mRNA_H-paniculata_contig47467.11792.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI) HSP 1 Score: 94.7 bits (234), Expect = 8.160e-20 Identity = 50/143 (34.97%), Postives = 82/143 (57.34%), Query Frame = 1
Query: 10 WQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW 438
W RA + E + L++ + V+ P K +S +YK K + + +YK RLV G Q+ G+ F+ SP +S + ++S+AA++DW++ H+D + AYL +++EI+V + E G V RL +A+Y L QA RCW
Sbjct: 240 WDRAMEEERNSLVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGDR--RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCW 380
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI) HSP 1 Score: 94.7 bits (234), Expect = 8.650e-20 Identity = 50/143 (34.97%), Postives = 82/143 (57.34%), Query Frame = 1
Query: 10 WQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW 438
W RA + E + L++ + V+ P K +S +YK K + + +YK RLV G Q+ G+ F+ SP +S + ++S+AA++DW++ H+D + AYL +++EI+V + E G V RL +A+Y L QA RCW
Sbjct: 845 WDRAMEEERNSLVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGDR--RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCW 985
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A5N6PPX5_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PPX5_9ASTR) HSP 1 Score: 90.9 bits (224), Expect = 1.920e-18 Identity = 51/146 (34.93%), Postives = 76/146 (52.05%), Query Frame = 1
Query: 7 HWQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYRE--FPGAVGRLNEAIYRLVQADRCW 438
HW A E + L + W V RP VV + +++ K DG +++YK RLVA G Q+ G+ + SP A + + +LSLA + +W+LR +D A+L I + +F+E + FP V L +AIY L QA R W
Sbjct: 907 HWIEAMNHELNALYKNDTWVLVPRPATHNVVGSKWLFRTKFRADGSIDRYKARLVAQGYSQVPGLDYSHTFSPVVKATTVRVVLSLAVVNNWKLRQLDVNNAFLHGKITERVFMEQPPGFANPHFPNHVCLLKKAIYGLKQAPRAW 1052
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A2I0IJP3_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IJP3_PUNGR) HSP 1 Score: 90.1 bits (222), Expect = 1.970e-18 Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 10 WQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYR-EFPGAVGRLNEAIYRLVQADRCW 438
W A K E + + +W V+ P+ + + ++KRKIG DGKVE YK RLVA G RQ +G+ + SP S + ML++AA D+E+ +D + A+L V I+++IF++ + + V +L +IY L Q R W
Sbjct: 91 WLEAMKSEMDSMSKNQVWDLVDPPEGIVPIGNKWVFKRKIGADGKVETYKARLVAKGYRQKQGVDYEETFSPVAMLKSLRIMLAIAAHYDYEVWQMDVKTAFLNVSIEEDIFMDQPKGFESKDKSKVCKLKRSIYGLTQVSRSW 234
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY) HSP 1 Score: 90.1 bits (222), Expect = 2.780e-18 Identity = 51/143 (35.66%), Postives = 82/143 (57.34%), Query Frame = 1
Query: 10 WQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW 438
W+ A E ++ L+ +VE PKN+ VV + +++ K G +GK+EKYK RLVA G Q+KGI + +P S + +LSLAA D E+ +D + A+L +D+EI+++ + G V +L +++Y L QA W
Sbjct: 9 WKIACAQEMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQASCEW 151
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA) HSP 1 Score: 90.1 bits (222), Expect = 3.560e-18 Identity = 52/146 (35.62%), Postives = 81/146 (55.48%), Query Frame = 1
Query: 4 EHWQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYR-EFPGAVGRLNEAIYRLVQADRCW 438
E W+ A E + L E W V+ PK K VV I+ K+G DGK+++YK RLVA G Q GI + +P S + ++SLAA DW+L +D + A+L +++E++++ + E V RLN+++Y L Q+ R W
Sbjct: 862 EKWRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGENNDVVCRLNKSLYGLKQSPRAW 1007
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI) HSP 1 Score: 89.7 bits (221), Expect = 4.740e-18 Identity = 50/145 (34.48%), Postives = 82/145 (56.55%), Query Frame = 1
Query: 4 EHWQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW 438
E W+RA + E S LI+ WT+ + P + ++ +I+K+K DGKV +YK RLV G Q GI + +P S + + SLAA +D+E+ D + A+L +D+EIF++ + + G V +L +++Y L Q+ R W
Sbjct: 578 EQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAAKEDFEIAQFDIKTAFLNGELDEEIFMQLPTRVTD-AGNVVKLQKSLYGLKQSPRQW 721
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A2N5UJB8_9BASI (Uncharacterized protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5UJB8_9BASI) HSP 1 Score: 89.7 bits (221), Expect = 4.910e-18 Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 1
Query: 4 EHWQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW 438
E W +A VE + L E +W + P +K ++ ++ K G DG ++K R VA G Q+ G+ F A +P S + +L++AA W + DF AYL +PID+EI+++ PG +L +A+Y QA RCW
Sbjct: 1154 EEWLKAIAVELNNLEEMRVWAVAQLPSDKKALNGRWVFATKPGTDGSNVRFKARFVAKGFTQVAGVDFNATFAPTTTFVSLRLLLTVAAAHRWPVHSFDFVAAYLNLPIDEEIWLKPPEGMDVPPGQALKLEKALYGTRQAARCW 1298
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A2N5TVF5_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5TVF5_9BASI) HSP 1 Score: 89.4 bits (220), Expect = 6.570e-18 Identity = 49/145 (33.79%), Postives = 75/145 (51.72%), Query Frame = 1
Query: 4 EHWQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW 438
E W +A VE + L E +W + P +K ++ ++ K G DG ++K R VA G Q+ G+ F A +P S +L++AA W + DF AYL +PID+EI+++ PG +L +A+Y QA RCW
Sbjct: 740 EEWLKAIAVELNNLKEMRVWAVAQLPSDKKALNGRWVFATKPGTDGSNVRFKARFVAKGFTQVAGVDFNATFAPTATFVSLCLLLTVAAAHQWPVHSFDFVAAYLNLPIDEEIWLKPPEGMDVPPGQALKLEKALYSTQQAARCW 884
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Match: A0A0C4ENF5_PUCT1 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A0C4ENF5_PUCT1) HSP 1 Score: 88.6 bits (218), Expect = 1.150e-17 Identity = 48/146 (32.88%), Postives = 77/146 (52.74%), Query Frame = 1
Query: 1 WEHWQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEKYKCRLVAHGNRQIKGIRFRAASSPAPAAASTKKMLSLAAIQDWELRHVDFELAYLQVPIDQEIFVETRVKYREFPGAVGRLNEAIYRLVQADRCW 438
W+ W+ A + E S L+ +W+ + PK + + ++ K D +V ++K R VA G QI+G F +P S + + +LAA +W +R DF AYL PID+E++V+ PG +L++A+Y QA RCW
Sbjct: 211 WDKWKFAIEEELSNLLRMKVWSALPCPKGRTPLDGRWVFAEKSNDQSEVVRWKARYVAKGFTQIEGYDFNKTFAPTATFVSMRLLFTLAAKFNWPVRSFDFVAAYLNSPIDEEVWVKAPEGMNLPPGYAMKLHKALYGTKQAARCW 356 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47467.11792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig47467.11792.1 >prot_H-paniculata_contig47467.11792.1 ID=prot_H-paniculata_contig47467.11792.1|Name=mRNA_H-paniculata_contig47467.11792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp WEHWQRAEKVETSGLIEKGLWTQVERPKNKLVVSTMMIYKRKIGDDGKVEback to top mRNA from alignment at H-paniculata_contig47467:181..618- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig47467.11792.1 ID=mRNA_H-paniculata_contig47467.11792.1|Name=mRNA_H-paniculata_contig47467.11792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=438bp|location=Sequence derived from alignment at H-paniculata_contig47467:181..618- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig47467:181..618- >mRNA_H-paniculata_contig47467.11792.1 ID=mRNA_H-paniculata_contig47467.11792.1|Name=mRNA_H-paniculata_contig47467.11792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig47467:181..618- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |