mRNA_H-paniculata_contig4796.11871.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4796.11871.1
Unique NamemRNA_H-paniculata_contig4796.11871.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 9.550e-28
Identity = 55/94 (58.51%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 YQEWYTDVFLPILNEKMPWL--KEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALV 276
            Y++WY DV LP + EKMPWL  K VVV QDGASPH GKG P  L  AG    W ++L+ QP QSPDL+INDLG F SLK RVW     ++D LV
Sbjct:  271 YKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: UPI000B8AB67D (uncharacterized protein LOC110800636 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AB67D)

HSP 1 Score: 76.6 bits (187), Expect = 3.580e-14
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   19 DVFLPILNEKMPWL--KEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIY 297
            D  LP +  K PW   K++++ QD + PH+       L  A +E  +NI+LI QPPQSPDL++ DLGFF +++S   ++  R ++ALV+AVK  Y
Sbjct:  375 DELLPAIRSKWPWFASKDILIQQDNSRPHINPNDAEFLDAATQEG-FNIQLICQPPQSPDLNVLDLGFFRAIQSLQHQKFPRDVEALVKAVKEAY 468          
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: A0A329SNK0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SNK0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 9.980e-14
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = 1
Query:    1 YQEWYTDVFLPILNEKMPW---LKEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIY 297
            Y+ +  +  +P +  K P     + + + QD A+PH+    P  +  AG  D+WNI+L+ QPP S DL++ DLGFF S++   +R++ R ++ L+ AV   +
Sbjct:   25 YKHYIIEEVIPAIKAKWPASERARTIFIQQDNATPHVPVSEPD-VVAAGTSDDWNIRLLFQPPNSSDLNVLDLGFFASIQCIQYRQQTRDIENLIRAVTEAF 125          
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: A0A2P4X320_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X320_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 9.950e-13
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    1 YQEWYTDVFLPILNEKMP----WLKEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIY 297
            Y+ +  D  +P      P    W + +++ QD A PH+    P  +  AG E EWNI+L+ QPP SPD++  DLG F SL+ +  RE    ++  +E+VKS Y
Sbjct:  257 YKTFLLDDVIPATKANWPRREKW-RPILIQQDNAKPHLSPFDPD-IVAAGTEGEWNIRLLFQPPNSPDMNCLDLGLFASLQVKQHREVVTGIEGKIESVKSAY 357          
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: A0A484KLW2_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KLW2_9ASTE)

HSP 1 Score: 72.0 bits (175), Expect = 1.550e-12
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   28 LPILNEKMPW-LKEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIY 297
            LP + EK P   + ++V QD A PH+    P  ++ A +ED WNI+L  QPP SPDL++ DLGFF  + S   +   R+L  L++AV + Y
Sbjct:  615 LPAIKEKWPGPSRNIIVQQDNAKPHVDGSDPDLIEAA-QEDNWNIQLKFQPPNSPDLNVLDLGFFRFIDSLQDQTAARSLTKLIQAVTTAY 704          
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: A0A484KH84_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KH84_9ASTE)

HSP 1 Score: 71.6 bits (174), Expect = 2.050e-12
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   28 LPILNEKMPW-LKEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIY 297
            LP + EK P   + ++V QD A PH+    P  L  A +ED WNI+L  QPP S DL++ DLGFF S+ S   +   R+L  L++AV + Y
Sbjct:  317 LPAIKEKWPGPSRNIIVQQDNAKPHVDGSDPD-LMEAAQEDNWNIQLKFQPPNSSDLNVLDLGFFRSIDSLQDQTAARSLTELIQAVTTAY 406          
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: UPI00053F2A94 (uncharacterized protein LOC104896197 n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F2A94)

HSP 1 Score: 69.3 bits (168), Expect = 1.310e-11
Identity = 35/94 (37.23%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   28 LPILNEKMP--WLKEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIYGR 303
            LP +  K P    K++ + QD A PH+ +G     K A  ++ +NI LI QPPQSPDL++ DLGFF ++++ +++   + +D L+  V+  Y R
Sbjct:  319 LPSIMSKWPAGMSKDICIQQDNARPHI-QGNDEAFKAAATQNGFNIMLIQQPPQSPDLNVLDLGFFRAIQALMYQTFPKNIDELITNVQDAYDR 411          
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: UPI000B8A8D67 (uncharacterized protein LOC110790078 n=2 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A8D67)

HSP 1 Score: 68.2 bits (165), Expect = 2.270e-11
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   19 DVFLPILNEKMPW--LKEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIYG 300
            D  LP +  K P    KE+ + QD A PH+      + K A  +D +NI+LI QP QSPD+++ DLGFF +++   ++E  +++D L++ VK  Y 
Sbjct:  125 DEMLPAIRSKWPLGACKEIWIQQDNARPHI-HAEDTQFKEAATKDGFNIRLINQPAQSPDMNVLDLGFFRTIQLIQYKEFPKSVDELIKEVKDAYN 219          
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: UPI00053F54E0 (uncharacterized protein LOC104893356 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F54E0)

HSP 1 Score: 68.6 bits (166), Expect = 2.400e-11
Identity = 35/94 (37.23%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   28 LPILNEKMP--WLKEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIYGR 303
            LP +  K P    K++ + QD A PH+ +G     K A  ++ +NI LI QPPQSPDL++ DLGFF ++++ +++   + +D L+  V+  Y R
Sbjct:  304 LPSIMSKWPAGLSKDIFIQQDNARPHI-QGNNEAFKAAATQNGFNIMLIQQPPQSPDLNVLDLGFFRAIQALMYQTFPKNIDELITNVQDAYDR 396          
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: A0A225UMU9_9STRA (Mar9 Transposase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UMU9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.660e-11
Identity = 34/103 (33.01%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    1 YQEWYTDVFLPILNEKMPWLKE---VVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIYG 300
            Y+ +  +  +P +  K P  ++   +++ QD A+ H     P  +  AGRED+WNI+L  QPP SPD +  DLG+F S+++  ++     LD L+ A  + Y 
Sbjct:   36 YKRYLLENGIPAIKAKSPITEKCMPIIIQQDNATHHCKPDDPD-IAAAGREDDWNIQLDFQPPNSPDCNTLDLGYFTSIQALQYQADCYNLDQLIYAENTSYA 137          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE9.550e-2858.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000B8AB67D3.580e-1442.11uncharacterized protein LOC110800636 n=1 Tax=Spina... [more]
A0A329SNK0_9STRA9.980e-1433.33Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A2P4X320_9STRA9.950e-1336.89Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
A0A484KLW2_9ASTE1.550e-1241.76Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A484KH84_9ASTE2.050e-1242.86Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
UPI00053F2A941.310e-1137.23uncharacterized protein LOC104896197 n=3 Tax=Beta ... [more]
UPI000B8A8D672.270e-1137.50uncharacterized protein LOC110790078 n=2 Tax=Spina... [more]
UPI00053F54E02.400e-1137.23uncharacterized protein LOC104893356 n=1 Tax=Beta ... [more]
A0A225UMU9_9STRA2.660e-1133.01Mar9 Transposase n=1 Tax=Phytophthora megakarya Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4796contigH-paniculata_contig4796:8217..8522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue6.8e-10
Seed eggNOG ortholog4792.ETI53958
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,3QHYQ@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930421.5847375-CDS-H-paniculata_contig4796:8216..85221622930421.5847375-CDS-H-paniculata_contig4796:8216..8522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4796 8217..8522 +
1691481284.6575232-CDS-H-paniculata_contig4796:8216..85221691481284.6575232-CDS-H-paniculata_contig4796:8216..8522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4796 8217..8522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4796.11871.1prot_H-paniculata_contig4796.11871.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4796 8217..8522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4796.11871.1

>prot_H-paniculata_contig4796.11871.1 ID=prot_H-paniculata_contig4796.11871.1|Name=mRNA_H-paniculata_contig4796.11871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
YQEWYTDVFLPILNEKMPWLKEVVVHQDGASPHMGKGMPRKLKLAGREDE
WNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIYG
R*
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mRNA from alignment at H-paniculata_contig4796:8217..8522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4796.11871.1 ID=mRNA_H-paniculata_contig4796.11871.1|Name=mRNA_H-paniculata_contig4796.11871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig4796:8217..8522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCAGGAGTGGTACACGGATGTTTTCCTCCCCATATTGAATGAAAAGAT GCCATGGTTGAAGGAAGTGGTCGTGCATCAGGACGGCGCGAGCCCGCACA TGGGCAAGGGCATGCCAAGGAAGCTAAAACTCGCGGGGAGGGAGGACGAA TGGAACATCAAGCTCATAATGCAGCCGCCGCAGTCTCCCGATCTCCATAT TAACGATTTGGGCTTTTTCGTATCCCTGAAATCTAGAGTGTGGAGGGAGC GCTACCGTACGTTAGACGCCCTTGTAGAGGCGGTTAAGAGCATATACGGC CGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4796:8217..8522+

>mRNA_H-paniculata_contig4796.11871.1 ID=mRNA_H-paniculata_contig4796.11871.1|Name=mRNA_H-paniculata_contig4796.11871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig4796:8217..8522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCAGGAGTGGTACACGGATGTTTTCCTCCCCATATTGAATGAAAAGAT
GCCATGGTTGAAGGAAGTGGTCGTGCATCAGGACGGCGCGAGCCCGCACA
TGGGCAAGGGCATGCCAAGGAAGCTAAAACTCGCGGGGAGGGAGGACGAA
TGGAACATCAAGCTCATAATGCAGCCGCCGCAGTCTCCCGATCTCCATAT
TAACGATTTGGGCTTTTTCGTATCCCTGAAATCTAGAGTGTGGAGGGAGC
GCTACCGTACGTTAGACGCCCTTGTAGAGGCGGTTAAGAGCATATACGGC
CGGTAATACCAGGAGTGGTACACGGATGTTTTCCTCCCCATATTGAATGA
AAAGATGCCATGGTTGAAGGAAGTGGTCGTGCATCAGGACGGCGCGAGCC
CGCACATGGGCAAGGGCATGCCAAGGAAGCTAAAACTCGCGGGGAGGGAG
GACGAATGGAACATCAAGCTCATAATGCAGCCGCCGCAGTCTCCCGATCT
CCATATTAACGATTTGGGCTTTTTCGTATCCCTGAAATCTAGAGTGTGGA
GGGAGCGCTACCGTACGTTAGACGCCCTTGTAGAGGCGGTTAAGAGCATA
TACGGCCGGTAA
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