mRNA_H-paniculata_contig47848.11850.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47848.11850.1
Unique NamemRNA_H-paniculata_contig47848.11850.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47848.11850.1 vs. uniprot
Match: A0A0J7K416_LASNI (Lectin receptor kinase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K416_LASNI)

HSP 1 Score: 87.0 bits (214), Expect = 1.660e-18
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 WHEAVRVELEGLESLKAWTYVDSVGKGSSVVSARWVFAWKIDEQGNVTKPKARLVARGFSQQHNVDFLEVFAPTVAASSVK 243
            W EA+  EL+ +E    WT V ++ KG   +SA+W+F  K+DE+GNV + KARLVARG+SQ+  +D+ E FAP V   +V+
Sbjct:  189 WKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAPVVRYETVR 269          
BLAST of mRNA_H-paniculata_contig47848.11850.1 vs. uniprot
Match: A0A0J7KM48_LASNI (Integrase catalytic domain-containing protein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KM48_LASNI)

HSP 1 Score: 87.0 bits (214), Expect = 3.740e-18
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 WHEAVRVELEGLESLKAWTYVDSVGKGSSVVSARWVFAWKIDEQGNVTKPKARLVARGFSQQHNVDFLEVFAPTVAASSVK 243
            W EA+  EL+ +E    WT V ++ KG   +SA+W+F  K+DE+GNV + KARLVARG+SQ+  +D+ E FAP V   +V+
Sbjct:  564 WKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAPVVRYETVR 644          
BLAST of mRNA_H-paniculata_contig47848.11850.1 vs. uniprot
Match: A0A5C3EBA0_9BASI (Related to Retrotransposon protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EBA0_9BASI)

HSP 1 Score: 81.6 bits (200), Expect = 2.980e-16
Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 WHEAVRVELEGLESLKAWTYVDSVGKGSSVVSARWVFAWKIDEQGNVTKPKARLVARGFSQQHNVDFLEVFAPTVAASSVKM 246
            W EA++VEL+ L++   WT VD +      ++A+WVF  K D  GNV+K KARLVARGF+Q H +D+ + + P V+ +S+++
Sbjct:  878 WEEAIKVELDSLDNTGTWTIVD-LPAARKAITAKWVFKTKQDADGNVSKYKARLVARGFTQMHGIDYHDTYLPVVSMTSLRL 958          
BLAST of mRNA_H-paniculata_contig47848.11850.1 vs. uniprot
Match: A0A6G0X235_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X235_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.390e-15
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 WHEAVRVELEGLESLKAWTYVDSVGKGSSVVSARWVFAWKIDEQGNVTKPKARLVARGFSQQHNVDFLEVFAPTVAASSVKM 246
            W EA++VE++ L     W  VD + + ++VVS +WVF  K D +G+V K KARLVARGFSQQ+ VD+ E ++P +   SV++
Sbjct:   33 WREAMQVEIDNLIENGTWQLVD-LPRDTNVVSNKWVFKVKYDSKGDVEKFKARLVARGFSQQYGVDYTETYSPVIKQQSVRL 113          
BLAST of mRNA_H-paniculata_contig47848.11850.1 vs. uniprot
Match: A0A6V7KC28_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7KC28_9HYME)

HSP 1 Score: 77.4 bits (189), Expect = 9.200e-15
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 WHEAVRVELEGLESLKAWTYVDSVGKGSSVVSARWVFAWKIDEQGNVTKPKARLVARGFSQQHNVDFLEVFAPTVAASSVK 243
            W +A+++E++ L + K WT V     G ++V  +WVF  K DE GN+ K KARLVARGFSQ++  D+ E FAP    +S +
Sbjct:  815 WEDAIKMEIDSLITNKTWTLVPRPN-GKNIVDCKWVFTIKTDEHGNLAKYKARLVARGFSQEYLADYNETFAPVARIASFR 894          
BLAST of mRNA_H-paniculata_contig47848.11850.1 vs. uniprot
Match: UPI001A562A11 (uncharacterized protein n=3 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A562A11)

