mRNA_H-paniculata_contig4796.11871.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE) HSP 1 Score: 112 bits (281), Expect = 9.550e-28 Identity = 55/94 (58.51%), Postives = 64/94 (68.09%), Query Frame = 1
Query: 1 YQEWYTDVFLPILNEKMPWL--KEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALV 276
Y++WY DV LP + EKMPWL K VVV QDGASPH GKG P L AG W ++L+ QP QSPDL+INDLG F SLK RVW ++D LV
Sbjct: 271 YKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: UPI000B8AB67D (uncharacterized protein LOC110800636 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AB67D) HSP 1 Score: 76.6 bits (187), Expect = 3.580e-14 Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 19 DVFLPILNEKMPWL--KEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIY 297
D LP + K PW K++++ QD + PH+ L A +E +NI+LI QPPQSPDL++ DLGFF +++S ++ R ++ALV+AVK Y
Sbjct: 375 DELLPAIRSKWPWFASKDILIQQDNSRPHINPNDAEFLDAATQEG-FNIQLICQPPQSPDLNVLDLGFFRAIQSLQHQKFPRDVEALVKAVKEAY 468
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: A0A329SNK0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SNK0_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 9.980e-14 Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = 1
Query: 1 YQEWYTDVFLPILNEKMPW---LKEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIY 297
Y+ + + +P + K P + + + QD A+PH+ P + AG D+WNI+L+ QPP S DL++ DLGFF S++ +R++ R ++ L+ AV +
Sbjct: 25 YKHYIIEEVIPAIKAKWPASERARTIFIQQDNATPHVPVSEPD-VVAAGTSDDWNIRLLFQPPNSSDLNVLDLGFFASIQCIQYRQQTRDIENLIRAVTEAF 125
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: A0A2P4X320_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X320_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 9.950e-13 Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 1
Query: 1 YQEWYTDVFLPILNEKMP----WLKEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIY 297
Y+ + D +P P W + +++ QD A PH+ P + AG E EWNI+L+ QPP SPD++ DLG F SL+ + RE ++ +E+VKS Y
Sbjct: 257 YKTFLLDDVIPATKANWPRREKW-RPILIQQDNAKPHLSPFDPD-IVAAGTEGEWNIRLLFQPPNSPDMNCLDLGLFASLQVKQHREVVTGIEGKIESVKSAY 357
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: A0A484KLW2_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KLW2_9ASTE) HSP 1 Score: 72.0 bits (175), Expect = 1.550e-12 Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 28 LPILNEKMPW-LKEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIY 297
LP + EK P + ++V QD A PH+ P ++ A +ED WNI+L QPP SPDL++ DLGFF + S + R+L L++AV + Y
Sbjct: 615 LPAIKEKWPGPSRNIIVQQDNAKPHVDGSDPDLIEAA-QEDNWNIQLKFQPPNSPDLNVLDLGFFRFIDSLQDQTAARSLTKLIQAVTTAY 704
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: A0A484KH84_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KH84_9ASTE) HSP 1 Score: 71.6 bits (174), Expect = 2.050e-12 Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 1
Query: 28 LPILNEKMPW-LKEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIY 297
LP + EK P + ++V QD A PH+ P L A +ED WNI+L QPP S DL++ DLGFF S+ S + R+L L++AV + Y
Sbjct: 317 LPAIKEKWPGPSRNIIVQQDNAKPHVDGSDPD-LMEAAQEDNWNIQLKFQPPNSSDLNVLDLGFFRSIDSLQDQTAARSLTELIQAVTTAY 406
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: UPI00053F2A94 (uncharacterized protein LOC104896197 n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F2A94) HSP 1 Score: 69.3 bits (168), Expect = 1.310e-11 Identity = 35/94 (37.23%), Postives = 57/94 (60.64%), Query Frame = 1
Query: 28 LPILNEKMP--WLKEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIYGR 303
LP + K P K++ + QD A PH+ +G K A ++ +NI LI QPPQSPDL++ DLGFF ++++ +++ + +D L+ V+ Y R
Sbjct: 319 LPSIMSKWPAGMSKDICIQQDNARPHI-QGNDEAFKAAATQNGFNIMLIQQPPQSPDLNVLDLGFFRAIQALMYQTFPKNIDELITNVQDAYDR 411
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: UPI000B8A8D67 (uncharacterized protein LOC110790078 n=2 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A8D67) HSP 1 Score: 68.2 bits (165), Expect = 2.270e-11 Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1
Query: 19 DVFLPILNEKMPW--LKEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIYG 300
D LP + K P KE+ + QD A PH+ + K A +D +NI+LI QP QSPD+++ DLGFF +++ ++E +++D L++ VK Y
Sbjct: 125 DEMLPAIRSKWPLGACKEIWIQQDNARPHI-HAEDTQFKEAATKDGFNIRLINQPAQSPDMNVLDLGFFRTIQLIQYKEFPKSVDELIKEVKDAYN 219
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: UPI00053F54E0 (uncharacterized protein LOC104893356 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F54E0) HSP 1 Score: 68.6 bits (166), Expect = 2.400e-11 Identity = 35/94 (37.23%), Postives = 57/94 (60.64%), Query Frame = 1
Query: 28 LPILNEKMP--WLKEVVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIYGR 303
LP + K P K++ + QD A PH+ +G K A ++ +NI LI QPPQSPDL++ DLGFF ++++ +++ + +D L+ V+ Y R
Sbjct: 304 LPSIMSKWPAGLSKDIFIQQDNARPHI-QGNNEAFKAAATQNGFNIMLIQQPPQSPDLNVLDLGFFRAIQALMYQTFPKNIDELITNVQDAYDR 396
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Match: A0A225UMU9_9STRA (Mar9 Transposase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UMU9_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 2.660e-11 Identity = 34/103 (33.01%), Postives = 57/103 (55.34%), Query Frame = 1
Query: 1 YQEWYTDVFLPILNEKMPWLKE---VVVHQDGASPHMGKGMPRKLKLAGREDEWNIKLIMQPPQSPDLHINDLGFFVSLKSRVWRERYRTLDALVEAVKSIYG 300
Y+ + + +P + K P ++ +++ QD A+ H P + AGRED+WNI+L QPP SPD + DLG+F S+++ ++ LD L+ A + Y
Sbjct: 36 YKRYLLENGIPAIKAKSPITEKCMPIIIQQDNATHHCKPDDPD-IAAAGREDDWNIQLDFQPPNSPDCNTLDLGYFTSIQALQYQADCYNLDQLIYAENTSYA 137 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4796.11871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4796.11871.1 >prot_H-paniculata_contig4796.11871.1 ID=prot_H-paniculata_contig4796.11871.1|Name=mRNA_H-paniculata_contig4796.11871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp YQEWYTDVFLPILNEKMPWLKEVVVHQDGASPHMGKGMPRKLKLAGREDEback to top mRNA from alignment at H-paniculata_contig4796:8217..8522+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4796.11871.1 ID=mRNA_H-paniculata_contig4796.11871.1|Name=mRNA_H-paniculata_contig4796.11871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig4796:8217..8522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4796:8217..8522+ >mRNA_H-paniculata_contig4796.11871.1 ID=mRNA_H-paniculata_contig4796.11871.1|Name=mRNA_H-paniculata_contig4796.11871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig4796:8217..8522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |