mRNA_H-paniculata_contig48016.11887.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig48016.11887.1
Unique NamemRNA_H-paniculata_contig48016.11887.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.790e-28
Identity = 66/152 (43.42%), Postives = 92/152 (60.53%), Query Frame = 1
Query:    4 FCDSSYT-------TRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 438
            +CD+S+         RS+TG +F LA G+V  +S LQK+TA S+  AE+IA+A  A++  YL  +  ELGF   N  + SD+ GA+  A NS +  RSK I+ R+  LR  +    +V+  V S +QLADILTKH ERV F +LR+ V   G
Sbjct:  552 YCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 703          
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: A0A6H5JRF1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.880e-28
Identity = 66/152 (43.42%), Postives = 92/152 (60.53%), Query Frame = 1
Query:    4 FCDSSYT-------TRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 438
            +CD+S+         RS+TG +F LA G+V  +S LQK+TA S+  AE+IA+A  A++  YL  +  ELGF   N  + SD+ GA+  A NS +  RSK I+ R+  LR  +    +V+  V S +QLADILTKH ERV F +LR+ V   G
Sbjct:  369 YCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNILIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 520          
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 6.620e-27
Identity = 59/132 (44.70%), Postives = 91/132 (68.94%), Query Frame = 1
Query:    4 FCDSSYTT----RSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGF-QLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTK 384
            + D+SY +    +S TG+M FLA  L++FSSR+Q+I A S++E E   + + AK G Y  ++  ELG+ QL  F++ +D R AL L +N  +SNRS+HI++R+ ALR W+ S+++ +DHV S+  L+DILTK
Sbjct:  732 YSDASYASTKDYKSVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSDILTK 863          
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: UPI0019D5A978 (secreted RxLR effector protein 161-like n=2 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5A978)

HSP 1 Score: 109 bits (272), Expect = 1.440e-26
Identity = 60/148 (40.54%), Postives = 92/148 (62.16%), Query Frame = 1
Query:    1 GFCDSSY-----TTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICREL-GFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 426
            G+CDS       T++ST+GTMFFL + LV++    QK+ A S+ EAE IA A+ A QG +L  +  EL G ++D  E++ D++ AL L  N  +  RSKHI I++  +RD +    +  DH+++ DQLADI+TK   +  F ++R K+
Sbjct:   98 GYCDSDLAGDVDTSKSTSGTMFFLGDCLVYWQLTKQKVVALSSYEAEYIAAASAATQGLWLSRLLEELLGSKVDVVELKMDSKSALALTKNPVFHGRSKHIRIKYHFIRDCLEEGSIKADHISTTDQLADIVTKSLGKTKFQEMRKKI 245          
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: UPI000B4243C0 (uncharacterized protein LOC110430238 n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B4243C0)

HSP 1 Score: 103 bits (257), Expect = 1.180e-23
Identity = 59/148 (39.86%), Postives = 91/148 (61.49%), Query Frame = 1
Query:    1 GFCDSSY-----TTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICREL-GFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 426
            G+CDS       T++ST+GTMFFL + LV + S  Q++ A S+ EAE IA A+ A Q  +L  +  EL G ++D  E++ D++ AL LA N  + +RSKHI I++  +RD +    +   H+ + DQLADILTK   +  F ++R ++
Sbjct:  189 GYCDSDLAGDIDTSKSTSGTMFFLGDCLVTWQSIKQRVVALSSCEAEYIATASAATQALWLSRLLGELLGKEVDVVELKVDSKSALALAKNPIFHDRSKHIRIKYYFIRDCLEDGSIKASHIPTTDQLADILTKSLGKAKFQEMRRRI 336          
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: A0A060SLG8_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SLG8_PYCCI)

HSP 1 Score: 99.0 bits (245), Expect = 2.910e-21
Identity = 51/135 (37.78%), Postives = 84/135 (62.22%), Query Frame = 1
Query:   22 TTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 426
            T RS TG    LA G+  + SR QK  A S+TEAE +A++ C++Q  ++ N+  E+G+QL    +  DN+G+L + +N    +RSKHI IR+ A+R++I + Q+ +  +  +D  AD+ TK+   V FT+ R ++
Sbjct:  610 TRRSQTGYFLKLAGGVFSWQSRAQKTIAHSSTEAEYMAISDCSRQVVWIRNLLSEIGYQLGPIPIAGDNQGSLFMGSNPVTESRSKHIDIRYHAIREYIENKQVELFFIDGSDNPADLFTKNLGHVKFTKFRGQL 744          
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: A0A060SQN8_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SQN8_PYCCI)

HSP 1 Score: 98.2 bits (243), Expect = 4.580e-21
Identity = 51/135 (37.78%), Postives = 84/135 (62.22%), Query Frame = 1
Query:   22 TTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 426
            T +S TG    LA G+  + SR+QK  A S+TEAE +A++ C++Q  ++ N+  E+G+QL    +  DN+G L + +N    +RSKHI IR+ A+R++I + Q+ +  V  +D  AD+ TK+   V FT+ R ++
Sbjct:  388 TRQSQTGYFLKLAGGVFSWQSRVQKTIAHSSTEAEYMAISDCSRQVVWIRNLLSEIGYQLGPIPIAGDNQGPLFMGSNPVTESRSKHIDIRYHAIREYIENKQIELFFVDGSDNPADLFTKNLGHVKFTKFRGQL 522          
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: UPI00201A91CC (secreted RxLR effector protein 161-like n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI00201A91CC)

HSP 1 Score: 93.6 bits (231), Expect = 9.380e-21
Identity = 55/145 (37.93%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    1 GFCDSSYT-----TRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGF-QLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLR 417
            G+ DS Y       +ST+G +F +++G V +SS+ Q +   STTEAE I  A+CA+Q  ++  I  +LG+ Q    ++  DN   + L+ N     RSKHI +RF  L D  +   + ++H  S DQLADI+TK     VF +LR
Sbjct:   64 GYSDSDYAGDIEDRKSTSGYVFLISSGAVAWSSKKQPVVTLSTTEAEFIVAASCARQAVWMRRILEKLGYNQSKCTDIFCDNSSIIKLSKNPVMHGRSKHIDVRFHFLGDLTKDGVVKLEHCGSKDQLADIMTKPLRLKVFVRLR 208          
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: K1WIC8_MARBU (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Marssonina brunnea f. sp. multigermtubi (strain MB_m1) TaxID=1072389 RepID=K1WIC8_MARBU)

HSP 1 Score: 97.1 bits (240), Expect = 1.430e-20
Identity = 52/143 (36.36%), Postives = 88/143 (61.54%), Query Frame = 1
Query:    1 GFCDSSY-----TTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFQL-DNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQ 411
            G+CD+ Y     T +ST+G  F++++ L  + S+LQ I A STTEAE +A+ + AK+  Y+  +  ELG+ + D F + +DN GAL LA N  +  R+KHIA+++  +RD I    + + ++ + +Q AD  TK  +++ F +
Sbjct: 1020 GYCDADYAGDIGTAKSTSGFNFYISSSLFSWKSKLQSIIAQSTTEAEYMAINSAAKEAVYIKQLLTELGYYMQDKFSLYTDNNGALLLAKNLVFHERTKHIAVKYHYIRDLINKGIIDLVYIRTLNQKADGFTKALDKLKFNE 1162          
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: A0A8J6HGY6_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HGY6_TENMO)

HSP 1 Score: 95.9 bits (237), Expect = 1.580e-20
Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = 1
Query:   28 RSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFQ-LDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTK 384
            +S TG +F L  G V + +R QK  A S+TEAE + LA   K+ +YL +   ELG   L +  V  DN GAL LAAN  + NRSKHI I++  +RD ++   L + HV+SA+ +AD+LTK
Sbjct:  255 KSFTGYVFMLGGGPVSWDARKQKTVALSSTEAEYMGLAEATKEASYLRSFLIELGLDHLSSVVVYEDNLGALKLAANPTFHNRSKHIDIKYHFIRDAVKEKILSLSHVSSAEMVADVLTK 374          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J897_9PHAE2.790e-2843.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF1_9PHAE2.880e-2843.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV56_9PHAE6.620e-2744.70Integrase catalytic domain-containing protein n=1 ... [more]
UPI0019D5A9781.440e-2640.54secreted RxLR effector protein 161-like n=2 Tax=Pa... [more]
UPI000B4243C01.180e-2339.86uncharacterized protein LOC110430238 n=1 Tax=Sorgh... [more]
A0A060SLG8_PYCCI2.910e-2137.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SQN8_PYCCI4.580e-2137.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00201A91CC9.380e-2137.93secreted RxLR effector protein 161-like n=1 Tax=Ri... [more]
K1WIC8_MARBU1.430e-2036.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J6HGY6_TENMO1.580e-2045.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig48016contigH-paniculata_contig48016:633..1076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score99.0
Seed ortholog evalue2e-18
Seed eggNOG ortholog698440.XP_007297771.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrotransposon
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size444
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930424.5033472-CDS-H-paniculata_contig48016:632..10761622930424.5033472-CDS-H-paniculata_contig48016:632..1076Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48016 633..1076 +
1691481285.923256-CDS-H-paniculata_contig48016:632..10761691481285.923256-CDS-H-paniculata_contig48016:632..1076Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig48016 633..1076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig48016.11887.1prot_H-paniculata_contig48016.11887.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig48016 633..1076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig48016.11887.1

>prot_H-paniculata_contig48016.11887.1 ID=prot_H-paniculata_contig48016.11887.1|Name=mRNA_H-paniculata_contig48016.11887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
GFCDSSYTTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACA
KQGTYLLNICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFA
ALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFGK*
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mRNA from alignment at H-paniculata_contig48016:633..1076+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig48016.11887.1 ID=mRNA_H-paniculata_contig48016.11887.1|Name=mRNA_H-paniculata_contig48016.11887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=444bp|location=Sequence derived from alignment at H-paniculata_contig48016:633..1076+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTTTTGCGACTCATCATACACTACAAGATCAACAACTGGTACAATGTT CTTCCTGGCAAACGGACTTGTACACTTCTCATCCCGACTACAGAAGATCA CTGCTACAAGCACTACTGAGGCAGAGCTCATCGCACTAGCTGCATGCGCT AAACAAGGGACTTACCTTCTGAACATTTGCCGAGAGCTCGGTTTTCAGCT GGACAACTTTGAAGTGCGTTCGGACAACAGGGGCGCGCTCCACTTAGCAG CTAATAGCAATTACTCCAACCGCAGTAAACACATCGCCATCAGGTTCGCA GCACTAAGGGACTGGATCAGGAGCAATCAGCTTGTCATCGACCATGTAGC AAGCGCTGATCAGCTAGCTGACATCCTCACCAAGCATTGCGAGAGAGTAG TGTTCACCCAGCTGCGGAGCAAAGTCTTGACCTTTGGAAAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig48016:633..1076+

>mRNA_H-paniculata_contig48016.11887.1 ID=mRNA_H-paniculata_contig48016.11887.1|Name=mRNA_H-paniculata_contig48016.11887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig48016:633..1076+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTTTTGCGACTCATCATACACTACAAGATCAACAACTGGTACAATGTT
CTTCCTGGCAAACGGACTTGTACACTTCTCATCCCGACTACAGAAGATCA
CTGCTACAAGCACTACTGAGGCAGAGCTCATCGCACTAGCTGCATGCGCT
AAACAAGGGACTTACCTTCTGAACATTTGCCGAGAGCTCGGTTTTCAGCT
GGACAACTTTGAAGTGCGTTCGGACAACAGGGGCGCGCTCCACTTAGCAG
CTAATAGCAATTACTCCAACCGCAGTAAACACATCGCCATCAGGTTCGCA
GCACTAAGGGACTGGATCAGGAGCAATCAGCTTGTCATCGACCATGTAGC
AAGCGCTGATCAGCTAGCTGACATCCTCACCAAGCATTGCGAGAGAGTAG
TGTTCACCCAGCTGCGGAGCAAAGTCTTGACCTTTGGAAAATGAGGCTTT
TGCGACTCATCATACACTACAAGATCAACAACTGGTACAATGTTCTTCCT
GGCAAACGGACTTGTACACTTCTCATCCCGACTACAGAAGATCACTGCTA
CAAGCACTACTGAGGCAGAGCTCATCGCACTAGCTGCATGCGCTAAACAA
GGGACTTACCTTCTGAACATTTGCCGAGAGCTCGGTTTTCAGCTGGACAA
CTTTGAAGTGCGTTCGGACAACAGGGGCGCGCTCCACTTAGCAGCTAATA
GCAATTACTCCAACCGCAGTAAACACATCGCCATCAGGTTCGCAGCACTA
AGGGACTGGATCAGGAGCAATCAGCTTGTCATCGACCATGTAGCAAGCGC
TGATCAGCTAGCTGACATCCTCACCAAGCATTGCGAGAGAGTAGTGTTCA
CCCAGCTGCGGAGCAAAGTCTTGACCTTTGGAAAATGA
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