mRNA_H-paniculata_contig48102.11898.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48102.11898.1
Unique NamemRNA_H-paniculata_contig48102.11898.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig48102.11898.1 vs. uniprot
Match: A0A6H5KEB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.280e-30
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:  277 LSCGLQVTVRIRGKKSREEDYTNQAYDEYVKRLRPVLALETQWHKTDEDLEAAVRKDTGIVVSYEK 474
            L+CGLQ+TVRIRGKKSREEDYTNQAYDEY KRLRPVLAL+TQWHKTD+DLEAAVRKD G+VV  ++
Sbjct:   60 LTCGLQITVRIRGKKSREEDYTNQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDE 125
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BLAST of mRNA_H-paniculata_contig48102.11898.1 vs. uniprot
Match: W7TG35_9STRA (Ribosomal rna large subunit methyltransferase h n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG35_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 8.810e-16
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:  280 SCGLQVTVRIRGKKSREEDYTNQAYDEYVKRLRPVLALETQWHKTDEDLEAAVRKDTGIVVSYEKEKTRL 489
            +CGLQVT+ IRGK+S  E++ N AY EY KRLRPVL L T WHKTD +LEAA+ K+   V+  ++   +L
Sbjct:   68 ACGLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQL 137
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BLAST of mRNA_H-paniculata_contig48102.11898.1 vs. uniprot
Match: D7FIP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIP1_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.160e-13
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:  340 TNQAYDEYVKRLRPVLALETQWHKTDEDLEAAVRKDTGIVVSYEK 474
            + QAYDEY KRLRPVLAL+TQWHKTD+DLEAAVRKD G+VV  ++
Sbjct:   60 SKQAYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDE 104
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BLAST of mRNA_H-paniculata_contig48102.11898.1 vs. uniprot
Match: A0A7S2UUR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUR8_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.630e-12
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:  205 APRRLAERSCCKERIGRPENGVDSLSCGLQVTVRIRGKKSREEDYTNQAYDEYVKRLRPVLALETQWHKTDEDLEAAVRKDTGIVVSYEK 474
            +P R+  R+        P+ G   ++CGL+VT+ IRGKKS  ED+ +   DEY KRLR  L L+T+W+K D  L   V+K+ G++V+ ++
Sbjct:   31 SPERIISRA--------PKRGF--MTCGLEVTIHIRGKKSGGEDWISTGIDEYQKRLRSTLKLQTKWYKDDSALIQGVKKEKGVIVTLDE 110
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BLAST of mRNA_H-paniculata_contig48102.11898.1 vs. uniprot
Match: A0A7S2XIV0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XIV0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.430e-5
Identity = 36/109 (33.03%), Postives = 53/109 (48.62%), Query Frame = 1 
Query:  238 KERIGRPENGV----DSLSCGLQVTVRIRGKKSREEDYTNQAYDEYVKRLRPV-LALETQWHKTDEDLEAAVRKDTG----IVVSYEKEKTRLFMRPDLRAYTNLRPHG 537
            + R     NGV     SL  G++V +RI G+K+  E +   AY  Y  RLRP  + +ET WHK D++L   V+ D+     +V+   + K R   +     YT L   G
Sbjct:   38 RSRTSLTTNGVRRSRSSLCMGMEVRIRIVGRKNGSEKWLEDAYSMYETRLRPSNIDVETIWHKNDQELIKGVKGDSDKGHTVVLLDPRGKPRTSEQFSENMYTWLDQGG 146
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48102.11898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KEB2_9PHAE2.280e-3083.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TG35_9STRA8.810e-1654.29Ribosomal rna large subunit methyltransferase h n=... [more]
D7FIP1_ECTSI2.160e-1375.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UUR8_9STRA1.630e-1240.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2XIV0_9STRA5.430e-533.03Hypothetical protein n=1 Tax=Attheya septentrional... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48102contigH-paniculata_contig48102:139..1338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionAlpha/beta knot methyltransferases
Ec32 orthologEc-27_000500.1
Exons2
Model size685
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48102.11898.1prot_H-paniculata_contig48102.11898.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48102 223..1193 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.0764225-UTR-H-paniculata_contig48102:138..2221622930426.0764225-UTR-H-paniculata_contig48102:138..222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48102 139..222 +
1691481286.63567-UTR-H-paniculata_contig48102:138..2221691481286.63567-UTR-H-paniculata_contig48102:138..222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48102 139..222 +
1622930426.1229966-UTR-H-paniculata_contig48102:1193..13381622930426.1229966-UTR-H-paniculata_contig48102:1193..1338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48102 1194..1338 +
1691481286.668731-UTR-H-paniculata_contig48102:1193..13381691481286.668731-UTR-H-paniculata_contig48102:1193..1338Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig48102 1194..1338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930426.0924754-CDS-H-paniculata_contig48102:222..4861622930426.0924754-CDS-H-paniculata_contig48102:222..486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48102 223..486 +
1691481286.6492407-CDS-H-paniculata_contig48102:222..4861691481286.6492407-CDS-H-paniculata_contig48102:222..486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48102 223..486 +
1622930426.107693-CDS-H-paniculata_contig48102:1001..11931622930426.107693-CDS-H-paniculata_contig48102:1001..1193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48102 1002..1193 +
1691481286.6594431-CDS-H-paniculata_contig48102:1001..11931691481286.6594431-CDS-H-paniculata_contig48102:1001..1193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48102 1002..1193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48102.11898.1

>prot_H-paniculata_contig48102.11898.1 ID=prot_H-paniculata_contig48102.11898.1|Name=mRNA_H-paniculata_contig48102.11898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MTWYTARAIVKLSFILLSCNGFSSSFIGHVKAPCTGCGWGAPRRLAERSC
CKERIGRPENGVDSLSCGLQVTVRIRGKKSREEDYTNQAYDEYVKRLRPV
LALETQWHKTDEDLEAAVRKDTGIVVSYEKEKTRLFMRPDLRAYTNLRPH
G*
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mRNA from alignment at H-paniculata_contig48102:139..1338+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48102.11898.1 ID=mRNA_H-paniculata_contig48102.11898.1|Name=mRNA_H-paniculata_contig48102.11898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig48102:139..1338+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAATTTACCAGGTACTTTTCTTCTTCTGAGCGATCAGGCCCTCAGGAC
AGAGCCAGCAACAGGCCCCTACTTCTGGAGCTCAATGACTTGGTATACGG
CACGGGCAATTGTGAAGCTCAGTTTTATCCTGCTATCGTGCAACGGCTTC
AGCTCTTCTTTTATTGGGCACGTTAAAGCACCGTGTACGGGGTGTGGATG
GGGGGCTCCTCGGCGGCTGGCAGAGAGGTCATGCTGCAAGGAGAGGATAG
GGCGGCCTGAAAACGGCGTGGATTCCTTGAGTTGTGGATTGCAAGTTACA
GTTCGCATCAGGGGAAAGAAGAGCCGTGAAGAGGACTACACGAACCAAGT
GAGGCGTCGGACGTGATGATTATCCAGTGGTGGACCCACTCCGACCGTTT
TACCCTCTTTGTCAGAAAGATCGCATATTTATTCACTCATTTCTTACCCA
CGAATAAGAAATGTTTCGTGTCGTCATGATGGACAGTACCGTCCGTGCAC
TACCGTATTTGACCTGCTTCTCGATCGACACATCCTGGCATGGTAGGCAT
GTATCGTCGCTGTTCTGTCGGCGATTTCGCAGGTATATCAAGCTCCACTC
TTATCAATATTGCTATATGCCAACGCCTTTTTCGTCGAGTTCCTTATAAT
ATCGAGCACACATGTTGCTGTGGATGCAGTAGAGCCGCCCTCGCAGAAAT
GTTAATATATATATATATGAGCTACCTCTATGTGGTGTACTGTTTTTGTT
TAATTGTGTTGCACTACTGAACTGTGCTGCACAGCTAAATGTACACACAA
CATGCACACATCTGACTGCGCAAGATAACACACACCATCACCGCCTGTAT
CTTCGTGGGGCAGGCGTACGATGAATATGTGAAGCGACTGCGCCCAGTCC
TTGCATTGGAAACTCAGTGGCACAAAACAGACGAGGATCTCGAGGCGGCT
GTGCGCAAGGACACTGGTATTGTGGTGAGCTATGAGAAAGAGAAAACAAG
ACTATTCATGCGTCCAGATCTCCGCGCCTACACGAACCTACGCCCGCACG
GGTAGGGTACCTCGTGAACTGAGCATGGCTGGAAGTCTAGTCAGAGGCCT
TGTAGTGGGTGCAACCCCCATACTGCCTACTTGGTTCGGCCGAACCGGGG
TGGCGCCTACCCCGCAGAGGAATAAATAACACTGTTCTGGTAAAGGAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig48102:139..1338+

>mRNA_H-paniculata_contig48102.11898.1 ID=mRNA_H-paniculata_contig48102.11898.1|Name=mRNA_H-paniculata_contig48102.11898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig48102:139..1338+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTGGTATACGGCACGGGCAATTGTGAAGCTCAGTTTTATCCTGCT
ATCGTGCAACGGCTTCAGCTCTTCTTTTATTGGGCACGTTAAAGCACCGT
GTACGGGGTGTGGATGGGGGGCTCCTCGGCGGCTGGCAGAGAGGTCATGC
TGCAAGGAGAGGATAGGGCGGCCTGAAAACGGCGTGGATTCCTTGAGTTG
TGGATTGCAAGTTACAGTTCGCATCAGGGGAAAGAAGAGCCGTGAAGAGG
ACTACACGAACCAAATGACTTGGTATACGGCACGGGCAATTGTGAAGCTC
AGTTTTATCCTGCTATCGTGCAACGGCTTCAGCTCTTCTTTTATTGGGCA
CGTTAAAGCACCGTGTACGGGGTGTGGATGGGGGGCTCCTCGGCGGCTGG
CAGAGAGGTCATGCTGCAAGGAGAGGATAGGGCGGCCTGAAAACGGCGTG
GATTCCTTGAGTTGTGGATTGCAAGTTACAGTTCGCATCAGGGGAAAGAA
GAGCCGTGAAGAGGACTACACGAACCAAGCGTACGATGAATATGTGAAGC
GACTGCGCCCAGTCCTTGCATTGGAAACTCAGTGGCACAAAACAGACGAG
GATCTCGAGGCGGCTGTGCGCAAGGACACTGGTATTGTGGTGAGCTATGA
GAAAGAGAAAACAAGACTATTCATGCGTCCAGATCTCCGCGCCTACACGA
ACCTACGCCCGCACGGGTAGGCGTACGATGAATATGTGAAGCGACTGCGC
CCAGTCCTTGCATTGGAAACTCAGTGGCACAAAACAGACGAGGATCTCGA
GGCGGCTGTGCGCAAGGACACTGGTATTGTGGTGAGCTATGAGAAAGAGA
AAACAAGACTATTCATGCGTCCAGATCTCCGCGCCTACACGAACCTACGC
CCGCACGGGTAG
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