mRNA_H-paniculata_contig47293.11754.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: A0A251T6N3_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T6N3_HELAN) HSP 1 Score: 132 bits (332), Expect = 4.940e-31 Identity = 95/293 (32.42%), Postives = 155/293 (52.90%), Query Frame = 1
Query: 1 MESSKSHVHWIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRL--YCNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQVKLL-HERLGHVRDLPTVARQ------QGI-RLSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
ME + ++ HW +DSGC+ +H+T R+LF + +R + D L+V G G+++ I ++ VF YV ++LSV +++ +G F + + NG + T+ K + L E ++ A K+ +L H+R GHV +L T+A G+ ++S +C C GK +++ + + T+PL+L+H+DI GP+ +S GGCR+ I +DDYSR VY L+ KSEAL KLF+ + IK LR+D+GGEY GK F+++
Sbjct: 269 MEETDNNDHWYLDSGCS-NHMTGNRNLFTSLDESIRKEVRTGDVKKLEVLGSGEIKIAIQGQNKRVKDVF----YVKGLRHNLLSVGQLIKRGYTITFQENKCIIKDVRNGTLGEIKMTNNKMFPLH----PEKDLTLALTMTTKETSILWHKRYGHV-NLDTLADMGNKDIVYGLPKISRDTSICEGCVSGKQARKVFPNKTKWQATKPLQLIHSDICGPMRTESIGGCRYFITFIDDYSRKTWVYFLKLKSEALSYFKLFKALSENQSDHTIKTLRTDRGGEYCGKSFQEY 551
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: A0A251TN47_HELAN (Putative zinc finger, CCHC-type n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TN47_HELAN) HSP 1 Score: 129 bits (323), Expect = 7.770e-30 Identity = 94/285 (32.98%), Postives = 144/285 (50.53%), Query Frame = 1
Query: 28 WIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRLY-----CNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQVKLLHERLGHVR-----DLPTVARQQGI-RLSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVDK-SFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
W +DSGC+ +H+T +DLF R + D+ LDV G GDV I E I N FYV ++LSV ++V +G + F + ++ C G+ + T K Y L + +V + + L H R GH+ D+ G+ +++ VC C GK +++P K + R +EPL+LVH+DI GP++ S GGC++ I +DD+SR VY L+ KS+AL K+F++ V IK +R+D+GGEY G F+ F
Sbjct: 307 WYLDSGCS-NHMTGNKDLFVNLNNSERREVRTGDDKRLDVLGCGDVNVKIKGHEKRIP----NVFYVAGLKHNLLSVGQLVQKGYDVCFNDKGCVIHDSSGRCIGVV---KMTGNKMYPLNL--NHDVIPRVCNMTTQDNSTLWHRRYGHLNLETLHDMGKNGTVNGLPKINKSEHVCEGCVFGKHARKPFSKKAKWRASEPLQLVHSDICGPMNTPSIGGCKYFITFIDDFSRKTWVYFLKLKSDALHYFKIFKQLVENQIERKIKGIRTDRGGEYCGHEFQNF 581
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: A0A251SDS7_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SDS7_HELAN) HSP 1 Score: 127 bits (320), Expect = 1.690e-29 Identity = 95/292 (32.53%), Postives = 152/292 (52.05%), Query Frame = 1
Query: 1 MESSKSHVHWIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRL--YCNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQVKLLHERLGHVRDLPTVARQ------QGI-RLSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
ME + + HW +DSGC+ +H+T RDLF + +R + D+ L+V G G+V +I I+ N FYV ++LSV +++ +G F + + N T+ K + L G ++ + A ++ L H+R GHV +L T+A G+ ++S + +C C GK +++ + + T+PL+L+H+DI GP+ +S GCR+ I +DDYSR VY L+ KSEAL KLF+ + IK LR+D+GGEY GK F+ +
Sbjct: 349 MEETVNDDHWYLDSGCS-NHMTGNRDLFITLDESIRKEVRTGDDKKLEVLGSGEVMIIIQGRSKRIQ----NVFYVKGLRHNLLSVGQLIKKGYMVKFQEGKCIIKDVRNETLGVIRMTNNKMFPLNP--GKDLTL-ALTMTTKETSTLWHKRYGHV-NLDTLADMGNKDLVYGLPKISRDISICEGCISGKQARKGFPNKTKWQATKPLQLIHSDICGPMRTESISGCRYFITFIDDYSRKTWVYFLKLKSEALNYFKLFKALTENQSDHMIKTLRTDRGGEYCGKLFQDY 631
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: UPI001652EAC1 (uncharacterized protein LOC110906461 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652EAC1) HSP 1 Score: 127 bits (320), Expect = 1.950e-29 Identity = 95/292 (32.53%), Postives = 152/292 (52.05%), Query Frame = 1
Query: 1 MESSKSHVHWIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRL--YCNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQVKLLHERLGHVRDLPTVARQ------QGI-RLSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
ME + + HW +DSGC+ +H+T RDLF + +R + D+ L+V G G+V +I I+ N FYV ++LSV +++ +G F + + N T+ K + L G ++ + A ++ L H+R GHV +L T+A G+ ++S + +C C GK +++ + + T+PL+L+H+DI GP+ +S GCR+ I +DDYSR VY L+ KSEAL KLF+ + IK LR+D+GGEY GK F+ +
Sbjct: 355 MEETVNDDHWYLDSGCS-NHMTGNRDLFITLDESIRKEVRTGDDKKLEVLGSGEVMIIIQGRSKRIQ----NVFYVKGLRHNLLSVGQLIKKGYMVKFQEGKCIIKDVRNETLGVIRMTNNKMFPLNP--GKDLTL-ALTMTTKETSTLWHKRYGHV-NLDTLADMGNKDLVYGLPKISRDISICEGCISGKQARKGFPNKTKWQATKPLQLIHSDICGPMRTESISGCRYFITFIDDYSRKTWVYFLKLKSEALNYFKLFKALTENQSDHMIKTLRTDRGGEYCGKLFQDY 637
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: A0A1X7SX46_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SX46_AMPQE) HSP 1 Score: 127 bits (318), Expect = 3.010e-29 Identity = 95/285 (33.33%), Postives = 145/285 (50.88%), Query Frame = 1
Query: 28 WIIDSGCTGHHLTPQRDLFQIFRQV-VRGPIAAADEGGLDVEGQGDVE-GLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRLYCNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQ--VKLLHERLGHV-----RDLPTVARQQGIRL--SGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVDK-SFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
W+IDSG T H +T + L + + + V ++ D ++ EG GD+E +I+ N YVP+ + ++ SV VS+G FG R + + + R + L V+ + VE Q+A A ++ L H RLGH+ +DL T +G+ S L C +C +GK +QP K E +T L+LVH+D+ GP+ S GG R+ + DD+SR ++Y+++ KSEAL + FE V GL I LR+D GGEY K F +F
Sbjct: 172 WLIDSGATSH-MTYSKGLLRHYHKFDVPQRVSLGDGRMVEAEGSGDIELDMIFKVSKKKGCTMKNVLYVPKLTSNLFSVRAAVSKGNHIRFGAARCWIKDKNRKLIGMGSLRNK--LYVLDCEPVEPQSASVASQEASTADLWHRRLGHLGKQQLKDLATRELLKGVTSFRSNDLSFCESCIEGKMHRQPFKSSGEIHSTRKLQLVHSDVCGPMPTDSLGGKRYFVSFTDDFSRCSQIYLMKHKSEALNKFREFEAMVKNETGLSICTLRTDNGGEYVSKEFEEF 453
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: UPI00142E428A (uncharacterized protein LOC108871170 n=2 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E428A) HSP 1 Score: 126 bits (317), Expect = 4.850e-29 Identity = 93/289 (32.18%), Postives = 147/289 (50.87%), Query Frame = 1
Query: 28 WIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWER--------RRLYCNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEK-QVKLLHERLGHVRDLPTVARQQGIRLSG------KLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
W++DSG T +H+T + F + ++ PI + + G+GD+ + + IR N F VP + ++LSV ++VS G F +R RR+ + IP H K Y +R+ +V+ A A E+ +++ H+RLGHV D Q + G K C AC GK S++ K + +T E LE+VHTD+ GP+ +S G R+ ++ +DD++ M VY ++QKSE K F+ V + + IK LRSD GGE+T + F +F
Sbjct: 319 WLVDSGAT-NHMTKEESYFSKLDRSIKVPIKIGNGSTVMTAGKGDITVMTKGGKKTIR----NVFLVPGLAKNLLSVPQIVSSGYRVSFQEKRCIIDDAKGRRI----MDIPMTH---KSYRIRM---SSAQVEEALSASEQGKMETWHKRLGHVGDKRLQQMQDKDLVKGLPKFKVKKEACEACRLGKQSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSVDGSRYFLLFLDDHTHMCWVYFMKQKSETFSLFKKFKAMVEKQSDCTIKTLRSDGGGEFTSREFNRF 592
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: A0A6D2HJM6_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJM6_9BRAS) HSP 1 Score: 126 bits (317), Expect = 4.850e-29 Identity = 90/281 (32.03%), Postives = 144/281 (51.25%), Query Frame = 1
Query: 28 WIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRLY-CNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQVKLLHERLGHVRDLPTVARQQGIRLSG------KLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
W++DSGCT +H+T + F + V+ PI + + G+GD+ + T G + + N F VP ++LSV ++ S G + F +R ++ NG I + K + +++ VE +A + + + H+RLGHV Q + G + C AC GK S++ K + +T E LE+VHTD+ GP+ ++S G R+ ++ +DDY+ M VY L+QKSE K F+ V + +G IK LRSD GGE+T F +F
Sbjct: 326 WLVDSGCT-NHMTKEERYFSSINKSVKVPIRVGNGDIVMTVGKGDI--TVMTNHG--KRIIKNVFLVPGLEKNLLSVPQIFSSGYQVRFEDKRCIIHDANGKKIMDIGMTNKSFKIKL---SSVEEEAMTANVHME-ETWHKRLGHVGKRRLQEMQDKDLVKGLPSFKVEKEACKACNLGKQSRKSFPKESQTKTKEKLEIVHTDVCGPMQNQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETFLKFKKFKAMVEKQSGCVIKTLRSDGGGEFTSHEFNRF 597
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: A0A151S1T9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S1T9_CAJCA) HSP 1 Score: 120 bits (302), Expect = 6.060e-29 Identity = 87/276 (31.52%), Postives = 149/276 (53.99%), Query Frame = 1
Query: 28 WIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRLYCNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQVKLLHERLGHVRD--LPTVARQ---QGIRLSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPF 837
WI+DSG T H+TP+++ F + G + +++G V G GDV + T G ++++ + P+ +++SV+ + G + +FG + +L + + + K Y + +V + + A++ + L H RL H+ + L +A++ QG++ S +L CS C GK ++ KK+ R +E L+LVH+D+ GP+ KSF G + +I +DD SR VY L++K + L K F V R +G +KR+R+D GGEY G PF
Sbjct: 2 WIVDSGAT-LHVTPRKEFFTSYTSGDFGVLKMSNDGVSKVIGVGDV--CLQTNMG-MQLLLRGVKHAPDVRFNLISVQILDDGGYDNHFGSGKWKLTKGNLVVAKGEKNSKLYWTKALVAKD-----SVNAMDMEASLWHRRLSHISEKGLNCLAQKDVLQGLK-SAELEKCSHCMAGKQTRVSFKKHPPSRKSELLQLVHSDVCGPLKVKSFSGALYFVIFIDDCSRKLWVYTLQRKDQVLERFKQFHALVERQSGKKLKRIRTDNGGEYCG-PF 266
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: A0A151QP37_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QP37_CAJCA) HSP 1 Score: 124 bits (312), Expect = 2.060e-28 Identity = 91/287 (31.71%), Postives = 150/287 (52.26%), Query Frame = 1
Query: 28 WIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRLYCNGITIPFEHTSR-------KEYSLRVIVGDEVEVQAAKRAIEKQVKLLHERLGHV--RDLPTVARQQGIR----LSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
W +DSG + +H+ +R +F + V+G +A DE + VEG+G+V LI G + + N +YVP +ILS+ +++ +G + +L N ++I ++TSR + V+ Q K + Q L H R GH+ + L ++++ +R ++ VC C GK + K + R +PLEL+HTD+ GP+ +S G + + +DD+SR VY L++KSE K F+ V + NGL IK LRSD+GGE+T K F+++
Sbjct: 268 WYLDSGAS-NHMCGKRSMFVELDESVKGNVAFGDESKVAVEGKGNV--LIRLKNGEHQFI-SNVYYVPSMKSNILSLGQLLEKGYDI-------QLKNNNLSIR-DNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFLFFIDDFSRKTWVYFLKEKSEVFENFKKFKDNVEKENGLLIKALRSDRGGEFTSKEFQKY 542
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: Q9M197_ARATH (Copia-type reverse transcriptase-like protein n=6 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9M197_ARATH) HSP 1 Score: 124 bits (310), Expect = 4.060e-28 Identity = 87/295 (29.49%), Postives = 154/295 (52.20%), Query Frame = 1
Query: 4 ESSKSHVHWIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRLYCNGITIPFEHTS-------RKEYSLRVIVGDEVEVQAAKRAIEKQVKLLHERLGHVR--DLPTVARQQGIR----LSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
E ++H W +DSG + +H+ ++ +F + VRG +A DE ++V+G+G++ LI G + + N +Y+P +ILS+ +++ +G + RL N ++I + ++ K + + +++ Q K +++ L H R GH+ L ++R++ +R ++ VC C G K K R +PLEL+HTD+ GP+ KS G + ++ +DD+SR VY L++KSE K F+ V + +GL IK +RSD GGE+T K F ++
Sbjct: 328 EQEENHK-WYLDSGAS-NHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNI--LIRLKNGDHQFI-SNVYYIPSMKTNILSLGQLLEKGYDI-------RLKDNNLSIRDKESNLITKVPMSKNRMFVLNIRNDI-AQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKY 609 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig47293.11754.1 >prot_H-paniculata_contig47293.11754.1 ID=prot_H-paniculata_contig47293.11754.1|Name=mRNA_H-paniculata_contig47293.11754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp MESSKSHVHWIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEback to top mRNA from alignment at H-paniculata_contig47293:544..1464+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig47293.11754.1 ID=mRNA_H-paniculata_contig47293.11754.1|Name=mRNA_H-paniculata_contig47293.11754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=921bp|location=Sequence derived from alignment at H-paniculata_contig47293:544..1464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig47293:544..1464+ >mRNA_H-paniculata_contig47293.11754.1 ID=mRNA_H-paniculata_contig47293.11754.1|Name=mRNA_H-paniculata_contig47293.11754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig47293:544..1464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |