++ + S
Sbjct:  326 LANYLRGFVPNFSAIAAPLSDILRNKEFSSKRARNKRVVMGPPQIEAYMKLVEKLTTYPVLVLPNWLEPFTLHTDASLIAAGSVLTQQVENREAPVGYASKRLSRSEEKLS 436          
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A146KRX9_LYGHE (RNA-directed DNA polymerase (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146KRX9_LYGHE)

HSP 1 Score: 86.3 bits (212), Expect = 2.200e-17
Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 0
Query:    1 MTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYASQKISRADVRKS 111
            + G+ R+FVP+++EIA P+T LL+         + V   WG +Q  S   LK AL S  IL+YPD +++F L T  S+ A GA L+++V+  ER V YAS+K++ A+ R S
Sbjct:  360 LAGFYRRFVPKFAEIAAPMTQLLK---------KGVDFDWGKDQAASFSHLKKALVSDAILIYPDLNKRFTLATDASQTALGAVLSQDVDGQERPVAYASRKLNPAETRYS 461          
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: UPI001CF3F5A1 (LOW QUALITY PROTEIN: uncharacterized protein LOC122946632 n=1 Tax=Bufo gargarizans TaxID=30331 RepID=UPI001CF3F5A1)

HSP 1 Score: 86.3 bits (212), Expect = 2.260e-17
Identity = 46/103 (44.66%), Postives = 65/103 (63.11%), Query Frame = 0
Query:    1 MTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYASQKI 103
            +TGY R+F+  Y++IA PL +LLR     + Q +   IPWG +QE++  ALK ALTS PIL Y D+D+ FIL T  S    GA L++  +  ER + YAS+ +
Sbjct:  287 LTGYYRRFIKDYAKIAGPLNELLRG---TAGQPKGQSIPWGQKQEEAFQALKEALTSAPILAYADFDKSFILATDGSLYGLGAVLSQVQDGHERVIAYASRSL 386          
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A6H5J659_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J659_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.030e-17
Identity = 40/79 (50.63%), Postives = 56/79 (70.89%), Query Frame = 0
Query:    1 MTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESEL 79
            +TGY RQFVP YS  A PLT++LR+K++ASK+ARK+ IPW + +E +  +L+  L S  +L +PD +R F LHT  S L
Sbjct:  433 LTGYLRQFVPNYSLTAAPLTNILRNKAVASKRARKLPIPWSVAEEDAFQSLRETLASPKVLAFPDLERPFELHTDASTL 511          
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A3B1IDL1_ASTMX (Ribonuclease H n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1IDL1_ASTMX)

HSP 1 Score: 84.0 bits (206), Expect = 1.440e-16
Identity = 41/109 (37.61%), Postives = 68/109 (62.39%), Query Frame = 0
Query:    1 MTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYASQKISRADVR 109
            + GY R+FVP +S IA+PLTD+       +K+ +   + W  + E++   LK ALTS P+L  PD+ + FI+HT  SE+  GA L++EV+  E  +++ S+K++  + R
Sbjct: 1004 LAGYYRRFVPNFSSIAVPLTDM-------TKKRQPEEVQWSTDAEKAFTQLKEALTSAPVLRNPDFSQPFIVHTDASEIGLGAVLSQEVDGMEHPILFLSKKLNPTERR 1105          
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A4Y2S932_ARAVE (Retrovirus-related Pol polyprotein from transposon 297 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2S932_ARAVE)

HSP 1 Score: 77.4 bits (189), Expect = 1.240e-15
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 0
Query:    1 MTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTK-EVESCERFVVYASQKISRAD 107
            + GY RQ++P +S IA PLTDLL+ +S      +K  + W  E   +   LK  LTS P+L  PD+ +KF+L T  SE   GA L++ + E  E  V+Y S+K S A+
Sbjct:   37 LAGYYRQYIPMFSIIAAPLTDLLKGRS------KKGEVTWSAECTAAFEKLKTLLTSEPVLYAPDFTKKFVLQTDASEFGMGAVLSQIDDEKNEHPVLYLSKKFSEAE 138          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LHQ7_9PHAE8.310e-2547.75Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K3V4_9PHAE3.770e-2144.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG6_9PHAE4.470e-2040.54Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KW13_9PHAE4.550e-2046.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JF70_9PHAE7.850e-2042.34Reverse transcriptase domain-containing protein n=... [more]
A0A146KRX9_LYGHE2.200e-1741.44RNA-directed DNA polymerase (Fragment) n=2 Tax=Lyg... [more]
UPI001CF3F5A12.260e-1744.66LOW QUALITY PROTEIN: uncharacterized protein LOC12... [more]
A0A6H5J659_9PHAE4.030e-1750.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3B1IDL1_ASTMX1.440e-1637.61Ribonuclease H n=1 Tax=Astyanax mexicanus TaxID=79... [more]
A0A4Y2S932_ARAVE1.240e-1540.74Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.370coord: 62..103
e-value: 1.3E-19
score: 72.7
NoneNo IPR availableGENE3D3.30.70.270coord: 3..61
e-value: 1.3E-19
score: 72.7
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 1..108
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 40..109
e-value: 5.0E-14
score: 52.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4820contigH-paniculata_contig4820:6314..6646 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4820.11915.1mRNA_H-paniculata_contig4820.11915.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4820 6044..6646 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4820.11915.1 ID=prot_H-paniculata_contig4820.11915.1|Name=mRNA_H-paniculata_contig4820.11915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLA
LKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYAS
QKISRADVRKS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041577RT_RNaseH_2