HSP 1 Score: 76.3 bits (186), Expect = 2.280e-14
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 WHEAVRVELEGLESLKAWTYVDSVGKGSSVVSARWVFAWKIDEQGNVTKPKARLVARGFSQQHNVDFLEVFAPTVAASSVK 243
            W EA+R EL+GLE++  W  VD + KG++ V   WV   K D    +TK KARLVARGF+Q+  +D+ EVFAP     S++
Sbjct:   45 WEEAMRKELDGLEAMGTWEIVD-LPKGANTVDTCWVLKIKTDANLVLTKFKARLVARGFTQREGIDYTEVFAPVAPIQSIR 124          
BLAST of mRNA_H-paniculata_contig47848.11850.1 vs. uniprot
Match: A0A535F797_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F797_9CHLR)

HSP 1 Score: 76.3 bits (186), Expect = 2.340e-14
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    1 WHEAVRVELEGLESLKAWTYVDSVGKGSSVVSARWVFAWKIDEQGNVTKPKARLVARGFSQQHNVDFLEVFAPTVAASSVKM 246
            W  A+  EL+ + +   W  VD+  KG ++VS++WVF  K    G + + KARLVARGFSQQH +D+ E FAP V   S+++
Sbjct:  830 WSAAINEELQSIATNTVWELVDTP-KGVNIVSSKWVFKLKCLPDGRIDRYKARLVARGFSQQHGIDYYETFAPVVRLESLRI 910          
BLAST of mRNA_H-paniculata_contig47848.11850.1 vs. uniprot
Match: A0A2N5TEG0_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5TEG0_9BASI)

HSP 1 Score: 76.3 bits (186), Expect = 2.340e-14
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    1 WHEAVRVELEGLESLKAWTYVDSVGKGSSVVSARWVFAWKIDEQGNVTKPKARLVARGFSQQHNVDFLEVFAPTVAASSVKM 246
            W  A+  EL  +E LK W+  D+ GK    ++  WVF  K D+ GN+TK KAR   RGF+Q+  +D+ +VF+PT   +S+++
Sbjct:  883 WESAISNELGNMEQLKVWSVADTAGKDIHPLTTTWVFKKKTDQDGNLTKYKARSCVRGFNQREGIDYQDVFSPTGCLTSLRI 964          
BLAST of mRNA_H-paniculata_contig47848.11850.1 vs. uniprot
Match: UPI000738109D (uncharacterized protein LOC107037352 n=1 Tax=Diachasma alloeum TaxID=454923 RepID=UPI000738109D)

HSP 1 Score: 71.6 bits (174), Expect = 3.090e-14
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    1 WHEAVRVELEGLESLKAWTYVDSVGKGSSVVSARWVFAWKIDEQGNVTKPKARLVARGFSQQHNVDFLEVFAPTVAASSVK 243
            W  A+  E++ LE  + W  ++ V KG   + ++WVF  K    G   + KARLVA+GFSQ++ +D+ EVFAP V AS+V+
Sbjct:   34 WERAIAEEIQSLEDNETWD-LEPVPKGKVPIGSKWVFRTKTTPDGGPARHKARLVAQGFSQKYGIDYDEVFAPVVKASTVR 113          
BLAST of mRNA_H-paniculata_contig47848.11850.1 vs. uniprot
Match: A0A2N5TN99_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5TN99_9BASI)

HSP 1 Score: 75.9 bits (185), Expect = 3.190e-14
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    1 WHEAVRVELEGLESLKAWTYVDSVGKGSSVVSARWVFAWKIDEQGNVTKPKARLVARGFSQQHNVDFLEVFAPTVAASSVKM 246
            W  A+  EL  +  LK W+  D  GKG   ++  WVF  K D+ GN+TK KARL  RGF+Q+  +D+ +VF+PT   +S+++
Sbjct:  667 WEGAISNELGNMNRLKVWSVADISGKGIRPLTTTWVFKKKTDQDGNLTKYKARLCVRGFNQREGIDYQDVFSPTGRLTSLRI 748          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47848.11850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7K416_LASNI1.660e-1846.91Lectin receptor kinase n=1 Tax=Lasius niger TaxID=... [more]
A0A0J7KM48_LASNI3.740e-1846.91Integrase catalytic domain-containing protein n=2 ... [more]
A0A5C3EBA0_9BASI2.980e-1643.90Related to Retrotransposon protein n=1 Tax=Ustilag... [more]
A0A6G0X235_9STRA3.390e-1546.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6V7KC28_9HYME9.200e-1544.44Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]
UPI001A562A112.280e-1446.91uncharacterized protein n=3 Tax=Ustilago hordei Ta... [more]
A0A535F797_9CHLR2.340e-1443.90DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A2N5TEG0_9BASI2.340e-1440.24Integrase catalytic domain-containing protein n=1 ... [more]
UPI000738109D3.090e-1441.98uncharacterized protein LOC107037352 n=1 Tax=Diach... [more]
A0A2N5TN99_9BASI3.190e-1441.46Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47848contigH-paniculata_contig47848:21..266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score75.1
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog5270.UM01393P0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Retrotransposon gag protein
EggNOG OGs38DPC@33154,3NUZ7@4751,3V2N5@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930418.2549682-CDS-H-paniculata_contig47848:20..2661622930418.2549682-CDS-H-paniculata_contig47848:20..266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47848 21..266 -
1691481283.087578-CDS-H-paniculata_contig47848:20..2661691481283.087578-CDS-H-paniculata_contig47848:20..266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47848 21..266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47848.11850.1prot_H-paniculata_contig47848.11850.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47848 21..266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47848.11850.1

>prot_H-paniculata_contig47848.11850.1 ID=prot_H-paniculata_contig47848.11850.1|Name=mRNA_H-paniculata_contig47848.11850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
WHEAVRVELEGLESLKAWTYVDSVGKGSSVVSARWVFAWKIDEQGNVTKP
KARLVARGFSQQHNVDFLEVFAPTVAASSVKM
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mRNA from alignment at H-paniculata_contig47848:21..266-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47848.11850.1 ID=mRNA_H-paniculata_contig47848.11850.1|Name=mRNA_H-paniculata_contig47848.11850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at H-paniculata_contig47848:21..266- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCATGAGGCAGTCAGAGTAGAGCTTGAGGGCTTGGAAAGTCTCAAAGC TTGGACTTATGTAGACAGTGTGGGGAAAGGTTCCAGTGTTGTCAGTGCGA GATGGGTATTTGCATGGAAAATTGATGAGCAGGGGAACGTTACAAAGCCA AAGGCAAGGCTTGTAGCTCGAGGGTTTAGCCAGCAACACAACGTTGATTT TCTCGAAGTGTTTGCTCCTACGGTAGCCGCTTCCAGTGTGAAGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig47848:21..266-

>mRNA_H-paniculata_contig47848.11850.1 ID=mRNA_H-paniculata_contig47848.11850.1|Name=mRNA_H-paniculata_contig47848.11850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig47848:21..266- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCATGAGGCAGTCAGAGTAGAGCTTGAGGGCTTGGAAAGTCTCAAAGC
TTGGACTTATGTAGACAGTGTGGGGAAAGGTTCCAGTGTTGTCAGTGCGA
GATGGGTATTTGCATGGAAAATTGATGAGCAGGGGAACGTTACAAAGCCA
AAGGCAAGGCTTGTAGCTCGAGGGTTTAGCCAGCAACACAACGTTGATTT
TCTCGAAGTGTTTGCTCCTACGGTAGCCGCTTCCAGTGTGAAGATGTGGC
ATGAGGCAGTCAGAGTAGAGCTTGAGGGCTTGGAAAGTCTCAAAGCTTGG
ACTTATGTAGACAGTGTGGGGAAAGGTTCCAGTGTTGTCAGTGCGAGATG
GGTATTTGCATGGAAAATTGATGAGCAGGGGAACGTTACAAAGCCAAAGG
CAAGGCTTGTAGCTCGAGGGTTTAGCCAGCAACACAACGTTGATTTTCTC
GAAGTGTTTGCTCCTACGGTAGCCGCTTCCAGTGTGAAGATG
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