mRNA_H-paniculata_contig47467.11792.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47467.11792.1
Unique NamemRNA_H-paniculata_contig47467.11792.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI)

HSP 1 Score: 94.7 bits (234), Expect = 8.160e-20
Identity = 50/143 (34.97%), Postives = 82/143 (57.34%), Query Frame = 1
Query:   10 WQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW 438
            W RA + E + L++   +  V+ P  K  +S   +YK K  +  +  +YK RLV  G  Q+ G+ F+   SP    +S + ++S+AA++DW++ H+D + AYL   +++EI+V     + E  G V RL +A+Y L QA RCW
Sbjct:  240 WDRAMEEERNSLVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGDR--RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCW 380          
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 94.7 bits (234), Expect = 8.650e-20
Identity = 50/143 (34.97%), Postives = 82/143 (57.34%), Query Frame = 1
Query:   10 WQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW 438
            W RA + E + L++   +  V+ P  K  +S   +YK K  +  +  +YK RLV  G  Q+ G+ F+   SP    +S + ++S+AA++DW++ H+D + AYL   +++EI+V     + E  G V RL +A+Y L QA RCW
Sbjct:  845 WDRAMEEERNSLVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGDR--RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCW 985          
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A5N6PPX5_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PPX5_9ASTR)

HSP 1 Score: 90.9 bits (224), Expect = 1.920e-18
Identity = 51/146 (34.93%), Postives = 76/146 (52.05%), Query Frame = 1
Query:    7 HWQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYRE--FPGAVGRLNEAIYRLVQADRCW 438
            HW  A   E + L +   W  V RP    VV +  +++ K   DG +++YK RLVA G  Q+ G+ +    SP   A + + +LSLA + +W+LR +D   A+L   I + +F+E    +    FP  V  L +AIY L QA R W
Sbjct:  907 HWIEAMNHELNALYKNDTWVLVPRPATHNVVGSKWLFRTKFRADGSIDRYKARLVAQGYSQVPGLDYSHTFSPVVKATTVRVVLSLAVVNNWKLRQLDVNNAFLHGKITERVFMEQPPGFANPHFPNHVCLLKKAIYGLKQAPRAW 1052          
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A2I0IJP3_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IJP3_PUNGR)

HSP 1 Score: 90.1 bits (222), Expect = 1.970e-18
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   10 WQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYR-EFPGAVGRLNEAIYRLVQADRCW 438
            W  A K E   + +  +W  V+ P+  + +    ++KRKIG DGKVE YK RLVA G RQ +G+ +    SP     S + ML++AA  D+E+  +D + A+L V I+++IF++    +  +    V +L  +IY L Q  R W
Sbjct:   91 WLEAMKSEMDSMSKNQVWDLVDPPEGIVPIGNKWVFKRKIGADGKVETYKARLVAKGYRQKQGVDYEETFSPVAMLKSLRIMLAIAAHYDYEVWQMDVKTAFLNVSIEEDIFMDQPKGFESKDKSKVCKLKRSIYGLTQVSRSW 234          
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 90.1 bits (222), Expect = 2.780e-18
Identity = 51/143 (35.66%), Postives = 82/143 (57.34%), Query Frame = 1
Query:   10 WQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW 438
            W+ A   E    ++  L+ +VE PKN+ VV +  +++ K G +GK+EKYK RLVA G  Q+KGI +    +P     S + +LSLAA  D E+  +D + A+L   +D+EI+++    +    G V +L +++Y L QA   W
Sbjct:    9 WKIACAQEMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQASCEW 151          
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 90.1 bits (222), Expect = 3.560e-18
Identity = 52/146 (35.62%), Postives = 81/146 (55.48%), Query Frame = 1
Query:    4 EHWQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYR-EFPGAVGRLNEAIYRLVQADRCW 438
            E W+ A   E + L E   W  V+ PK K VV    I+  K+G DGK+++YK RLVA G  Q  GI +    +P     S + ++SLAA  DW+L  +D + A+L   +++E++++    +  E    V RLN+++Y L Q+ R W
Sbjct:  862 EKWRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGENNDVVCRLNKSLYGLKQSPRAW 1007          
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI)

HSP 1 Score: 89.7 bits (221), Expect = 4.740e-18
Identity = 50/145 (34.48%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    4 EHWQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW 438
            E W+RA + E S LI+   WT+ + P  +  ++  +I+K+K   DGKV +YK RLV  G  Q  GI +    +P     S + + SLAA +D+E+   D + A+L   +D+EIF++   +  +  G V +L +++Y L Q+ R W
Sbjct:  578 EQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAAKEDFEIAQFDIKTAFLNGELDEEIFMQLPTRVTD-AGNVVKLQKSLYGLKQSPRQW 721          
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A2N5UJB8_9BASI (Uncharacterized protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5UJB8_9BASI)

HSP 1 Score: 89.7 bits (221), Expect = 4.910e-18
Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 1
Query:    4 EHWQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW 438
            E W +A  VE + L E  +W   + P +K  ++   ++  K G DG   ++K R VA G  Q+ G+ F A  +P     S + +L++AA   W +   DF  AYL +PID+EI+++        PG   +L +A+Y   QA RCW
Sbjct: 1154 EEWLKAIAVELNNLEEMRVWAVAQLPSDKKALNGRWVFATKPGTDGSNVRFKARFVAKGFTQVAGVDFNATFAPTTTFVSLRLLLTVAAAHRWPVHSFDFVAAYLNLPIDEEIWLKPPEGMDVPPGQALKLEKALYGTRQAARCW 1298          
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A2N5TVF5_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5TVF5_9BASI)

HSP 1 Score: 89.4 bits (220), Expect = 6.570e-18
Identity = 49/145 (33.79%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    4 EHWQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW 438
            E W +A  VE + L E  +W   + P +K  ++   ++  K G DG   ++K R VA G  Q+ G+ F A  +P     S   +L++AA   W +   DF  AYL +PID+EI+++        PG   +L +A+Y   QA RCW
Sbjct:  740 EEWLKAIAVELNNLKEMRVWAVAQLPSDKKALNGRWVFATKPGTDGSNVRFKARFVAKGFTQVAGVDFNATFAPTATFVSLCLLLTVAAAHQWPVHSFDFVAAYLNLPIDEEIWLKPPEGMDVPPGQALKLEKALYSTQQAARCW 884          
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A0C4ENF5_PUCT1 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A0C4ENF5_PUCT1)

HSP 1 Score: 88.6 bits (218), Expect = 1.150e-17
Identity = 48/146 (32.88%), Postives = 77/146 (52.74%), Query Frame = 1
Query:    1 WEHWQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW 438
            W+ W+ A + E S L+   +W+ +  PK +  +    ++  K  D  +V ++K R VA G  QI+G  F    +P     S + + +LAA  +W +R  DF  AYL  PID+E++V+        PG   +L++A+Y   QA RCW
Sbjct:  211 WDKWKFAIEEELSNLLRMKVWSALPCPKGRTPLDGRWVFAEKSNDQSEVVRWKARYVAKGFTQIEGYDFNKTFAPTATFVSMRLLFTLAAKFNWPVRSFDFVAAYLNSPIDEEVWVKAPEGMNLPPGYAMKLHKALYGTKQAARCW 356          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5GI29_9HEMI8.160e-2034.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5GGZ1_9HEMI8.650e-2034.97Integrase catalytic domain-containing protein (Fra... [more]
A0A5N6PPX5_9ASTR1.920e-1834.93Integrase catalytic domain-containing protein n=2 ... [more]
A0A2I0IJP3_PUNGR1.970e-1835.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6NNP3_9APHY2.780e-1835.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151T5R4_CAJCA3.560e-1835.62Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7K690_LASNI4.740e-1834.48Retrovirus-related pol polyprotein from transposon... [more]
A0A2N5UJB8_9BASI4.910e-1833.79Uncharacterized protein n=1 Tax=Puccinia coronata ... [more]
A0A2N5TVF5_9BASI6.570e-1833.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A0C4ENF5_PUCT11.150e-1732.88Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47467contigH-paniculata_contig47467:181..618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score97.8
Seed ortholog evalue4.4e-18
Seed eggNOG ortholog15368.BRADI2G06305.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37V5Q@33090,3GFFK@35493,3IKJW@38820,3M7B5@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930410.2913213-CDS-H-paniculata_contig47467:180..6181622930410.2913213-CDS-H-paniculata_contig47467:180..618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47467 181..618 -
1691481279.2522025-CDS-H-paniculata_contig47467:180..6181691481279.2522025-CDS-H-paniculata_contig47467:180..618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47467 181..618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47467.11792.1prot_H-paniculata_contig47467.11792.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47467 181..618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47467.11792.1

>prot_H-paniculata_contig47467.11792.1 ID=prot_H-paniculata_contig47467.11792.1|Name=mRNA_H-paniculata_contig47467.11792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
WEHWQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVE
KYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVD
FELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW
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mRNA from alignment at H-paniculata_contig47467:181..618-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47467.11792.1 ID=mRNA_H-paniculata_contig47467.11792.1|Name=mRNA_H-paniculata_contig47467.11792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=438bp|location=Sequence derived from alignment at H-paniculata_contig47467:181..618- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGAACACTGGCAAAGAGCGGAGAAAGTCGAGACGTCAGGCCTCATCGA AAAAGGGCTTTGGACGCAAGTGGAGCGCCCGAAGAACAAGCTGGTCGTGA GCACGATGATGATCTACAAAAGGAAAATCGGCGACGACGGAAAAGTGGAG AAATATAAGTGCCGCCTGGTTGCCCACGGGAACCGTCAGATCAAGGGCAT CCGCTTCCGGGCAGCTTCGTCCCCTGCACCCGCAGCGGCCAGCACAAAAA AGATGTTGTCGCTCGCGGCAATCCAGGACTGGGAGCTACGGCACGTCGAT TTTGAATTAGCTTATCTGCAGGTGCCCATCGACCAAGAGATTTTCGTTGA AACTCGCGTAAAATACCGGGAGTTCCCAGGAGCGGTGGGGCGCCTCAACG AGGCCATCTACAGATTAGTGCAAGCGGACAGATGCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig47467:181..618-

>mRNA_H-paniculata_contig47467.11792.1 ID=mRNA_H-paniculata_contig47467.11792.1|Name=mRNA_H-paniculata_contig47467.11792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig47467:181..618- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGAACACTGGCAAAGAGCGGAGAAAGTCGAGACGTCAGGCCTCATCGA
AAAAGGGCTTTGGACGCAAGTGGAGCGCCCGAAGAACAAGCTGGTCGTGA
GCACGATGATGATCTACAAAAGGAAAATCGGCGACGACGGAAAAGTGGAG
AAATATAAGTGCCGCCTGGTTGCCCACGGGAACCGTCAGATCAAGGGCAT
CCGCTTCCGGGCAGCTTCGTCCCCTGCACCCGCAGCGGCCAGCACAAAAA
AGATGTTGTCGCTCGCGGCAATCCAGGACTGGGAGCTACGGCACGTCGAT
TTTGAATTAGCTTATCTGCAGGTGCCCATCGACCAAGAGATTTTCGTTGA
AACTCGCGTAAAATACCGGGAGTTCCCAGGAGCGGTGGGGCGCCTCAACG
AGGCCATCTACAGATTAGTGCAAGCGGACAGATGCTGGTGGGAACACTGG
CAAAGAGCGGAGAAAGTCGAGACGTCAGGCCTCATCGAAAAAGGGCTTTG
GACGCAAGTGGAGCGCCCGAAGAACAAGCTGGTCGTGAGCACGATGATGA
TCTACAAAAGGAAAATCGGCGACGACGGAAAAGTGGAGAAATATAAGTGC
CGCCTGGTTGCCCACGGGAACCGTCAGATCAAGGGCATCCGCTTCCGGGC
AGCTTCGTCCCCTGCACCCGCAGCGGCCAGCACAAAAAAGATGTTGTCGC
TCGCGGCAATCCAGGACTGGGAGCTACGGCACGTCGATTTTGAATTAGCT
TATCTGCAGGTGCCCATCGACCAAGAGATTTTCGTTGAAACTCGCGTAAA
ATACCGGGAGTTCCCAGGAGCGGTGGGGCGCCTCAACGAGGCCATCTACA
GATTAGTGCAAGCGGACAGATGCTGG
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