mRNA_H-paniculata_contig47310.11760.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE) HSP 1 Score: 193 bits (490), Expect = 2.170e-53 Identity = 99/210 (47.14%), Postives = 135/210 (64.29%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDK----------PVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVA 597
I + +A+YGLKQ+GR W + LV N G Q K+DPCVFR + VV MI+ ++VDD++VAG C+ L A+L +F T GE +W+ GCA RD+ G +S P R A+GS++W+S +RPD++ AVRAVAR AH P RHW A+ KI+ YLK T+DLG+ ++RG L L+VYVDA YAD + RRSV+G+A
Sbjct: 678 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMGEEWPAREAIGSMVWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVAGLA 885
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE) HSP 1 Score: 167 bits (422), Expect = 7.580e-46 Identity = 89/199 (44.72%), Postives = 124/199 (62.31%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVA 597
I + +A+YGLKQ+GR W + LV N G Q K+DPCVFR + VV MI+ ++VDD++VAG C+ + + + G R DE+ + PVR A+GS++W+S +RPD++ AVRAVAR AH P R+W A+ KI+ YLK T+DLG+ ++RG L L+VYVDA YAD + RRSVSG+A
Sbjct: 178 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEECQCMVERFDVKSTSRIPATPGADLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRNWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLA 372
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE) HSP 1 Score: 171 bits (434), Expect = 8.410e-46 Identity = 96/239 (40.17%), Postives = 132/239 (55.23%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLS--------------------------------------DKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAV 600
++++ +A+YGLKQ+GR W +LV++ G Q ++DPCVFR +G V I+ ++VDD++ G + + L +LR GE WY GCA RD+ G LS DKPVR A+G L+W + TRPDIA+A+ AV R AH PT R WKA+V+I+SYL T DLG+ + RG L+L VYVDA YAD+ RRSV+G+AV
Sbjct: 877 VLKVERALYGLKQSGREWGFEAANILVDS-GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAV 1114
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 171 bits (434), Expect = 8.720e-46 Identity = 96/239 (40.17%), Postives = 132/239 (55.23%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLS--------------------------------------DKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAV 600
++++ +A+YGLKQ+GR W +LV++ G Q ++DPCVFR +G V I+ ++VDD++ G + + L +LR GE WY GCA RD+ G LS DKPVR A+G L+W + TRPDIA+A+ AV R AH PT R WKA+V+I+SYL T DLG+ + RG L+L VYVDA YAD+ RRSV+G+AV
Sbjct: 1430 VLKVERALYGLKQSGREWGFEAANILVDS-GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAV 1667
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.230e-44 Identity = 97/242 (40.08%), Postives = 128/242 (52.89%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYADKSNWRRSVSGVAVM 603
IV+LNK++YGLKQA R W L L+ +G Q +D CVFRL + G V + L VHVDD+ G+ +CD L G+L+WY GC + RD G DE++ P R +GSL+WL+ TRPDIA+AVRAVAR +P + HW+A + I+ Y+ RT DLG+ F RG L++ V+VDADYA K+ RRSVSG VM
Sbjct: 68 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVM 308
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.740e-43 Identity = 97/242 (40.08%), Postives = 128/242 (52.89%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYADKSNWRRSVSGVAVM 603
IV+LNK++YGLKQA R W L L+ +G Q +D CVFRL + G V + L VHVDD+ G+ +CD L G+L+WY GC + RD G DE++ P R +GSL+WL+ TRPDIA+AVRAVAR +P + HW+A + I+ Y+ RT DLG+ F RG L++ V+VDADYA K+ RRSVSG VM
Sbjct: 242 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVM 482
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE) HSP 1 Score: 155 bits (393), Expect = 2.030e-43 Identity = 91/239 (38.08%), Postives = 127/239 (53.14%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAV 600
+V++ +A+Y LKQ+GR W + L+ N G Q + DPCVFR +G V ++ ++VDD++VA + + LFA+L EF GE WY GCA D+ G DE DKPVR A+G L+W +TRPDIA + + + AH+PT R W A+V+I+SYL TKD G+ + RG L+ SV+VDA YAD RRS +G+AV
Sbjct: 5 VVKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDRSVFVDASYADNEVDRRSTTGLAV 241
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5J7P7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P7_9PHAE) HSP 1 Score: 160 bits (404), Expect = 7.830e-43 Identity = 92/232 (39.66%), Postives = 129/232 (55.60%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIV-------------------------------RGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAV 600
+V++ +A+YGLKQ+GR W + L+ N G Q + DPCVFR +G V ++ ++VDD++VA + + LFA+L +F GE WY GCA D+ R DE DKPVR A+G L+W +TRPDIA + + + AH+PT R W A+V+I+SYL TKD G+ + RG L+LSV+VDA YAD RRS +G+AV
Sbjct: 285 VVKVERALYGLKQSGREWWFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDLSQTAYIESMLKRFDVTTNAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLSVFVDASYADNEVDRRSTTGLAV 514
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.020e-42 Identity = 97/242 (40.08%), Postives = 128/242 (52.89%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYADKSNWRRSVSGVAVM 603
IV+LNK++YGLKQA R W L L+ +G Q +D CVFRL + G V + L VHVDD+ G+ +CD L G+L+WY GC + RD G DE++ P R +GSL+WL+ TRPDIA+AVRAVAR +P + HW+A + I+ Y+ RT DLG+ F RG L++ V+VDADYA K+ RRSVSG VM
Sbjct: 763 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVM 1003
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE) HSP 1 Score: 155 bits (392), Expect = 1.320e-42 Identity = 88/201 (43.78%), Postives = 123/201 (61.19%), Query Frame = 1
Query: 1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDI--VRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVA 597
IV+ +A+YGLKQ+GR W + LV N G Q K+DPCVFR + VV MI+ ++VDD++VAG R + Q+T ++ D+ R +E + PVR A+GS++W+S +RPD++ AV AV R AH P RHW A+ KI+ YL T+ LG+ ++RG L L+VYVDA YAD + RRSVSG+A
Sbjct: 45 IVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGM---------VRRFDVQSTS-----HIPATPGADLGPKRDNEKGGEWPVREAIGSMVWVSTFSRPDVSFAVPAVVRHAHAPAKRHWDAIQKILGYLTGTRYLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLA 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig47310.11760.1 >prot_H-paniculata_contig47310.11760.1 ID=prot_H-paniculata_contig47310.11760.1|Name=mRNA_H-paniculata_contig47310.11760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHback to top mRNA from alignment at H-paniculata_contig47310:746..1465- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig47310.11760.1 ID=mRNA_H-paniculata_contig47310.11760.1|Name=mRNA_H-paniculata_contig47310.11760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=720bp|location=Sequence derived from alignment at H-paniculata_contig47310:746..1465- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig47310:746..1465- >mRNA_H-paniculata_contig47310.11760.1 ID=mRNA_H-paniculata_contig47310.11760.1|Name=mRNA_H-paniculata_contig47310.11760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig47310:746..1465- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |