mRNA_H-paniculata_contig11859.1192.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11859.1192.1
Unique NamemRNA_H-paniculata_contig11859.1192.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11859.1192.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.740e-18
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    4 IGFLAILVWNGIIDVVEVNFMMVGHTQFKFDQIFSRLAVGVRGKNIFTRSQQSEILKDSYKHLPVHCTALRN 219
            +GF  +LV   +I VVE+NFMMVGHT  K DQIFSR + G++GKNIFTR+Q +E+L+ SY  +PV C+ L N
Sbjct:   34 LGFAGLLVAASVIRVVEINFMMVGHTHMKIDQIFSRFSRGIKGKNIFTRTQLAEVLQASYTEVPVFCSTLGN 105
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BLAST of mRNA_H-paniculata_contig11859.1192.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 7.070e-16
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    4 IGFLAILVWNGIIDVVEVNFMMVGHTQFKFDQIFSRLAVGVRGKNIFTRSQQSEILKDSYKHLPVHCTALRN 219
            +G+  +LV   ++ VVE++FMMVGHT  K DQ+FSR + G++GKNIFTR+  +E L+ SY  +PV C+ LRN
Sbjct:  237 LGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFSRFSRGIKGKNIFTRTHLAEELRASYTEVPVFCSTLRN 308
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11859.1192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCW3_9PHAE4.740e-1856.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE7.070e-1651.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11859contigH-paniculata_contig11859:4324..5063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size221
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928896.0765421-CDS-H-paniculata_contig11859:4323..44331622928896.0765421-CDS-H-paniculata_contig11859:4323..4433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11859 4324..4433 +
1691480660.1976438-CDS-H-paniculata_contig11859:4323..44331691480660.1976438-CDS-H-paniculata_contig11859:4323..4433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11859 4324..4433 +
1622928896.1138434-CDS-H-paniculata_contig11859:4954..50631622928896.1138434-CDS-H-paniculata_contig11859:4954..5063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11859 4955..5063 +
1691480660.2079687-CDS-H-paniculata_contig11859:4954..50631691480660.2079687-CDS-H-paniculata_contig11859:4954..5063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11859 4955..5063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11859.1192.1prot_H-paniculata_contig11859.1192.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11859 4324..5063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11859.1192.1

>prot_H-paniculata_contig11859.1192.1 ID=prot_H-paniculata_contig11859.1192.1|Name=mRNA_H-paniculata_contig11859.1192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MIGFLAILVWNGIIDVVEVNFMMVGHTQFKFDQIFSRLAVGVRGKNIFTR
SQQSEILKDSYKHLPVHCTALRN
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mRNA from alignment at H-paniculata_contig11859:4324..5063+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11859.1192.1 ID=mRNA_H-paniculata_contig11859.1192.1|Name=mRNA_H-paniculata_contig11859.1192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=740bp|location=Sequence derived from alignment at H-paniculata_contig11859:4324..5063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGGTTTCCTTGCAATTCTCGTGTGGAACGGAATCATTGACGTGGT
GGAGGTCAACTTCATGATGGTTGGGCACACCCAATTCAAATTTGACCAGA
TCTTCTCCAGGTGACCTCACATCATGCTCGTCTTAGTGATTTCTGTTTTG
TGCAGACAGTTGCTAGAATAACAGATGCCGCAATTTGTGTAATACCAGTG
ACGTTGTGCTTGACACTGACAACGTCCCCAATTGGTATTGAATATGCCAA
GTTCCATTGACATGCATTGAAGTTAAACTGCACGCTGTAGCAGTACTCCA
ATATTCGTCAGTTTCGAATGCATTGTTACGTGGTGCTAACGACGTACTTG
ATGTATAACCTCATTTTTGTTGCATGCTCGTAGTTCTACAGTTTTTCTCT
TCTGTAGCTCACCATACAAACAGCTTAAATTCTTAAATTCTGCAATAGTA
TATTATTAGTTAATGCCATAGACATGATTGACACTATTGACTGTGCGCCA
AATGTTTTATGCAAGCGAGAGCTAGATCATCTGTGGCACGGCAACTTGTG
TACAACTCCTTTTTGACATTATTGCCATGATAATGGCTTTGTTTGCACTT
CTCCATCAATGTATCGTTCGCTGACGCGAAGGCTTGCTGTAGGTGTGCGT
GGCAAGAACATCTTCACCAGAAGTCAACAATCAGAGATCTTGAAGGACTC
CTACAAACACTTGCCTGTCCACTGTACGGCACTGAGGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig11859:4324..5063+

>mRNA_H-paniculata_contig11859.1192.1 ID=mRNA_H-paniculata_contig11859.1192.1|Name=mRNA_H-paniculata_contig11859.1192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig11859:4324..5063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGGTTTCCTTGCAATTCTCGTGTGGAACGGAATCATTGACGTGGT
GGAGGTCAACTTCATGATGGTTGGGCACACCCAATTCAAATTTGACCAGA
TCTTCTCCAGATGATTGGTTTCCTTGCAATTCTCGTGTGGAACGGAATCA
TTGACGTGGTGGAGGTCAACTTCATGATGGTTGGGCACACCCAATTCAAA
TTTGACCAGATCTTCTCCAGGCTTGCTGTAGGTGTGCGTGGCAAGAACAT
CTTCACCAGAAGTCAACAATCAGAGATCTTGAAGGACTCCTACAAACACT
TGCCTGTCCACTGTACGGCACTGAGGAACGCTTGCTGTAGGTGTGCGTGG
CAAGAACATCTTCACCAGAAGTCAACAATCAGAGATCTTGAAGGACTCCT
ACAAACACTTGCCTGTCCACTGTACGGCACTGAGGAAC
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