mRNA_H-paniculata_contig11849.1187.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11849.1187.1
Unique NamemRNA_H-paniculata_contig11849.1187.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11849.1187.1 vs. uniprot
Match: D8LTS9_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS9_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.210e-11
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 RVHYYPMVVYLTKNKLAQVALGNCGLMLTLVLGRLIRTIFLGQLRDIEVEV 153
            RV YYP VV+LT NKLAQ ALGN  +++ + +GRL+  +FLG LRDIE+EV
Sbjct:   25 RVEYYPTVVFLTTNKLAQAALGNWAIVMAIGMGRLVSMLFLGPLRDIEIEV 75          
BLAST of mRNA_H-paniculata_contig11849.1187.1 vs. uniprot
Match: A0A4D9CLU7_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLU7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.110e-10
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 RVHYYPMVVYLTKNKLAQVALGNCGLMLTLVLGRLIRTIFLGQLRDIEVEV 153
            RV +YP V+YL  +K + + LGN GLMLTL++GR ++TIF G+LRD+EVE+
Sbjct:   28 RVQFYPAVIYLVTSKPSVLVLGNMGLMLTLLVGRTLKTIFFGRLRDVEVEL 78          
BLAST of mRNA_H-paniculata_contig11849.1187.1 vs. uniprot
Match: K3WJK4_GLOUD (RING-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJK4_GLOUD)

HSP 1 Score: 63.2 bits (152), Expect = 3.930e-10
Identity = 28/51 (54.90%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 RVHYYPMVVYLTKNKLAQVALGNCGLMLTLVLGRLIRTIFLGQLRDIEVEV 153
            R  +YP V+YL  +K++ + LGN GL+LT++LGRL++T+FLG LRD EVE+
Sbjct:   26 RQQFYPAVIYLVTSKISVLILGNAGLVLTMLLGRLVKTLFLGTLRDAEVEL 76          
BLAST of mRNA_H-paniculata_contig11849.1187.1 vs. uniprot
Match: A0A7S0EA23_9EUKA (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EA23_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 6.000e-10
Identity = 27/50 (54.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:    1 RVHYYPMVVYLTKNKLAQVALGNCGLMLTLVLGRLIRTIFLGQLRDIEVE 150
            R  +YP ++YLT NKL+ +ALGN  LMLTL++G+L++ +F G+LR+ EVE
Sbjct:   32 RRQFYPTLIYLTSNKLSLLALGNEALMLTLLVGQLVKALFFGRLREAEVE 81          
BLAST of mRNA_H-paniculata_contig11849.1187.1 vs. uniprot
Match: A0A8K1F9S9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1F9S9_PYTOL)

HSP 1 Score: 62.4 bits (150), Expect = 7.330e-10
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 RVHYYPMVVYLTKNKLAQVALGNCGLMLTLVLGRLIRTIFLGQLRDIEVEV 153
            R  +YP V+YL  +K++ + LGN GL++T++LGRL +TIFLG LRD EVE+
Sbjct:   26 RQQFYPAVIYLVTSKVSVLILGNAGLVVTILLGRLFKTIFLGSLRDAEVEI 76          
BLAST of mRNA_H-paniculata_contig11849.1187.1 vs. uniprot
Match: A0A5D6XXN6_9STRA (Sphingomyelin phosphodiesterase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXN6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.590e-9
Identity = 26/51 (50.98%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 RVHYYPMVVYLTKNKLAQVALGNCGLMLTLVLGRLIRTIFLGQLRDIEVEV 153
            R  +YP V+YL  +K++ + LGN GL+LT++ GRL++++FLG LRD EVE+
Sbjct:   26 RAQFYPAVIYLVTSKVSVLVLGNAGLVLTILFGRLVKSLFLGPLRDAEVEL 76          
BLAST of mRNA_H-paniculata_contig11849.1187.1 vs. uniprot
Match: A0A2P4Y3R8_9STRA (Sphingomyelin phosphodiesterase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3R8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.450e-9
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 RVHYYPMVVYLTKNKLAQVALGNCGLMLTLVLGRLIRTIFLGQLRDIEVEVRRTQETGSI 180
            R  +YP ++YL  +K++ + LGN GL+LT + GRL+++ FLG LRD EVEV   +E   I
Sbjct:  218 RQQFYPSIIYLVTSKVSVLVLGNAGLVLTTLFGRLLKSFFLGTLRDAEVEVVAARECPEI 277          
BLAST of mRNA_H-paniculata_contig11849.1187.1 vs. uniprot
Match: A0A2D4C243_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C243_PYTIN)

HSP 1 Score: 60.5 bits (145), Expect = 3.500e-9
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 RVHYYPMVVYLTKNKLAQVALGNCGLMLTLVLGRLIRTIFLGQLRDIEVEV 153
            R  +YP V+YL  +K++ + LGN  L+LT++ GRL++T+FLG LRD EVE+
Sbjct:   27 RQQFYPSVIYLVTSKISVLILGNAALVLTMLFGRLVKTVFLGTLRDAEVEI 77          
BLAST of mRNA_H-paniculata_contig11849.1187.1 vs. uniprot
Match: A0A484EAA8_BRELC (RING-type domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EAA8_BRELC)

HSP 1 Score: 60.5 bits (145), Expect = 3.500e-9
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 RVHYYPMVVYLTKNKLAQVALGNCGLMLTLVLGRLIRTIFLGQLRDIEVEV 153
            R  +YP ++YL  +K++ + LGN GL+LT + GRL++T+FLG LRD EVE+
Sbjct:   25 RQQFYPSIIYLVTSKISLLVLGNAGLVLTALFGRLVKTLFLGPLRDAEVEL 75          
BLAST of mRNA_H-paniculata_contig11849.1187.1 vs. uniprot
Match: H3GIV4_PHYRM (RING-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GIV4_PHYRM)

HSP 1 Score: 59.3 bits (142), Expect = 8.960e-9
Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 RVHYYPMVVYLTKNKLAQVALGNCGLMLTLVLGRLIRTIFLGQLRDIEVEV 153
            R  +YP V+YL  +K++ + LGN GL+LT + GRL++T FLG LRD EVE+
Sbjct:   25 RQQFYPSVIYLVTSKVSVLVLGNAGLVLTTLFGRLLKTFFLGTLRDAEVEL 75          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11849.1187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTS9_ECTSI3.210e-1160.78RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A4D9CLU7_9STRA2.110e-1056.86RING-type domain-containing protein n=2 Tax=Monodo... [more]
K3WJK4_GLOUD3.930e-1054.90RING-type domain-containing protein n=1 Tax=Globis... [more]
A0A7S0EA23_9EUKA6.000e-1054.00RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A8K1F9S9_PYTOL7.330e-1054.90Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XXN6_9STRA2.590e-950.98Sphingomyelin phosphodiesterase n=1 Tax=Pythium br... [more]
A0A2P4Y3R8_9STRA3.450e-946.67Sphingomyelin phosphodiesterase (Fragment) n=1 Tax... [more]
A0A2D4C243_PYTIN3.500e-950.98Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A484EAA8_BRELC3.500e-950.98RING-type domain-containing protein n=1 Tax=Bremia... [more]
H3GIV4_PHYRM8.960e-952.94RING-type domain-containing protein n=1 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11849contigH-paniculata_contig11849:7704..7886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size183
Cds size165
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928895.5687358-UTR-H-paniculata_contig11849:7703..77211622928895.5687358-UTR-H-paniculata_contig11849:7703..7721Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11849 7704..7721 +
1691480659.942396-UTR-H-paniculata_contig11849:7703..77211691480659.942396-UTR-H-paniculata_contig11849:7703..7721Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11849 7704..7721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928895.580909-CDS-H-paniculata_contig11849:7721..78861622928895.580909-CDS-H-paniculata_contig11849:7721..7886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11849 7722..7886 +
1691480659.9541373-CDS-H-paniculata_contig11849:7721..78861691480659.9541373-CDS-H-paniculata_contig11849:7721..7886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11849 7722..7886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11849.1187.1prot_H-paniculata_contig11849.1187.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11849 7722..7886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11849.1187.1

>prot_H-paniculata_contig11849.1187.1 ID=prot_H-paniculata_contig11849.1187.1|Name=mRNA_H-paniculata_contig11849.1187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MVVYLTKNKLAQVALGNCGLMLTLVLGRLIRTIFLGQLRDIEVEVRRTQE
TGSI*
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mRNA from alignment at H-paniculata_contig11849:7704..7886+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11849.1187.1 ID=mRNA_H-paniculata_contig11849.1187.1|Name=mRNA_H-paniculata_contig11849.1187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig11849:7704..7886+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGTTCATTACTACCCCATGGTGGTATACCTCACGAAGAACAAGCTTGC CCAGGTCGCGCTCGGGAACTGCGGGCTAATGTTGACCCTTGTCCTTGGGA GACTGATTCGCACGATCTTCCTGGGGCAGCTGAGAGATATAGAGGTGGAG GTGAGAAGAACTCAAGAGACAGGGAGTATTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11849:7704..7886+

>mRNA_H-paniculata_contig11849.1187.1 ID=mRNA_H-paniculata_contig11849.1187.1|Name=mRNA_H-paniculata_contig11849.1187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig11849:7704..7886+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGTATACCTCACGAAGAACAAGCTTGCCCAGGTCGCGCTCGGGAA
CTGCGGGCTAATGTTGACCCTTGTCCTTGGGAGACTGATTCGCACGATCT
TCCTGGGGCAGCTGAGAGATATAGAGGTGGAGGTGAGAAGAACTCAAGAG
ACAGGGAGTATTTAGATGGTGGTATACCTCACGAAGAACAAGCTTGCCCA
GGTCGCGCTCGGGAACTGCGGGCTAATGTTGACCCTTGTCCTTGGGAGAC
TGATTCGCACGATCTTCCTGGGGCAGCTGAGAGATATAGAGGTGGAGGTG
AGAAGAACTCAAGAGACAGGGAGTATTTAG
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