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Homology
BLAST of mRNA_H-paniculata_contig4803.11888.1 vs. uniprot
Match: A0A6H5L313_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L313_9PHAE) HSP 1 Score: 155 bits (391), Expect = 1.880e-36 Identity = 81/162 (50.00%), Postives = 105/162 (64.81%), Query Frame = 1
Query: 1012 GAEEKTCPYCGDESGSDVAKHLEECYQQVTAVRNARLGSATIRPPPFEEITAAFQARYTSLVG--MGLPPISGRAMADTSTVARQLLQRRIAYADFAALPDSGNFRLHRDLHGWTTSPSRLDLLHKELVRQRNVAMLELQTLERDEALLELKLRREWAHDDL 1491
G + TC YCG+E+G V++HLE CY++ TA+RN RL AT+RP P + V + LPP + + + + RQLL RRIAYA+F +LPD F+LH DL GW SPSRLD L+KELVRQRN A+ ELQ L+R+EA LE+ LR +W DDL
Sbjct: 1099 GVQNFTCVYCGEETGPRVSEHLERCYRKTTAMRNERLKHATLRPLPDNHFLQGGSRLGAASVTEPVSLPPSA--CLDSPAAIGRQLLSRRIAYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDL 1258
BLAST of mRNA_H-paniculata_contig4803.11888.1 vs. uniprot
Match: D8LQA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA3_ECTSI) HSP 1 Score: 149 bits (375), Expect = 2.160e-34 Identity = 79/162 (48.77%), Postives = 104/162 (64.20%), Query Frame = 1
Query: 1012 GAEEKTCPYCGDESGSDVAKHLEECYQQVTAVRNARLGSATIRPPPFEEITAAFQARYTSLVG--MGLPPISGRAMADTSTVARQLLQRRIAYADFAALPDSGNFRLHRDLHGWTTSPSRLDLLHKELVRQRNVAMLELQTLERDEALLELKLRREWAHDDL 1491
G + C YCG+E+G V++HLE CY++ TA+RN RL AT+RP + V + +PP + A+ + + RQLL RRIAYA+F +LPD F+LH DL GW SPSRLD L+KELVRQRN A+ ELQ L+R+EA LE+ LR +W DDL
Sbjct: 1125 GVQNFMCVYCGEETGPWVSEHLERCYRKTTAMRNERLKHATLRPLRDNHFLQGGSRLGAASVTEPVSVPPSA--ALDSPAAIGRQLLSRRIAYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMKDDL 1284
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1548 |
| Cds size | 1545 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4803.11888.1 >prot_H-paniculata_contig4803.11888.1 ID=prot_H-paniculata_contig4803.11888.1|Name=mRNA_H-paniculata_contig4803.11888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=515bp
STDTPFGSRKSRDISDRATAASVDTEAKHLGDGVGMTAQEPAAAVGGGTS VSTSLSHVADCPLASATTDNSNNNNNDYDDNGNGNGNGNGSGSGSGSRDN NEADSGTIYSAGANDEPNAQLSSKGKNATALKETGAPNRSTVVTTATGTG KRILPATDKHGGGIEVDVGVEQDANVACAEIGPAAAAQQQTSFTTLTAAA PSNDAVTAPPAKRPRIGPELATNPRLPSPAVPAAAAAAPEASGAPVAPAV VLMTPAAPATVPTTPVTLPVPRTLAASTTLTAPAIVPTISATPAAPAALV APAVAQGVQARQREGGQAAQRQVEVLRVQLNSAVQRAGAEEKTCPYCGDE SGSDVAKHLEECYQQVTAVRNARLGSATIRPPPFEEITAAFQARYTSLVG MGLPPISGRAMADTSTVARQLLQRRIAYADFAALPDSGNFRLHRDLHGWT TSPSRLDLLHKELVRQRNVAMLELQTLERDEALLELKLRREWAHDDLGGG LSRIWKSTNSGTSNN back to topmRNA from alignment at H-paniculata_contig4803:3717..9024+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4803.11888.1 ID=mRNA_H-paniculata_contig4803.11888.1|Name=mRNA_H-paniculata_contig4803.11888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5308bp|location=Sequence derived from alignment at H-paniculata_contig4803:3717..9024+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TCTACTGATACTCCCTTTGGGTCGAGAAAGTCAAGAGATATATCCGACAG
AGCGACGGCGGCGTCTGTCGATACCGAGGCAAAACATTTGGGAGATGGCG
TTGGCATGACCGCTCAAGAGCCCGCCGCCGCCGTCGGAGGGGGCACATCG
GTCTCGACATCGTTGTCACACGTTGCAGACTGCCCGCTCGCCTCCGCCAC
CACAGACAACAGCAACAACAATAACAACGATTACGACGACAACGGCAACG
GCAACGGCAACGGCAACGGCAGCGGCAGCGGCAGCGGCAGCCGGGACAAC
AACGAGGCTGATAGCGGCACCATATACAGCGCCGGGGCGAACGATGAGCC
CAACGCACAACTGTCAAGCAAGGGCAAAAACGCCACAGCTTTGAAAGAAA
CGGGCGCGCCCAACAGAAGCACCGTCGTTACAACGGCCACTGGCACCGGC
AAAAGGATCCTTCCTGCTACTGACAAACACGGCGGAGGAATCGAAGTCGA
CGTCGGGGTCGAACAAGATGCCAATGTAGCATGCGCGGAAATTGGGCCAG
CAGCGGCTGCACAGCAACAAACGTCATTCACAACGCTGACGGCTGCCGCA
CCGTCGAATGATGCAGTCACCGCGCCGCCGGCTAAACGGCCGAGGATTGG
CCCCGAGCTTGCAACCAATCCGCGATTGCCGTCGCCTGCTGTACCTGCAG
CGGCCGCGGCGGCACCAGAGGCATCAGGGGCACCAGTAGCACCCGCAGTA
GTATTGATGACACCAGCGGCACCGGCGACAGTACCGACGACACCGGTGAC
ACTGCCAGTACCGAGGACACTGGCAGCATCAACGACACTAACGGCACCGG
CGATAGTACCGACGATATCGGCGACACCGGCAGCACCGGCAGCACTGGTG
GCACCGGCAGTGGCGCAGGGTGTACAGGCGAGGCAAAGGGAAGGTGGCCA
GGCAGCGCAGCGTCAGGTGGAGGTGTTGCGGGTGCAGCTTAACAGTGCAG
TTCAGAGGGCGGGTGCGGAGGAGAAGACGTGTCCGTACTGTGGGGACGAG
AGCGGGTCGGATGTGGCTAAGCATTTGGAAGAGTGTTACCAACAGGTATG
TAGCTGGAATACGGTGTATTTGTGGAAAGAGGTTGTGGTTGCGTCGTTAT
GCCGTGGTGTAGTTCGATGCTCAGTGATGGTGGTGGTAGTGATGGTCTGT
AGGTGTTGAGTTCCCGACAAATGTTCTAAACACTACCGGTATGTGTTTTT
ACAAATATTTGTGTTCTAGTGACAAGTTACTATAATCATCCTGTTTTCGT
GTTGCAGAAGTTGGCACAGTGTACATTTTTCTGTTAGTTATTCCGTGTGT
ACGCGCCCTTTGAGCAGAAGAAACGCTTCGTGTATTTGAGAGGCCTTGCT
TCTGGCTGCTCCGCCTTTGGTTACACCTTGTTCCGTTGGTGTTTTTTAAG
CCTGGAGCATGTCGCTCCGTTTCGTTTTGTGCAATTCTCGGCTTTGAGAT
GACGGTTCATTGGGATACACTTGCATCCCCGAGTGCAACATTTTAGATCG
TTTGCATAGTGTACACCATAGCTCATGCTTCTTTCTCCCAGAGGTCTCTT
AACAATAACGTGGTCTATTTATCACTATACCAGGTTTTGTCGAAAGGATC
CATAATGTTTCAACATTTTGGAAAATATCCAGTTGGACAACAAAACGCAG
CAAAATTGACTTGTAAATAGTCCTGCTGGCTAGCCAGAGGCAGTAAGCAG
ATACCGCGGTGCCAGCAGATGCTTTTTCCAACAATAGTTTGGTTTTCATG
ATTTCAAATTATATGCGCACCATGTACAACATACATGGAGCTCTGGAAAG
TTGATGTACGTGTACATGGATAAACACCGATTGTCCCTGTATTTCAAACC
ACCCGTGGTACAAAATCATCAATAGCCGGCCGTCAATTCCAAAGGTGGCT
GCTGGCGGGACGGCTGCCTCTATCGCGCGATTATAGACGGCACGTCATGG
GACATGATTACATTGCCAGCCTTCAGACCGACGACGGCTCCTGATTGATC
GACGTATCGGACTAGTAGTGCAAGGCAAGAAAGCAAAAACAATCCGCGGG
ACAAAAAACGCGACAGAGACAAGTGAGGATATATACAGCCTCCACTGACG
CCTATTGCTTACCCATGAATGCCGATTTGGGACAAGAAGTGCTGCCAACC
TCATAACCGTAGTACACTCAATACTACCAAATTAGATCATTTGCCCTATA
CTTTCATAACTAATTTGCTTCCTCCCCTCGGCTAAAGTTACATGCTTGGC
ACCCATTGCGTGCGTGGTTTTGTGTGCAGGTGACCGCAGTGCGAAACGCT
CGACTCGGTTCCGCCACGATTCGCCCGCCCCCGTTCGAAGAGATCACGGC
CGCATTTCAAGCGCGGTACACGTCCCTCGTTGGTATGGGACTACCGCCGA
TTTCTGGTCGCGCAATGGCCGATACTTCCACCGTGGCGAGACAATTGCTT
CAGCGGCGAATCGCGTACGCGGATTTCGCTGCATTGCCAGACTCGGGGAA
TTTCCGGCTGCACCGCGACCTACATGGGTGGACGACCTCTCCTTCACGCC
TGGATCTCTTGCACAAGGAACTCGTTCGCCAACGGAATGTTGCGGTAAGG
CTCCGTTGTTAAGTGAAACTTCCCGTCGGGAAACAAAAGTAAGCCTTTCT
CGTTGGCGGCAGTACTGAAAATGGATGGCTTGTCAGTTGGCCACCAAACA
TCCTATTAAGCAAGTTATCGGCGATAGGCGGTATTCGTATGCAAACCGGG
ATCATGAACTTGGGTGCTGCGCATCTCGAAACATTGGACTCATTGCGAGC
ATTTCACATAGGCTCGGCTAGGCCTGACCAAATTTCCACGATTGCGGGGC
GTACATCATGCTTGCTTCCTGTATATGCAAGTTTGGGCCACTCTTTTTGA
AGGTTGAAGTGGAAACCCACACCTTCATTTTACAGGAAACACGGCTCCCG
CTTAATTTAGCTGTACGTTGTTGTAGTCTTGCTTTCCTAGTTCTTGTGTC
AGTTTATTATTGGCGTTAGAAAGAGACTTTCTTGTGTAAAATTGTGTTTG
TTTTTACCCGTGGTGTGCATAGCTTCGTGTGTAGAAGGAGGGGAATCTGA
AATGTGATGTTCTTGAATTGCTCAACCCCTTCACCGAACCCGATAGCTGG
GGTCTTGAGGGCAGAGGGTTATTATATGTGTTCAATAAAATGCAGTGGTA
CGTACATTTAGTCATCTGGAAGCGGCGCAATTGTTTTTAGTTGAAGAGGA
AGATCTTATGTTTGGTAATCCCTAAAGCGTTTTATCCGGGATCTTTACGG
CAGGAGCAATTGTATGTTTTTGTCGGCTGAACGGAGCATTCAACCATAGA
CATAGTGTGATGAGGCTCCTATATATCTCTGTGATATCGTTCACACGTAG
ATTATTGGTTATAGATATCCTCTAAGACTCACATTTATTAGTTCTCCCAG
TTCTCTTTGACTCCAAACCCAAAGGTTTGCGTAGCAGCGATTACCAAGGG
GGGGCGATCGTCCTCACGCAGGAACTACAGCTACATATTATAGTTCCTGC
GTGAACCCTAGCATTCTCTTCTCAAACCCGGAATCATCCTAACCAATACA
ACACCAAGTCAAACCGTTAAAAGACATACATGCTGGTTCTGGTCGAACCG
GCACATTTCAATAACGACGCCAAGAAGTATGTTGTCTTCCTACTCTAGCT
ACTACCGTCTCTGACCCTTATGACAATAGACTGTGAATAGATAAAGTCGC
GCTTTAGGAGTCAATGGTTGGTCGTAGTTTGATGCCATTGCTTGCTTTTT
TTCTGTTTGAGTTTCGTTTTTTTCGTTGAACTTGACGTTCTCAGCGTCGT
GGAGCGAAGAGATTAATTTAATGGTGTGTTAAGCTACCGCGGAATACAGC
AGTAAGGACTAACTGATGCAGAAACGAAAATATGCGAGCGTTTTTTTCAT
TCAAAACCTAATGAAACCAGAAGTACCAATGACTTCGGTTTCACCATTCA
TAAAGTAACGCATGGTGATATAAGAGTTCAACCTTCGGTTGTTGTATAGT
TTGGGAGGGTATAGGGGGGGGGTGCGTATTGGCTCCACCGAGTCGAGGAC
ACAACCATAGAGCCAGTCGCCCGTTATCTCAGCGACCCAGTGGTACATTA
CCGGCCCTCTCAAGAAGTCACCTCACAAGAAATTTAGCCTCAAATCTTGG
CATCTGTAAAAAACTCGATCATCACAACACTACCTTAGCAGATTGTGTTT
CAGTCCTGGCCCTAGTCTAAATTCGAATATATCAAAGACCGGAGACTCAC
ATTTTTTGGTGAAGCTACGATGCAATTTTGAGCTTCACCAAAAAGAAGAG
TTTCTTGTGAGTGGACCGATACTGCAATGTGGATACTTGCAAGCCGTTTC
CCCCACAGTAGCCTATGTTCAGGCCATCGTGGCCCAACTTGAAATACGAT
TGCTTGGCCGAGGCGGCAAGGATTATTTTTCGAAGAATACACTCCGCAGC
GCAACATGCGTGGAGGACAGTTGGAAACATGGTGAAGGAAATGAACGTTT
GAACCGACTCTCAAATAGTCGAAGCCTATCAACTTGTTGGGCACTCGCGC
TTTCGATGTATCCATGCTGCACACACATTGTCGACGTTGCCATATTTGTC
TGGTTCCATGACAAACTATTGCTTATCGAAATTTGCTGTGGTATGGCCCA
AGGTTTCAGTATTGTTATTTATGGCATTGCAAGTATAGCTTGTTTCGTTC
TTGTACCCTAGTGTGGTGTCCACCTGTATTGTACGTGTAAAGGTATTGAA
TCGTGGAGCTTGTAACTATGGATGCTGACTGACGTGCCTTTTTTTTGTCA
CAGTACGCTCAAAAGTTCGGCCTCTGCCAGCAGGGCCATGTTAGAAGTAA
AACACAGACCTTGAGACAACCTTCACGTGATACGGCACACAGCCGGTAGC
TCACCCTTGATTTACTCCCAAACTTCCCGTTACATGTTTCTTGTTGTGAA
CGTAATATATACAACCTCAACAAGCAGCTTGCATGTTACGCGTGCTTTTT
TGCGTATGGCGACCGTTCGTTTTCTCTCTCTTTTTCCCCCTCTCGTTTTG
CTCCCTGTTTATCACTTTGCAGATGCTGGAACTTCAGACGTTGGAGAGAG
ACGAAGCGTTGCTAGAGCTCAAGCTACGTCGCGAGTGGGCACATGACGAC
CTTGGCGGAGGGTTATCGCGAATTTGGAAAAGCACTAATAGTGGGACTTC
CAACAACA back to topCoding sequence (CDS) from alignment at H-paniculata_contig4803:3717..9024+ >mRNA_H-paniculata_contig4803.11888.1 ID=mRNA_H-paniculata_contig4803.11888.1|Name=mRNA_H-paniculata_contig4803.11888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3090bp|location=Sequence derived from alignment at H-paniculata_contig4803:3717..9024+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TCTACTGATACTCCCTTTGGGTCGAGAAAGTCAAGAGATATATCCGACAG AGCGACGGCGGCGTCTGTCGATACCGAGGCAAAACATTTGGGAGATGGCG TTGGCATGACCGCTCAAGAGCCCGCCGCCGCCGTCGGAGGGGGCACATCG GTCTCGACATCGTTGTCACACGTTGCAGACTGCCCGCTCGCCTCCGCCAC CACAGACAACAGCAACAACAATAACAACGATTACGACGACAACGGCAACG GCAACGGCAACGGCAACGGCAGCGGCAGCGGCAGCGGCAGCCGGGACAAC AACGAGGCTGATAGCGGCACCATATACAGCGCCGGGGCGAACGATGAGCC CAACGCACAACTGTCAAGCAAGGGCAAAAACGCCACAGCTTTGAAAGAAA CGGGCGCGCCCAACAGAAGCACCGTCGTTACAACGGCCACTGGCACCGGC AAAAGGATCCTTCCTGCTACTGACAAACACGGCGGAGGAATCGAAGTCGA CGTCGGGGTCGAACAAGATGCCAATGTAGCATGCGCGGAAATTGGGCCAG CAGCGGCTGCACAGCAACAAACGTCATTCACAACGCTGACGGCTGCCGCA CCGTCGAATGATGCAGTCACCGCGCCGCCGGCTAAACGGCCGAGGATTGG CCCCGAGCTTGCAACCAATCCGCGATTGCCGTCGCCTGCTGTACCTGCAG CGGCCGCGGCGGCACCAGAGGCATCAGGGGCACCAGTAGCACCCGCAGTA GTATTGATGACACCAGCGGCACCGGCGACAGTACCGACGACACCGGTGAC ACTGCCAGTACCGAGGACACTGGCAGCATCAACGACACTAACGGCACCGG CGATAGTACCGACGATATCGGCGACACCGGCAGCACCGGCAGCACTGGTG GCACCGGCAGTGGCGCAGGGTGTACAGGCGAGGCAAAGGGAAGGTGGCCA GGCAGCGCAGCGTCAGGTGGAGGTGTTGCGGGTGCAGCTTAACAGTGCAG TTCAGAGGGCGGGTGCGGAGGAGAAGACGTGTCCGTACTGTGGGGACGAG AGCGGGTCGGATGTGGCTAAGCATTTGGAAGAGTGTTACCAACAGTCTAC TGATACTCCCTTTGGGTCGAGAAAGTCAAGAGATATATCCGACAGAGCGA CGGCGGCGTCTGTCGATACCGAGGCAAAACATTTGGGAGATGGCGTTGGC ATGACCGCTCAAGAGCCCGCCGCCGCCGTCGGAGGGGGCACATCGGTCTC GACATCGTTGTCACACGTTGCAGACTGCCCGCTCGCCTCCGCCACCACAG ACAACAGCAACAACAATAACAACGATTACGACGACAACGGCAACGGCAAC GGCAACGGCAACGGCAGCGGCAGCGGCAGCGGCAGCCGGGACAACAACGA GGCTGATAGCGGCACCATATACAGCGCCGGGGCGAACGATGAGCCCAACG CACAACTGTCAAGCAAGGGCAAAAACGCCACAGCTTTGAAAGAAACGGGC GCGCCCAACAGAAGCACCGTCGTTACAACGGCCACTGGCACCGGCAAAAG GATCCTTCCTGCTACTGACAAACACGGCGGAGGAATCGAAGTCGACGTCG GGGTCGAACAAGATGCCAATGTAGCATGCGCGGAAATTGGGCCAGCAGCG GCTGCACAGCAACAAACGTCATTCACAACGCTGACGGCTGCCGCACCGTC GAATGATGCAGTCACCGCGCCGCCGGCTAAACGGCCGAGGATTGGCCCCG AGCTTGCAACCAATCCGCGATTGCCGTCGCCTGCTGTACCTGCAGCGGCC GCGGCGGCACCAGAGGCATCAGGGGCACCAGTAGCACCCGCAGTAGTATT GATGACACCAGCGGCACCGGCGACAGTACCGACGACACCGGTGACACTGC CAGTACCGAGGACACTGGCAGCATCAACGACACTAACGGCACCGGCGATA GTACCGACGATATCGGCGACACCGGCAGCACCGGCAGCACTGGTGGCACC GGCAGTGGCGCAGGGTGTACAGGCGAGGCAAAGGGAAGGTGGCCAGGCAG CGCAGCGTCAGGTGGAGGTGTTGCGGGTGCAGCTTAACAGTGCAGTTCAG AGGGCGGGTGCGGAGGAGAAGACGTGTCCGTACTGTGGGGACGAGAGCGG GTCGGATGTGGCTAAGCATTTGGAAGAGTGTTACCAACAGGTGACCGCAG TGCGAAACGCTCGACTCGGTTCCGCCACGATTCGCCCGCCCCCGTTCGAA GAGATCACGGCCGCATTTCAAGCGCGGTACACGTCCCTCGTTGGTATGGG ACTACCGCCGATTTCTGGTCGCGCAATGGCCGATACTTCCACCGTGGCGA GACAATTGCTTCAGCGGCGAATCGCGTACGCGGATTTCGCTGCATTGCCA GACTCGGGGAATTTCCGGCTGCACCGCGACCTACATGGGTGGACGACCTC TCCTTCACGCCTGGATCTCTTGCACAAGGAACTCGTTCGCCAACGGAATG TTGCGGTGACCGCAGTGCGAAACGCTCGACTCGGTTCCGCCACGATTCGC CCGCCCCCGTTCGAAGAGATCACGGCCGCATTTCAAGCGCGGTACACGTC CCTCGTTGGTATGGGACTACCGCCGATTTCTGGTCGCGCAATGGCCGATA CTTCCACCGTGGCGAGACAATTGCTTCAGCGGCGAATCGCGTACGCGGAT TTCGCTGCATTGCCAGACTCGGGGAATTTCCGGCTGCACCGCGACCTACA TGGGTGGACGACCTCTCCTTCACGCCTGGATCTCTTGCACAAGGAACTCG TTCGCCAACGGAATGTTGCGATGCTGGAACTTCAGACGTTGGAGAGAGAC GAAGCGTTGCTAGAGCTCAAGCTACGTCGCGAGTGGGCACATGACGACCT TGGCGGAGGGTTATCGCGAATTTGGAAAAGCACTAATAGTGGGACTTCCA ACAACATGCTGGAACTTCAGACGTTGGAGAGAGACGAAGCGTTGCTAGAG CTCAAGCTACGTCGCGAGTGGGCACATGACGACCTTGGCGGAGGGTTATC GCGAATTTGGAAAAGCACTAATAGTGGGACTTCCAACAAC back to top
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