mRNA_H-paniculata_contig4799.11876.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig4799.11876.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 199 bits (506), Expect = 6.710e-52 Identity = 98/189 (51.85%), Postives = 122/189 (64.55%), Query Frame = 2
Query: 1457 DVTHIKWDCCPCSFGRSYTGKEGFATISYQATVDHSGCVLAVTKGFPGATNDKSIIRTTWRCRWFYEDLHV*GPNVQALQRERYMDRAQGGVYLLVDNGYHGWAMFMPPSKRTLCGEETRWGKTLGSVRKDMGYFFGVLKGRFRILKLPILYREKEDIDNIFFVCCILHNMLDAHDGLDVLEEDVNWTG 2023
DVTHI W CP + RSYTGKEG+ T++YQ TVDH+ VLAVT GF G+TNDKSIIR ED + + + +G YLLVDNGYH W +PPSK + + + K L SVRKD+ FFG++KGRFRILKL I Y ++EDIDN+FF CCILHNML ++D +EE+ NW G
Sbjct: 234 DVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKG-CYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAG 421
BLAST of mRNA_H-paniculata_contig4799.11876.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 196 bits (499), Expect = 3.290e-51 Identity = 106/243 (43.62%), Postives = 140/243 (57.61%), Query Frame = 2
Query: 1310 SASSISQVLQ---EHFGRAV--R*AYLPADGAGSREGYA*VWPLGAHRGRRLVIDVTHIKWDCCPCSFGRSYTGKEGFATISYQATVDHSGCVLAVTKGFPGATNDKSIIRTTWRCRWFYEDLHV*GPNVQALQRERYMDRAQGGVYLLVDNGYHGWAMFMPPSKRTLCGEETRWGKTLGSVRKDMGYFFGVLKGRFRILKLPILYREKEDIDNIFFVCCILHNMLDAHDGLDVLEEDVNWTG 2023
S ++ +V EHF + +LP++ G + + G DVTHI W CP + GRSYTGKEG T+ YQ TV+H+G VLAVT+GF G+TNDK+II D +++ + +G YL+VDNGYH W M + PSK L + + K L SVRKD+ FFG+LK RFRILKL + Y+++E +D +FF CCILHNML HDG+ LEEDVNW G
Sbjct: 151 STPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKG-CYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVG 392
BLAST of mRNA_H-paniculata_contig4799.11876.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI) HSP 1 Score: 187 bits (474), Expect = 1.290e-49 Identity = 94/216 (43.52%), Postives = 124/216 (57.41%), Query Frame = 2
Query: 1370 YLPADGAGSREGYA*VWPLGAHRGRRLVIDVTHIKWDCCPCSFGRSYTGKEGFATISYQATVDHSGCVLAVTKGFPGATNDKSIIRTTWRCRWFYEDLHV*GPNVQALQRERYMDRAQGGVYLLVDNGYHGWAMFMPPSKRTLCGEETRWGKTLGSVRKDMGYFFGVLKGRFRILKLPILYREKEDIDNIFFVCCILHNMLDAHDGLDVLEEDVNW 2017
+LP + +G + + G +DVTHI W CP + RSYTGKEGF TI YQ TVDH+G +AVT+GF G+TNDK+ + D ++ +G Y+LVDNGYH W + + PSK L + + K L SVRKD+ FFG+LKGR RIL L + ++ +E IDN+FF CCILHNML DG+D L E+ NW
Sbjct: 7 HLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKG-CYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNW 221
BLAST of mRNA_H-paniculata_contig4799.11876.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE) HSP 1 Score: 185 bits (470), Expect = 1.700e-49 Identity = 93/185 (50.27%), Postives = 119/185 (64.32%), Query Frame = 2
Query: 1484 CPCSFGRSYTGKEGFATISYQATVDHSGCVLAVTKGFPGATNDKSIIR-----TTWRCRWFYEDLHV*GPNVQALQRERYMDRAQGGVYLLVDNGYHGWAMFMPPSKRTLCGEETRWGKTLGSVRKDMGYFFGVLKGRFRILKLPILYREKEDIDNIFFVCCILHNMLDAHDGLDVLEEDVNWTG 2023
CP + GRS+TGKEGF TI+Y+ TVDH G LAVT GF GATNDK+IIR R Y + L++ +R + G +L++DN YH W + PSK ++T + + L SVRKD+ FFG+LKGRFRILKL + Y ++E IDNIFF CCILHNML DGLDV +E+ +WTG
Sbjct: 2 CPFTLGRSFTGKEGFPTIAYEVTVDHVGRALAVTNGFTGATNDKTIIRYDSGVNNIRTESQYTEREY------KLRKVNGTERTRRGCFLIMDNWYHEWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFDENTDWTG 180
BLAST of mRNA_H-paniculata_contig4799.11876.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE) HSP 1 Score: 182 bits (461), Expect = 1.820e-48 Identity = 91/180 (50.56%), Postives = 115/180 (63.89%), Query Frame = 2
Query: 1484 CPCSFGRSYTGKEGFATISYQATVDHSGCVLAVTKGFPGATNDKSIIRTTWRCRWFYEDLHV*GPNVQALQRERYMDRAQGGVYLLVDNGYHGWAMFMPPSKRTLCGEETRWGKTLGSVRKDMGYFFGVLKGRFRILKLPILYREKEDIDNIFFVCCILHNMLDAHDGLDVLEEDVNWTG 2023
CP + RSYTGKEG+ T++YQ TVDH+ VLAVT GF G+TNDKSIIR ED + + + +G YLLVDNGYH W +PPSK + + + K L SVRKD+ FFG++KG FRILKL I Y ++EDIDN+FF CCILHNML ++D +EE+ NW G
Sbjct: 2 CPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKG-CYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAG 180
BLAST of mRNA_H-paniculata_contig4799.11876.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 186 bits (472), Expect = 1.940e-48 Identity = 97/195 (49.74%), Postives = 121/195 (62.05%), Query Frame = 2
Query: 1457 DVTHIKWDCCPCSFGRSYTGKEGFATISYQATVDHSGCVLAVTKGFPGATNDKSIIRTTWRCRWFYEDLHV*GPNVQALQRERYMDRAQG------GVYLLVDNGYHGWAMFMPPSKRTLCGEETRWGKTLGSVRKDMGYFFGVLKGRFRILKLPILYREKEDIDNIFFVCCILHNMLDAHDGLDVLEEDVNWTG 2023
DVTHI W+ CP + GRS+TGKEGF TI+Y TVDH G LAVT GF GATNDK+IIR + ++ Q +RE + +A G G +L+VDNGYH W + PSK E+T + + L SVRKD+G F RILKL + Y ++E +DNIFF CCILHNML DGLDV EE+ +WTG
Sbjct: 112 DVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIR-------YDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLDVFEENTDWTG 291
BLAST of mRNA_H-paniculata_contig4799.11876.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 186 bits (472), Expect = 1.040e-47 Identity = 105/268 (39.18%), Postives = 138/268 (51.49%), Query Frame = 2
Query: 1310 SASSISQVLQE---HFGRAV--R*AYLPADGAGSREGYA*VWPLGAHRGRRLVIDVTHIKWDCCPCSFGRSYTGKEGFATISYQATVDHSGCVLAVTKGFPGATNDKSIIRTTWRCRWFYEDLHV*GPNVQA---------------------------LQRERYMDRAQGGVYLLVDNGYHGWAMFMPPSKRTLCGEETRWGKTLGSVRKDMGYFFGVLKGRFRILKLPILYREKEDIDNIFFVCCILHNMLDAHDGLDVLEEDVNW 2017
SA ++ + + HF R + +LP + +G + + G +DVTHI W CP + RSYTGKEGF TI+YQ TVDH+G +AVT+GF G+TNDK+I+ + D H + E G YLLVDNGYH W + + PSK L + + K L SVRKD+ FFG+LKGRFRILKL + Y+ +E IDN+FF C ILHNML DG+D L E+ NW
Sbjct: 109 SAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNW 376
BLAST of mRNA_H-paniculata_contig4799.11876.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 182 bits (462), Expect = 7.660e-47 Identity = 100/250 (40.00%), Postives = 134/250 (53.60%), Query Frame = 2
Query: 1310 SASSISQVLQE---HFGRAV--R*AYLPADGAGSREGYA*VWPLGAHRGRRLVIDVTHIKWDCCPCSFGRSYTGKEGFATISYQATVDHSGCVLAVTKGFPGATNDKSIIRTTWRCRWFYEDLHV*GPNVQA---LQRERYMDRAQGGVYLLVDNGYHGWAMFMPPSKRTLCGEETRWGKTLGSVRKDMGYFFGVLKGRFRILKLPILYREKEDIDNIFFVCCILHNMLDAHDGLDVLEEDVNWTGGRSA 2035
SA ++ + + HF R + YLP++ G + + G +DVTHI W CP + RSYTGKEG T+ YQ TV+H+G +AVT+GF +TNDK+ + W E + + + E G YLLVDNGYH W + M P+K L + + K L SVRKD+ FFG+LKG FRI K+ + Y E+E IDN+FF CCILHNML DG+D L E+ W A
Sbjct: 122 SAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTV--CWDA--VVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSAGA 367
BLAST of mRNA_H-paniculata_contig4799.11876.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 182 bits (463), Expect = 8.210e-47 Identity = 95/194 (48.97%), Postives = 122/194 (62.89%), Query Frame = 2
Query: 1457 DVTHIKWDCCPCSFGRSYTGKEGFATISYQATVDHSGCVLAVTKGFPGATNDKSIIR-----TTWRCRWFYEDLHV*GPNVQALQRERYMDRAQGGVYLLVDNGYHGWAMFMPPSKRTLCGEETRWGKTLGSVRKDMGYFFGVLKGRFRILKLPILYREKEDIDNIFFVCCILHNMLDAHDGLDVLEEDVNWTG 2023
DVTHI W CP + R YTGKEG T+++Q TVDHSG VLAVT+GF GATNDK+IIR T R Y + + A +++ ++ G YLLVDNGYH W +PPSK + + + K L S RKD+ +FG+LKGRFRI KL I + ++E IDN+FF CCILHNML + D + E+ NW G
Sbjct: 159 DVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKY---KLYAQDGQQFEEK---GCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAG 346
BLAST of mRNA_H-paniculata_contig4799.11876.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 182 bits (463), Expect = 5.860e-46 Identity = 95/194 (48.97%), Postives = 122/194 (62.89%), Query Frame = 2
Query: 1457 DVTHIKWDCCPCSFGRSYTGKEGFATISYQATVDHSGCVLAVTKGFPGATNDKSIIR-----TTWRCRWFYEDLHV*GPNVQALQRERYMDRAQGGVYLLVDNGYHGWAMFMPPSKRTLCGEETRWGKTLGSVRKDMGYFFGVLKGRFRILKLPILYREKEDIDNIFFVCCILHNMLDAHDGLDVLEEDVNWTG 2023
DVTHI W CP + R YTGKEG T+++Q TVDHSG VLAVT+GF GATNDK+IIR T R Y + + A +++ ++ G YLLVDNGYH W +PPSK + + + K L S RKD+ +FG+LKGRFRI KL I + ++E IDN+FF CCILHNML + D + E+ NW G
Sbjct: 250 DVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKY---KLYAQDGQQFEEK---GCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAG 437 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4799.11876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4799.11876.1 >prot_H-paniculata_contig4799.11876.1 ID=prot_H-paniculata_contig4799.11876.1|Name=mRNA_H-paniculata_contig4799.11876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp MEEEDRRIQLLGARALSDAAIAAVEKAEREDRDEPCVKRTRCVYPGKDYGback to top mRNA from alignment at H-paniculata_contig4799:10055..13727- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4799.11876.1 ID=mRNA_H-paniculata_contig4799.11876.1|Name=mRNA_H-paniculata_contig4799.11876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3673bp|location=Sequence derived from alignment at H-paniculata_contig4799:10055..13727- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4799:10055..13727- >mRNA_H-paniculata_contig4799.11876.1 ID=mRNA_H-paniculata_contig4799.11876.1|Name=mRNA_H-paniculata_contig4799.11876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig4799:10055..13727- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |