mRNA_H-paniculata_contig48016.11887.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 119 bits (297), Expect = 2.790e-28 Identity = 66/152 (43.42%), Postives = 92/152 (60.53%), Query Frame = 1
Query: 4 FCDSSYT-------TRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 438
+CD+S+ RS+TG +F LA G+V +S LQK+TA S+ AE+IA+A A++ YL + ELGF N + SD+ GA+ A NS + RSK I+ R+ LR + +V+ V S +QLADILTKH ERV F +LR+ V G
Sbjct: 552 YCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 703
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: A0A6H5JRF1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF1_9PHAE) HSP 1 Score: 118 bits (295), Expect = 2.880e-28 Identity = 66/152 (43.42%), Postives = 92/152 (60.53%), Query Frame = 1
Query: 4 FCDSSYT-------TRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 438
+CD+S+ RS+TG +F LA G+V +S LQK+TA S+ AE+IA+A A++ YL + ELGF N + SD+ GA+ A NS + RSK I+ R+ LR + +V+ V S +QLADILTKH ERV F +LR+ V G
Sbjct: 369 YCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNILIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 520
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE) HSP 1 Score: 115 bits (287), Expect = 6.620e-27 Identity = 59/132 (44.70%), Postives = 91/132 (68.94%), Query Frame = 1
Query: 4 FCDSSYTT----RSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGF-QLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTK 384
+ D+SY + +S TG+M FLA L++FSSR+Q+I A S++E E + + AK G Y ++ ELG+ QL F++ +D R AL L +N +SNRS+HI++R+ ALR W+ S+++ +DHV S+ L+DILTK
Sbjct: 732 YSDASYASTKDYKSVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSDILTK 863
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: UPI0019D5A978 (secreted RxLR effector protein 161-like n=2 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5A978) HSP 1 Score: 109 bits (272), Expect = 1.440e-26 Identity = 60/148 (40.54%), Postives = 92/148 (62.16%), Query Frame = 1
Query: 1 GFCDSSY-----TTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICREL-GFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 426
G+CDS T++ST+GTMFFL + LV++ QK+ A S+ EAE IA A+ A QG +L + EL G ++D E++ D++ AL L N + RSKHI I++ +RD + + DH+++ DQLADI+TK + F ++R K+
Sbjct: 98 GYCDSDLAGDVDTSKSTSGTMFFLGDCLVYWQLTKQKVVALSSYEAEYIAAASAATQGLWLSRLLEELLGSKVDVVELKMDSKSALALTKNPVFHGRSKHIRIKYHFIRDCLEEGSIKADHISTTDQLADIVTKSLGKTKFQEMRKKI 245
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: UPI000B4243C0 (uncharacterized protein LOC110430238 n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B4243C0) HSP 1 Score: 103 bits (257), Expect = 1.180e-23 Identity = 59/148 (39.86%), Postives = 91/148 (61.49%), Query Frame = 1
Query: 1 GFCDSSY-----TTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICREL-GFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 426
G+CDS T++ST+GTMFFL + LV + S Q++ A S+ EAE IA A+ A Q +L + EL G ++D E++ D++ AL LA N + +RSKHI I++ +RD + + H+ + DQLADILTK + F ++R ++
Sbjct: 189 GYCDSDLAGDIDTSKSTSGTMFFLGDCLVTWQSIKQRVVALSSCEAEYIATASAATQALWLSRLLGELLGKEVDVVELKVDSKSALALAKNPIFHDRSKHIRIKYYFIRDCLEDGSIKASHIPTTDQLADILTKSLGKAKFQEMRRRI 336
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: A0A060SLG8_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SLG8_PYCCI) HSP 1 Score: 99.0 bits (245), Expect = 2.910e-21 Identity = 51/135 (37.78%), Postives = 84/135 (62.22%), Query Frame = 1
Query: 22 TTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 426
T RS TG LA G+ + SR QK A S+TEAE +A++ C++Q ++ N+ E+G+QL + DN+G+L + +N +RSKHI IR+ A+R++I + Q+ + + +D AD+ TK+ V FT+ R ++
Sbjct: 610 TRRSQTGYFLKLAGGVFSWQSRAQKTIAHSSTEAEYMAISDCSRQVVWIRNLLSEIGYQLGPIPIAGDNQGSLFMGSNPVTESRSKHIDIRYHAIREYIENKQVELFFIDGSDNPADLFTKNLGHVKFTKFRGQL 744
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: A0A060SQN8_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SQN8_PYCCI) HSP 1 Score: 98.2 bits (243), Expect = 4.580e-21 Identity = 51/135 (37.78%), Postives = 84/135 (62.22%), Query Frame = 1
Query: 22 TTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKV 426
T +S TG LA G+ + SR+QK A S+TEAE +A++ C++Q ++ N+ E+G+QL + DN+G L + +N +RSKHI IR+ A+R++I + Q+ + V +D AD+ TK+ V FT+ R ++
Sbjct: 388 TRQSQTGYFLKLAGGVFSWQSRVQKTIAHSSTEAEYMAISDCSRQVVWIRNLLSEIGYQLGPIPIAGDNQGPLFMGSNPVTESRSKHIDIRYHAIREYIENKQIELFFVDGSDNPADLFTKNLGHVKFTKFRGQL 522
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: UPI00201A91CC (secreted RxLR effector protein 161-like n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI00201A91CC) HSP 1 Score: 93.6 bits (231), Expect = 9.380e-21 Identity = 55/145 (37.93%), Postives = 82/145 (56.55%), Query Frame = 1
Query: 1 GFCDSSYT-----TRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGF-QLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLR 417
G+ DS Y +ST+G +F +++G V +SS+ Q + STTEAE I A+CA+Q ++ I +LG+ Q ++ DN + L+ N RSKHI +RF L D + + ++H S DQLADI+TK VF +LR
Sbjct: 64 GYSDSDYAGDIEDRKSTSGYVFLISSGAVAWSSKKQPVVTLSTTEAEFIVAASCARQAVWMRRILEKLGYNQSKCTDIFCDNSSIIKLSKNPVMHGRSKHIDVRFHFLGDLTKDGVVKLEHCGSKDQLADIMTKPLRLKVFVRLR 208
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: K1WIC8_MARBU (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Marssonina brunnea f. sp. multigermtubi (strain MB_m1) TaxID=1072389 RepID=K1WIC8_MARBU) HSP 1 Score: 97.1 bits (240), Expect = 1.430e-20 Identity = 52/143 (36.36%), Postives = 88/143 (61.54%), Query Frame = 1
Query: 1 GFCDSSY-----TTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFQL-DNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQ 411
G+CD+ Y T +ST+G F++++ L + S+LQ I A STTEAE +A+ + AK+ Y+ + ELG+ + D F + +DN GAL LA N + R+KHIA+++ +RD I + + ++ + +Q AD TK +++ F +
Sbjct: 1020 GYCDADYAGDIGTAKSTSGFNFYISSSLFSWKSKLQSIIAQSTTEAEYMAINSAAKEAVYIKQLLTELGYYMQDKFSLYTDNNGALLLAKNLVFHERTKHIAVKYHYIRDLINKGIIDLVYIRTLNQKADGFTKALDKLKFNE 1162
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Match: A0A8J6HGY6_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HGY6_TENMO) HSP 1 Score: 95.9 bits (237), Expect = 1.580e-20 Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = 1
Query: 28 RSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFQ-LDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTK 384
+S TG +F L G V + +R QK A S+TEAE + LA K+ +YL + ELG L + V DN GAL LAAN + NRSKHI I++ +RD ++ L + HV+SA+ +AD+LTK
Sbjct: 255 KSFTGYVFMLGGGPVSWDARKQKTVALSSTEAEYMGLAEATKEASYLRSFLIELGLDHLSSVVVYEDNLGALKLAANPTFHNRSKHIDIKYHFIRDAVKEKILSLSHVSSAEMVADVLTK 374 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig48016.11887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig48016.11887.1 >prot_H-paniculata_contig48016.11887.1 ID=prot_H-paniculata_contig48016.11887.1|Name=mRNA_H-paniculata_contig48016.11887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp GFCDSSYTTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAback to top mRNA from alignment at H-paniculata_contig48016:633..1076+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig48016.11887.1 ID=mRNA_H-paniculata_contig48016.11887.1|Name=mRNA_H-paniculata_contig48016.11887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=444bp|location=Sequence derived from alignment at H-paniculata_contig48016:633..1076+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig48016:633..1076+ >mRNA_H-paniculata_contig48016.11887.1 ID=mRNA_H-paniculata_contig48016.11887.1|Name=mRNA_H-paniculata_contig48016.11887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig48016:633..1076+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |