mRNA_H-paniculata_contig1184.1181.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1184.1181.1
Unique NamemRNA_H-paniculata_contig1184.1181.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1184.1181.1 vs. uniprot
Match: D7FNK9_ECTSI (YCII-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK9_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 6.690e-64
Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = 1 
Query:  175 KHLYSIHCMDDQSCGRVGGEPRGGSTKRMNNYPAHKEYQGATANPEDPRYIKKVCAGPMVEEDDKYMVGSFFLVEATREEAQKFVDNDPFNKESVWQTISVQRYVSVVGVKAHDGNL 525
            KHLY+IHC+DDQSCG+  GEPRGGS KRM NYPAHKEYQ ATANPEDPR+I KV AGP+V+E D YM+GSFFLV ATREEAQKFVDNDPF KE VW TIS++RYVSVVGVK H GNL
Sbjct:    5 KHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDDYMIGSFFLVAATREEAQKFVDNDPFKKEGVWSTISLERYVSVVGVKPHSGNL 121
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BLAST of mRNA_H-paniculata_contig1184.1181.1 vs. uniprot
Match: A0A835Z4J4_9STRA (YCII-related n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J4_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.940e-34
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 1 
Query:  175 KHLYSIHCMDDQSCGRVG--GEPRGGSTKRMNNYPAHKEYQGATANPEDPRYIKKVCAGPMVEEDDKYMVGSFFLVEATREEAQKFVDNDPFNKESVWQTISVQRYVSVVGVKA 510
            K LY I C+DDQSCG      EPR GS KR+  Y  HK YQ +TA+P+ P +I K+ AGPMV +D KYMVGS F+VE TRE+ + F  NDPF K  VW +I+ ++Y SV G++A
Sbjct:    4 KRLYVITCVDDQSCGPADPPAEPRSGSAKRIGIYAEHKAYQASTADPDSPNFITKITAGPMVTDDGKYMVGSSFIVEGTREQVEAFYKNDPFYKAGVWASITCEQYFSVQGIQA 117
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BLAST of mRNA_H-paniculata_contig1184.1181.1 vs. uniprot
Match: A0A7S2V359_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V359_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.470e-33
Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 1 
Query:  175 KHLYSIHCMDDQSCGRVGGEPRGGSTKRMNNYPAHKEYQGATANPEDPRYIKKVCAGPMVEEDDKYMVGSFFLVEATREEAQKFVDNDPFNKESVWQTISVQRYVSV-VGVKAHDG 519
            K L+ IHC+DD S     GE  GGS KRM  Y  HK YQGATANPE+P YI+K+ AGP++ ++  +M+GS F+VE+T+EEA  F +NDPF K  VW+++++ RYVS+  G+ AH G
Sbjct:   50 KQLWLIHCVDDDSSPLEDGETFGGSGKRMAVYAEHKVYQGATANPENPEYIRKLAAGPLLTDEGTHMIGSTFIVESTKEEAIAFNENDPFAKAGVWKSVNISRYVSIPAGLIAHAG 165
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BLAST of mRNA_H-paniculata_contig1184.1181.1 vs. uniprot
Match: UPI0004D00C7F (YciI family protein n=1 Tax=Caballeronia sordidicola TaxID=196367 RepID=UPI0004D00C7F)

HSP 1 Score: 60.8 bits (146), Expect = 4.070e-9
Identity = 37/106 (34.91%), Postives = 56/106 (52.83%), Query Frame = 1 
Query:  184 YSIHCMDDQSCGRVGGEPRGGSTKRMNNYPAHKEYQGATANPEDPRYIKKVCAGPMVEEDDKYMVGSFFLVEATREEA-QKFVDNDPFNKESVWQTISVQRYVSVV 498
            Y ++C+D    G V          R+ +Y AHK Y            +K + +GP+V +DDK M+GSFFL E+   EA + F   DPFNK  +W+T+ V+ ++  V
Sbjct:    3 YIVYCLDHD--GMVD--------TRLAHYDAHKAYLATLP-------VKTLISGPLVADDDKTMIGSFFLYESESIEAVRNFAKEDPFNKVGIWKTMEVRPFLKRV 91
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BLAST of mRNA_H-paniculata_contig1184.1181.1 vs. uniprot
Match: UPI0003669DA7 (YciI family protein n=1 Tax=Cupriavidus sp. UYPR2.512 TaxID=1080187 RepID=UPI0003669DA7)

HSP 1 Score: 57.0 bits (136), Expect = 1.190e-7
Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:  190 IHCMDDQSCGRVGGEPRGGSTKRMNNYPAHKEYQGATANPEDPRYIKKVCAGPMVEEDDKYMVGSFFLVE-ATREEAQKFVDNDPFNKESVWQTISVQRYV 489
            +HC+D  + G    + R  S    N++ AH   QGA          K + AGP+V+ +D+ ++GSFFL E AT E+ + F+ NDP NK  VW+++ V+  V
Sbjct:    5 VHCLDHPNVG----DRRQAS---QNDHRAH--LQGAPG--------KLLVAGPLVQGEDQAVIGSFFLYEDATAEQVESFLRNDPLNKAGVWKSVEVRELV 88
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BLAST of mRNA_H-paniculata_contig1184.1181.1 vs. uniprot
Match: A0A2E6U228_9HYPH (YCII domain-containing protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E6U228_9HYPH)

HSP 1 Score: 52.0 bits (123), Expect = 9.990e-6
Identity = 21/55 (38.18%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:  340 AGPMVEEDDKYMVGSFFLVE-ATREEAQKFVDNDPFNKESVWQTISVQRYVSVVG 501
            AGP + +D   M+G+  +++ ATR+EAQ F DNDP+NK  +++ + ++R+  ++G
Sbjct:   36 AGPFISDDGDTMIGTLLVLDVATRQEAQAFADNDPYNKAGLFEAVEIRRWNHLIG 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1184.1181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FNK9_ECTSI6.690e-6479.49YCII-related n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A835Z4J4_9STRA2.940e-3453.51YCII-related n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2V359_9STRA1.470e-3352.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI0004D00C7F4.070e-934.91YciI family protein n=1 Tax=Caballeronia sordidico... [more]
UPI0003669DA71.190e-736.63YciI family protein n=1 Tax=Cupriavidus sp. UYPR2.... [more]
A0A2E6U228_9HYPH9.990e-638.18YCII domain-containing protein n=1 Tax=Rhodobiacea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1184contigH-paniculata_contig1184:24622..26151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.2
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog1122214.AQWH01000008_gene1548
KEGG koko:K09780
Hectar predicted targeting categoryother localisation
EggNOG free text desc.YCII-related domain
EggNOG OGsCOG2350@1,COG2350@2
Ec32 ortholog descriptionDimeric alpha-beta barrel
Ec32 orthologEc-01_005090.1
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons3
Model size528
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1184.1181.1prot_H-paniculata_contig1184.1181.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1184 24718..26151 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.8111749-UTR-H-paniculata_contig1184:24621..247171622928894.8111749-UTR-H-paniculata_contig1184:24621..24717Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1184 24622..24717 +
1691480659.661524-UTR-H-paniculata_contig1184:24621..247171691480659.661524-UTR-H-paniculata_contig1184:24621..24717Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1184 24622..24717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.8263206-CDS-H-paniculata_contig1184:24717..249031622928894.8263206-CDS-H-paniculata_contig1184:24717..24903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1184 24718..24903 +
1691480659.6729853-CDS-H-paniculata_contig1184:24717..249031691480659.6729853-CDS-H-paniculata_contig1184:24717..24903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1184 24718..24903 +
1622928894.8398392-CDS-H-paniculata_contig1184:25442..256101622928894.8398392-CDS-H-paniculata_contig1184:25442..25610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1184 25443..25610 +
1691480659.6815672-CDS-H-paniculata_contig1184:25442..256101691480659.6815672-CDS-H-paniculata_contig1184:25442..25610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1184 25443..25610 +
1622928894.8597767-CDS-H-paniculata_contig1184:26073..261511622928894.8597767-CDS-H-paniculata_contig1184:26073..26151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1184 26074..26151 +
1691480659.6929073-CDS-H-paniculata_contig1184:26073..261511691480659.6929073-CDS-H-paniculata_contig1184:26073..26151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1184 26074..26151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1184.1181.1

>prot_H-paniculata_contig1184.1181.1 ID=prot_H-paniculata_contig1184.1181.1|Name=mRNA_H-paniculata_contig1184.1181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
MSSPPPPGLFRAFCQSLDISLFFVPAKHLYSIHCMDDQSCGRVGGEPRGG
STKRMNNYPAHKEYQGATANPEDPRYIKKVCAGPMVEEDDKYMVGSFFLV
EATREEAQKFVDNDPFNKESVWQTISVQRYVSVVGVKAHDGNL*
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mRNA from alignment at H-paniculata_contig1184:24622..26151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1184.1181.1 ID=mRNA_H-paniculata_contig1184.1181.1|Name=mRNA_H-paniculata_contig1184.1181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1530bp|location=Sequence derived from alignment at H-paniculata_contig1184:24622..26151+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGCTCCGTCATTACTTGCGTCTTGAACTCTACCGTCGAGGACTTCACC
ATCATATCGTGCTTTACAAGCACGTGCTCGAGTACGGGTTGTATTAATGT
CGTCGCCGCCACCTCCTGGACTGTTTCGTGCCTTTTGTCAATCTTTGGAC
ATCTCGTTATTTTTTGTTCCAGCTAAGCACTTGTACTCGATACACTGCAT
GGACGACCAGTCCTGCGGGCGAGTGGGAGGAGAGCCGCGGGGAGGGTCGA
CAAAACGCATGAACAACTACCCTGCACACAAGGTGAATGACAAATATGTC
AATGTACTTATCTGTAGGTGCCAACTTCACACATTTCTCAAGTAAAGAAA
CCGAGCCGCGATTGGTCGTAATTCAGACAATTGACCAACTGGGGAGGACG
AGAACAAATACTGTCAGTGGACTGGCACTGTATTCAGTTCGTGCTCATAT
GCCTTTGGAATGTGATAACCCGCCTATTATGACGTGCAGCAAGTTTTTTA
TAGTGATCAAACATTCTGTCCAGCCCGCCTGGGAAGATGACACTTAGTGA
TGAATGTGTTGGGTAACGTTGTCAATAACAAGAGAGTGGAACCCTTCGCT
TTTAATATGTGAATGCCCACTATCATGGAAGTCACTTGTCGCGCATATTC
TCCCCGGTGTTGATCTAAGTGAGCCCTGTAATGTGTATAATACGGCACTG
TTATCAATTTTACTTTTGCTAAAGATAGAAGACATGCCACCACAATATAT
TCCATGATTATGTGATGTGACATGATCAGAGCCCTGTACCTTAACCCATA
TATCCCTGGTCAAACCCCCAGGAGTATCAGGGTGCTACTGCCAACCCTGA
AGACCCGCGATACATCAAAAAGGTCTGCGCTGGACCGATGGTAGAGGAGG
ATGACAAGTACATGGTAGGTAGCTTCTTTCTGGTTGAAGCTACGCGTGAG
GAGGCCCAAAAGTTCGTAGACAACGACCCATTCAATAAGGTATGTACGAT
GTATCGCTGACGAAGTTTATGTGAATAAAAGTGGAGTGGCCGTGTAGCCC
TTGGCATGCTGTCGGCAACAAGTGGATTGGTCGACCTTCTGCTGTGTCTG
GAAAGTATTGAAGCCTTGCATTTTCACCAAAGGTACATTACCTGGGATGT
ATGCGCGAAGCATGACATAATCAACGGATAATCATTGCGTCGACTTGTTG
GCACGCCATATACAAGTCACAGTGAATGGGGTCTGCTTTCGTGTCTCTCC
ACTGCAGCGTATTGCGCTCAAGCCTGAGGCCAAGTTGTAGCGAATCATTT
TGAATCCACAGAAGTATGATTCAAACCGATGAGATTTTGCAATTTCAACA
CAAGAATATGCAGCTGAAAAGATATTCACCTTGTTCCCTCCCACGTGTTA
CGTAACCGTCTGCTGCCTTGTACCCCCGACTGCTCCCCTGCCACCTCTTC
AGGAAAGTGTGTGGCAAACCATATCGGTCCAACGCTACGTGTCTGTAGTC
GGAGTAAAGGCGCACGACGGCAATTTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1184:24622..26151+

>mRNA_H-paniculata_contig1184.1181.1 ID=mRNA_H-paniculata_contig1184.1181.1|Name=mRNA_H-paniculata_contig1184.1181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig1184:24622..26151+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTCGCCGCCACCTCCTGGACTGTTTCGTGCCTTTTGTCAATCTTT
GGACATCTCGTTATTTTTTGTTCCAGCTAAGCACTTGTACTCGATACACT
GCATGGACGACCAGTCCTGCGGGCGAGTGGGAGGAGAGCCGCGGGGAGGG
TCGACAAAACGCATGAACAACTACCCTGCACACAAGATGTCGTCGCCGCC
ACCTCCTGGACTGTTTCGTGCCTTTTGTCAATCTTTGGACATCTCGTTAT
TTTTTGTTCCAGCTAAGCACTTGTACTCGATACACTGCATGGACGACCAG
TCCTGCGGGCGAGTGGGAGGAGAGCCGCGGGGAGGGTCGACAAAACGCAT
GAACAACTACCCTGCACACAAGGAGTATCAGGGTGCTACTGCCAACCCTG
AAGACCCGCGATACATCAAAAAGGTCTGCGCTGGACCGATGGTAGAGGAG
GATGACAAGTACATGGTAGGTAGCTTCTTTCTGGTTGAAGCTACGCGTGA
GGAGGCCCAAAAGTTCGTAGACAACGACCCATTCAATAAGGAGTATCAGG
GTGCTACTGCCAACCCTGAAGACCCGCGATACATCAAAAAGGTCTGCGCT
GGACCGATGGTAGAGGAGGATGACAAGTACATGGTAGGTAGCTTCTTTCT
GGTTGAAGCTACGCGTGAGGAGGCCCAAAAGTTCGTAGACAACGACCCAT
TCAATAAGGAAAGTGTGTGGCAAACCATATCGGTCCAACGCTACGTGTCT
GTAGTCGGAGTAAAGGCGCACGACGGCAATTTGTAAGAAAGTGTGTGGCA
AACCATATCGGTCCAACGCTACGTGTCTGTAGTCGGAGTAAAGGCGCACG
ACGGCAATTTGTAA
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