mRNA_H-paniculata_contig4820.11915.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A6H5LDH3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDH3_9PHAE) HSP 1 Score: 175 bits (444), Expect = 3.200e-47 Identity = 89/195 (45.64%), Postives = 126/195 (64.62%), Query Frame = 1
Query: 16 SWLDDILVPSTTFARHLKTLRVVLEYLLTAGLTVNFQKSNWCAPKDQLLGMVIGEAGVRPSAFKVEAII*LTLPRNVEQLRSVLGMTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYASQKISRADVRK 600
SWLDDIL+ S T+ +L L +VL LL AGL+VNF K + A + LGM+I G+ P+ K++AI + P VE+LR++LG+TGY RQFVP YS A PLT++LR K+ ASK+ARK+ IPW E + +L++ L S +L +PD +R F LHT S L GA+L + ++ R V +AS + S+ D R+
Sbjct: 453 SWLDDILIASDTWEEYLANLTLVLNRLLAAGLSVNFAKCIFGAAPQEFLGMIIDSTGLYPAPSKLDAIARMPRPHTVEELRTLLGLTGYLRQFVPNYSLTAAPLTNILRKKAFASKRARKLPIPWSAAGEDAFQSLRDTLASPRVLAFPDLERPFELHTDASTLGVGASLMQTIDGVTRAVAFASHRFSQTDARR 647
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A6H5LHQ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHQ7_9PHAE) HSP 1 Score: 173 bits (439), Expect = 1.650e-46 Identity = 85/195 (43.59%), Postives = 125/195 (64.10%), Query Frame = 1
Query: 19 WLDDILVPSTTFARHLKTLRVVLEYLLTAGLTVNFQKSNWCAPKDQLLGMVIGEAGVRPSAFKVEAII*LTLPRNVEQLRSVLGMTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYASQKISRADVRKS 603
WLDDIL+ S T H+ + V + L G +V+F+KS +C + + LG ++G +GVRP+ K+ A+ L +P V ++R+ LG+ GY R FVP +S + P+TDLLRDK+ +SK+AR +PWG Q ++ A+ AL +HP+L PDW F LHT SELA GA LT+ VE+ E + YAS + +RA+ + S
Sbjct: 274 WLDDILLHSATLEEHMALIEEVFDLLQGVGYSVHFKKSMFCMSEVEFLGAMVGRSGVRPAPSKIRAVQELEMPATVGEVRAFLGLAGYLRGFVPDFSTLTAPITDLLRDKAFSSKRARNRRVPWGAAQIEAFQAVIKALVTHPVLAAPDWHLPFTLHTDASELAAGAVLTQPVENREAPLGYASHRFTRAEEKLS 468
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE) HSP 1 Score: 170 bits (430), Expect = 2.940e-45 Identity = 85/194 (43.81%), Postives = 128/194 (65.98%), Query Frame = 1
Query: 13 KSWLDDILVPSTTFARHLKTLRVVLEYLLTAGLTVNFQKSNWCAPKDQLLGMVIGEAGVRPSAFKVEAII*LTLPRNVEQLRSVLGMTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERF--VVYASQKISRA 588
++WLDDI + S TF HL+ +R V++ L+ G T NFQKS + + + LG+++G GVRP+ K++A+ L +P NV ++RS LG+ GY R FVP +S I P++++LR+ + +SK+AR +PWG EQ + L + LT+H IL+ PDW + F +H S LATGA LT+EV+ R V Y S+++SRA
Sbjct: 873 ENWLDDIGLHSATFEEHLELVRRVVKILIARGYTGNFQKSEFFLSEIEFLGVMLGRDGVRPAPSKIKAVQELAIPTNVGEVRSFLGLAGYLRGFVPNFSAIRAPVSNILRNPAFSSKKARLKKVPWGSEQTEDFLKIIELLTTHSILILPDWSQPFTVHADASNLATGAVLTQEVDGGARHRPVGYHSKRLSRA 1066
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A6H5KHG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG6_9PHAE) HSP 1 Score: 164 bits (415), Expect = 2.950e-43 Identity = 82/195 (42.05%), Postives = 124/195 (63.59%), Query Frame = 1
Query: 19 WLDDILVPSTTFARHLKTLRVVLEYLLTAGLTVNFQKSNWCAPKDQLLGMVIGEAGVRPSAFKVEAII*LTLPRNVEQLRSVLGMTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYASQKISRADVRKS 603
WLDDIL+ S T HLK + VL+ L AG +V+F KS +C + + LG+++G +GVRP K++AI + P V LRS +GM + R FV +S I PLTD+LR+K ++K+AR + IPWG EQ+ + A+ AL S P+L+ PDW+ F LHT SE A GA LT+ VE + + + S + ++++ +++
Sbjct: 968 WLDDILIHSETLEEHLKKIDEVLKLLQEAGFSVHFDKSLFCMQEVEFLGVMVGRSGVRPPPSKIKAITEMEKPTTVGGLRSFVGMANFLRDFVKDFSAIVAPLTDILRNKDFSTKRARNLAIPWGEEQDAAHDAIIRALVSPPVLLPPDWELPFTLHTDASERAAGAVLTQVVEDHDTAIGFGSHRWTQSEAKRA 1162
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A6H5KW13_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW13_9PHAE) HSP 1 Score: 162 bits (409), Expect = 1.970e-42 Identity = 78/177 (44.07%), Postives = 118/177 (66.67%), Query Frame = 1
Query: 13 KSWLDDILVPSTTFARHLKTLRVVLEYLLTAGLTVNFQK-SNWCAPKDQLLGMVIGEAGVRPSAFKVEAII*LTLPRNVEQLRSVLGMTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVE 540
+ WLDD+ + S TF HL+ +R V++ L+ G T NFQK S + + + LG+++G GVRP+ K+ A+ L +P NV ++RS LG+ G R FVP +S I P+++LLR+ + +SK+AR +PWG EQ ++ L + LT+HP+L+ PDW + F +HT S LATGA LT+EV+
Sbjct: 1839 EKWLDDMGLHSATFEEHLELVRTVVKILIARGYTGNFQKKSEFFLSEIEFLGVMVGRDGVRPAPSKINAVQELAIPTNVGEVRSFLGLAGSLRGFVPNFSAITAPVSNLLRNPAFSSKKARLKKVPWGSEQAEAFLKIIELLTTHPVLILPDWSQPFTVHTDASTLATGAVLTQEVD 2015
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A6H5JF70_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF70_9PHAE) HSP 1 Score: 154 bits (390), Expect = 1.950e-40 Identity = 81/197 (41.12%), Postives = 122/197 (61.93%), Query Frame = 1
Query: 13 KSWLDDILVPSTTFARHLKTLRVVLEYLLTAGLTVNFQKSNWCAPKDQLLGMVIGEAGVRPSAFKVEAII*LTLPRNVEQLRSVLGMTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYASQKISRADVRKS 603
+ WLDDI + + T H L VL L G T +F KS + P+ + LG+++G G RP+ KV+A+ + LP V +LRS LG+ Y R FVP +S IA PL+D+LR+K +SK+AR + G Q ++ + L LT++P+LV P+W F LHT S +A G+ LT++VE+ E V YAS+++SR++ + S
Sbjct: 240 EKWLDDIALHTKTLEEHFVLLEKVLTILKQKGYTGHFVKSEFLLPELEFLGVMVGRDGTRPAPSKVKAVQEMELPSTVGELRSFLGLANYLRGFVPNFSAIAAPLSDILRNKEFSSKRARNKRVVMGPPQIEAYMKLVEKLTTYPVLVLPNWLEPFTLHTDASLIAAGSVLTQQVENREAPVGYASKRLSRSEEKLS 436
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A7G3AUZ3_LUTLO (RNA-directed DNA polymerase (Fragment) n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A7G3AUZ3_LUTLO) HSP 1 Score: 140 bits (353), Expect = 5.770e-35 Identity = 75/191 (39.27%), Postives = 113/191 (59.16%), Query Frame = 1
Query: 19 WLDDILVPSTTFARHLKTLRVVLEYLLTAGLTVNFQKSNWCAPKDQLLGMVIGEAGVRPSAFKVEAII*LTLPRNVEQLRSVLGMTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYASQKISRAD 591
+LDDI+V + F HL+ L+ V E L A LT+N +KS +CA + + LG + G+ + FKV AII L +PR V QLR +LGM G+ R+F+P Y+ + PLTDLL+ K GI W E +++ LK LT+ PIL PD+ + FI+ + S++ G L +E + E+ + Y S+K + A+
Sbjct: 322 FLDDIIVATMDFESHLEVLQEVSERLRKANLTINVEKSQFCADRLEYLGYTLSPEGIGTNDFKVSAIINLPVPRTVTQLRQILGMIGWFRRFLPSYATFSKPLTDLLKGKGKTG------GIIWTPEADEAFGKLKELLTTAPILKLPDYSKPFIVRSDASDVGAGGMLIQEEDGQEKVICYVSKKFTDAE 506
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: UPI001CF3F5A1 (LOW QUALITY PROTEIN: uncharacterized protein LOC122946632 n=1 Tax=Bufo gargarizans TaxID=30331 RepID=UPI001CF3F5A1) HSP 1 Score: 138 bits (347), Expect = 4.020e-34 Identity = 80/187 (42.78%), Postives = 113/187 (60.43%), Query Frame = 1
Query: 19 WLDDILVPSTTFARHLKTLRVVLEYLLTAGLTVNFQKSNWCAPKDQLLGMVIGEAGVRPSAFKVEAII*LTLPRNVEQLRSVLGMTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYASQKI 579
+LDDI+V S TF HL L VLE L + GL V +K + + + LG + + GV PS KV AI +PR + +L++ LG+TGY R+F+ Y++IA PL +LLR + Q + IPWG +QE++ ALK ALTS PIL Y D+D+ FIL T S GA L++ + ER + YAS+ +
Sbjct: 203 YLDDIIVYSATFQEHLNRLGQVLERLRSHGLKVKPKKCHLFKREIEYLGHRVSQDGVLPSQDKVAAIRQWLVPRTLRELKAFLGLTGYYRRFIKDYAKIAGPLNELLRG---TAGQPKGQSIPWGQKQEEAFQALKEALTSAPILAYADFDKSFILATDGSLYGLGAVLSQVQDGHERVIAYASRSL 386
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: UPI00094E5FEC (uncharacterized protein LOC109546305 n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=UPI00094E5FEC) HSP 1 Score: 137 bits (345), Expect = 6.930e-34 Identity = 69/193 (35.75%), Postives = 116/193 (60.10%), Query Frame = 1
Query: 19 WLDDILVPSTTFARHLKTLRVVLEYLLTAGLTVNFQKSNWCAPKDQLLGMVIGEAGVRPSAFKVEAII*LTLPRNVEQLRSVLGMTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYASQKISRADVR 597
+LDDI++ S TF HLK L +V + L AGL V K ++C P+ + LG ++ G+RP KV+AI+ +T PRNV ++R +G + R+FVP +S + PLT+L++ +KV W + +++ ++K++L S PIL PD++RKF+L T S GA LT+ + E+ + Y S+ ++ +++
Sbjct: 777 YLDDIVIISRTFEEHLKVLALVFDRLKDAGLVVREDKCHFCKPEMKYLGYLVDAHGLRPDPEKVQAIVNITPPRNVTEIRRFIGTASWYRRFVPNFSSVLAPLTNLIK---------KKVTWRWSEDCQRAFNSIKDSLISAPILTCPDFERKFVLQTDASHFGLGAVLTQTFDDGEKVISYLSRSLTHQEMK 960
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Match: A0A3B1IDL1_ASTMX (Ribonuclease H n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1IDL1_ASTMX) HSP 1 Score: 137 bits (344), Expect = 9.720e-34 Identity = 76/194 (39.18%), Postives = 115/194 (59.28%), Query Frame = 1
Query: 16 SWLDDILVPSTTFARHLKTLRVVLEYLLTAGLTVNFQKSNWCAPKDQLLGMVIGEAGVRPSAFKVEAII*LTLPRNVEQLRSVLGMTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLALKNALTSHPILVYPDWDRKFILHTHESELATGAALTKEVESCERFVVYASQKISRADVR 597
++LDD++V ST++A HL L VL+ LL AGLT N K + + Q LG IG +RP K AI P Q+R+ LG+ GY R+FVP +S IA+PLTD+ +K+ + + W + E++ LK ALTS P+L PD+ + FI+HT SE+ GA L++EV+ E +++ S+K++ + R
Sbjct: 919 AYLDDVVVHSTSWAEHLVHLSKVLDALLEAGLTANPAKCHLGLSEAQYLGYSIGRGILRPQESKTAAIKDCPRPTTKTQVRAFLGLAGYYRRFVPNFSSIAVPLTDM-------TKKRQPEEVQWSTDAEKAFTQLKEALTSAPVLRNPDFSQPFIVHTDASEIGLGAVLSQEVDGMEHPILFLSKKLNPTERR 1105 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4820.11915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4820.11915.1 >prot_H-paniculata_contig4820.11915.1 ID=prot_H-paniculata_contig4820.11915.1|Name=mRNA_H-paniculata_contig4820.11915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp MTGYSRQFVPRYSEIAIPLTDLLRDKSLASKQARKVGIPWGMEQEQSVLAback to top mRNA from alignment at H-paniculata_contig4820:6044..6646+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4820.11915.1 ID=mRNA_H-paniculata_contig4820.11915.1|Name=mRNA_H-paniculata_contig4820.11915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=603bp|location=Sequence derived from alignment at H-paniculata_contig4820:6044..6646+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4820:6044..6646+ >mRNA_H-paniculata_contig4820.11915.1 ID=mRNA_H-paniculata_contig4820.11915.1|Name=mRNA_H-paniculata_contig4820.11915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig4820:6044..6646+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |