mRNA_H-paniculata_contig47310.11760.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47310.11760.1
Unique NamemRNA_H-paniculata_contig47310.11760.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.170e-53
Identity = 99/210 (47.14%), Postives = 135/210 (64.29%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDK----------PVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVA 597
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G   +S            P R A+GS++W+S  +RPD++ AVRAVAR AH P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + RRSV+G+A
Sbjct:  678 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMGEEWPAREAIGSMVWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVAGLA 885          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 7.580e-46
Identity = 89/199 (44.72%), Postives = 124/199 (62.31%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVA 597
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+     +      +   +    G        R DE+  + PVR A+GS++W+S  +RPD++ AVRAVAR AH P  R+W A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + RRSVSG+A
Sbjct:  178 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEECQCMVERFDVKSTSRIPATPGADLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRNWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLA 372          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 8.410e-46
Identity = 96/239 (40.17%), Postives = 132/239 (55.23%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLS--------------------------------------DKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAV 600
            ++++ +A+YGLKQ+GR W      +LV++ G  Q ++DPCVFR   +G V  I+ ++VDD++  G   + + L  +LR        GE  WY GCA  RD+  G   LS                                      DKPVR A+G L+W +  TRPDIA+A+ AV R AH PT R WKA+V+I+SYL  T DLG+ + RG  L+L VYVDA YAD+   RRSV+G+AV
Sbjct:  877 VLKVERALYGLKQSGREWGFEAANILVDS-GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAV 1114          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 8.720e-46
Identity = 96/239 (40.17%), Postives = 132/239 (55.23%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLS--------------------------------------DKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAV 600
            ++++ +A+YGLKQ+GR W      +LV++ G  Q ++DPCVFR   +G V  I+ ++VDD++  G   + + L  +LR        GE  WY GCA  RD+  G   LS                                      DKPVR A+G L+W +  TRPDIA+A+ AV R AH PT R WKA+V+I+SYL  T DLG+ + RG  L+L VYVDA YAD+   RRSV+G+AV
Sbjct: 1430 VLKVERALYGLKQSGREWGFEAANILVDS-GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAV 1667          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.230e-44
Identity = 97/242 (40.08%), Postives = 128/242 (52.89%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYADKSNWRRSVSGVAVM 603
            IV+LNK++YGLKQA R W   L   L+  +G  Q  +D CVFRL + G V + L VHVDD+   G+  +CD     L         G+L+WY GC + RD   G                                      DE++   P R  +GSL+WL+  TRPDIA+AVRAVAR   +P + HW+A + I+ Y+ RT DLG+ F RG    L++ V+VDADYA K+  RRSVSG  VM
Sbjct:   68 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVM 308          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.740e-43
Identity = 97/242 (40.08%), Postives = 128/242 (52.89%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYADKSNWRRSVSGVAVM 603
            IV+LNK++YGLKQA R W   L   L+  +G  Q  +D CVFRL + G V + L VHVDD+   G+  +CD     L         G+L+WY GC + RD   G                                      DE++   P R  +GSL+WL+  TRPDIA+AVRAVAR   +P + HW+A + I+ Y+ RT DLG+ F RG    L++ V+VDADYA K+  RRSVSG  VM
Sbjct:  242 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVM 482          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.030e-43
Identity = 91/239 (38.08%), Postives = 127/239 (53.14%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAV 600
            +V++ +A+Y LKQ+GR W     + L+ N G  Q + DPCVFR   +G V  ++ ++VDD++VA    + + LFA+L  EF     GE  WY GCA   D+  G                                      DE   DKPVR A+G L+W   +TRPDIA  +  + + AH+PT R W A+V+I+SYL  TKD G+ + RG  L+ SV+VDA YAD    RRS +G+AV
Sbjct:    5 VVKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDRSVFVDASYADNEVDRRSTTGLAV 241          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5J7P7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P7_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 7.830e-43
Identity = 92/232 (39.66%), Postives = 129/232 (55.60%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIV-------------------------------RGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAV 600
            +V++ +A+YGLKQ+GR W     + L+ N G  Q + DPCVFR   +G V  ++ ++VDD++VA    + + LFA+L  +F     GE  WY GCA   D+                                R DE   DKPVR A+G L+W   +TRPDIA  +  + + AH+PT R W A+V+I+SYL  TKD G+ + RG  L+LSV+VDA YAD    RRS +G+AV
Sbjct:  285 VVKVERALYGLKQSGREWWFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDLSQTAYIESMLKRFDVTTNAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLSVFVDASYADNEVDRRSTTGLAV 514          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.020e-42
Identity = 97/242 (40.08%), Postives = 128/242 (52.89%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYADKSNWRRSVSGVAVM 603
            IV+LNK++YGLKQA R W   L   L+  +G  Q  +D CVFRL + G V + L VHVDD+   G+  +CD     L         G+L+WY GC + RD   G                                      DE++   P R  +GSL+WL+  TRPDIA+AVRAVAR   +P + HW+A + I+ Y+ RT DLG+ F RG    L++ V+VDADYA K+  RRSVSG  VM
Sbjct:  763 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVM 1003          
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.320e-42
Identity = 88/201 (43.78%), Postives = 123/201 (61.19%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDI--VRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVA 597
            IV+  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG            R + Q+T      ++      D+   R +E   + PVR A+GS++W+S  +RPD++ AV AV R AH P  RHW A+ KI+ YL  T+ LG+ ++RG  L L+VYVDA YAD  + RRSVSG+A
Sbjct:   45 IVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGM---------VRRFDVQSTS-----HIPATPGADLGPKRDNEKGGEWPVREAIGSMVWVSTFSRPDVSFAVPAVVRHAHAPAKRHWDAIQKILGYLTGTRYLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLA 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47310.11760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTV6_9PHAE2.170e-5347.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFN5_9PHAE7.580e-4644.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKS3_9PHAE8.410e-4640.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE8.720e-4640.17Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE1.230e-4440.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE1.740e-4340.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KW89_9PHAE2.030e-4338.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J7P7_9PHAE7.830e-4339.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE1.020e-4240.08Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KLY3_9PHAE1.320e-4243.78Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47310contigH-paniculata_contig47310:746..1465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score116.3
Seed ortholog evalue1.6e-23
Seed eggNOG ortholog6334.EFV48939
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,40FC4@6231,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
Exons2
Model size606
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47310.11760.1prot_H-paniculata_contig47310.11760.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47310 746..1444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.418096-CDS-H-paniculata_contig47310:745..10421622930406.418096-CDS-H-paniculata_contig47310:745..1042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47310 746..1042 -
1691481277.45851-CDS-H-paniculata_contig47310:745..10421691481277.45851-CDS-H-paniculata_contig47310:745..1042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47310 746..1042 -
1622930406.434721-CDS-H-paniculata_contig47310:1156..14441622930406.434721-CDS-H-paniculata_contig47310:1156..1444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47310 1157..1444 -
1691481277.4698088-CDS-H-paniculata_contig47310:1156..14441691481277.4698088-CDS-H-paniculata_contig47310:1156..1444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47310 1157..1444 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930406.4491098-UTR-H-paniculata_contig47310:1444..14651622930406.4491098-UTR-H-paniculata_contig47310:1444..1465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47310 1445..1465 -
1691481277.4780421-UTR-H-paniculata_contig47310:1444..14651691481277.4780421-UTR-H-paniculata_contig47310:1444..1465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig47310 1445..1465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47310.11760.1

>prot_H-paniculata_contig47310.11760.1 ID=prot_H-paniculata_contig47310.11760.1|Name=mRNA_H-paniculata_contig47310.11760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVH
VDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDL
SDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIIS
YLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVM*
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mRNA from alignment at H-paniculata_contig47310:746..1465-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47310.11760.1 ID=mRNA_H-paniculata_contig47310.11760.1|Name=mRNA_H-paniculata_contig47310.11760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=720bp|location=Sequence derived from alignment at H-paniculata_contig47310:746..1465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTAAGGCTGAATAAGGCTATGTATGGGCTCAAGCAGGCAGGACGGAT GTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAACAACGTCGGCATGACGC AATCCAAGTCTGACCCTTGTGTGTTTAGGCTCGAGAAAAATGGGGTGGTA GATATGATTCTGTGTGTTCATGTAGATGATGTAATTGTTGCTGGTAAAAG TGTGAAGTGCGATTCTCTGTTTGCAGCGTTGAGGGCGGAGTTCCAAACCA CGAGAGGCGAACTCAAGTGGTACCTGGGTTGTGCATTTTGGCGTGACATA GTGAGGGGAGTTGTCCGCATCACGCAACGGACATTCGTTGATACTGTCGT TAAACGCTTCGACGTGGAAACCGAGTCTAACCTTCCTGCGTCTCAGCAGG CAGATCTTGGGCCTAGGAGGGAGGATGAGGATTTGTCTGACAAGCCTGTG CGCTCGGCTGTTGGGAGTTTGATATGGCTAAGTGGTATGACGAGACCTGA CATAGCCAGTGCAGTACGGGCAGTAGCGAGGCAAGCGCACAATCCGACAG ATAGGCACTGGAAAGCAGTGGTAAAGATCATCTCGTATCTTAAGAGAACA AAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGAGATCTTAATTTGTCAGT TTATGTAGACGCAGATTATGCGGATAAGTCCAACTGGAGGCGTTCAGTTT CAGGCGTGGCAGTAATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig47310:746..1465-

>mRNA_H-paniculata_contig47310.11760.1 ID=mRNA_H-paniculata_contig47310.11760.1|Name=mRNA_H-paniculata_contig47310.11760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig47310:746..1465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGGGCTCAAGCAGGCAGGACGGATGTGGTCAAAGCGCCTTGTAGA
AGTACTCGTAAACAACGTCGGCATGACGCAATCCAAGTCTGACCCTTGTG
TGTTTAGGCTCGAGAAAAATGGGGTGGTAGATATGATTCTGTGTGTTCAT
GTAGATGATGTAATTGTTGCTGGTAAAAGTGTGAAGTGCGATTCTCTGTT
TGCAGCGTTGAGGGCGGAGTTCCAAACCACGAGAGGCGAACTCAAGTGGT
ACCTGGGTTGTGCATTTTGGCGTGACATAGTGAGGGGAATGTATGGGCTC
AAGCAGGCAGGACGGATGTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAA
CAACGTCGGCATGACGCAATCCAAGTCTGACCCTTGTGTGTTTAGGCTCG
AGAAAAATGGGGTGGTAGATATGATTCTGTGTGTTCATGTAGATGATGTA
ATTGTTGCTGGTAAAAGTGTGAAGTGCGATTCTCTGTTTGCAGCGTTGAG
GGCGGAGTTCCAAACCACGAGAGGCGAACTCAAGTGGTACCTGGGTTGTG
CATTTTGGCGTGACATAGTGAGGGGAGATGAGGATTTGTCTGACAAGCCT
GTGCGCTCGGCTGTTGGGAGTTTGATATGGCTAAGTGGTATGACGAGACC
TGACATAGCCAGTGCAGTACGGGCAGTAGCGAGGCAAGCGCACAATCCGA
CAGATAGGCACTGGAAAGCAGTGGTAAAGATCATCTCGTATCTTAAGAGA
ACAAAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGAGATCTTAATTTGTC
AGTTTATGTAGACGCAGATTATGCGGATAAGTCCAACTGGAGGCGTTCAG
TTTCAGGCGTGGCAGTAATGTGAGATGAGGATTTGTCTGACAAGCCTGTG
CGCTCGGCTGTTGGGAGTTTGATATGGCTAAGTGGTATGACGAGACCTGA
CATAGCCAGTGCAGTACGGGCAGTAGCGAGGCAAGCGCACAATCCGACAG
ATAGGCACTGGAAAGCAGTGGTAAAGATCATCTCGTATCTTAAGAGAACA
AAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGAGATCTTAATTTGTCAGT
TTATGTAGACGCAGATTATGCGGATAAGTCCAACTGGAGGCGTTCAGTTT
CAGGCGTGGCAGTAATGTGA
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