mRNA_H-paniculata_contig47293.11754.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig47293.11754.1
Unique NamemRNA_H-paniculata_contig47293.11754.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: A0A251T6N3_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T6N3_HELAN)

HSP 1 Score: 132 bits (332), Expect = 4.940e-31
Identity = 95/293 (32.42%), Postives = 155/293 (52.90%), Query Frame = 1
Query:    1 MESSKSHVHWIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRL--YCNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQVKLL-HERLGHVRDLPTVARQ------QGI-RLSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
            ME + ++ HW +DSGC+ +H+T  R+LF    + +R  +   D   L+V G G+++  I      ++ VF    YV     ++LSV +++ +G    F   +  +    NG     + T+ K + L      E ++  A     K+  +L H+R GHV +L T+A         G+ ++S    +C  C  GK +++      + + T+PL+L+H+DI GP+  +S GGCR+ I  +DDYSR   VY L+ KSEAL   KLF+      +   IK LR+D+GGEY GK F+++
Sbjct:  269 MEETDNNDHWYLDSGCS-NHMTGNRNLFTSLDESIRKEVRTGDVKKLEVLGSGEIKIAIQGQNKRVKDVF----YVKGLRHNLLSVGQLIKRGYTITFQENKCIIKDVRNGTLGEIKMTNNKMFPLH----PEKDLTLALTMTTKETSILWHKRYGHV-NLDTLADMGNKDIVYGLPKISRDTSICEGCVSGKQARKVFPNKTKWQATKPLQLIHSDICGPMRTESIGGCRYFITFIDDYSRKTWVYFLKLKSEALSYFKLFKALSENQSDHTIKTLRTDRGGEYCGKSFQEY 551          
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: A0A251TN47_HELAN (Putative zinc finger, CCHC-type n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TN47_HELAN)

HSP 1 Score: 129 bits (323), Expect = 7.770e-30
Identity = 94/285 (32.98%), Postives = 144/285 (50.53%), Query Frame = 1
Query:   28 WIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRLY-----CNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQVKLLHERLGHVR-----DLPTVARQQGI-RLSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVDK-SFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
            W +DSGC+ +H+T  +DLF       R  +   D+  LDV G GDV   I   E  I     N FYV     ++LSV ++V +G +  F  +   ++     C G+    + T  K Y L +    +V  +      +    L H R GH+      D+       G+ +++    VC  C  GK +++P  K  + R +EPL+LVH+DI GP++  S GGC++ I  +DD+SR   VY L+ KS+AL   K+F++ V       IK +R+D+GGEY G  F+ F
Sbjct:  307 WYLDSGCS-NHMTGNKDLFVNLNNSERREVRTGDDKRLDVLGCGDVNVKIKGHEKRIP----NVFYVAGLKHNLLSVGQLVQKGYDVCFNDKGCVIHDSSGRCIGVV---KMTGNKMYPLNL--NHDVIPRVCNMTTQDNSTLWHRRYGHLNLETLHDMGKNGTVNGLPKINKSEHVCEGCVFGKHARKPFSKKAKWRASEPLQLVHSDICGPMNTPSIGGCKYFITFIDDFSRKTWVYFLKLKSDALHYFKIFKQLVENQIERKIKGIRTDRGGEYCGHEFQNF 581          
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: A0A251SDS7_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SDS7_HELAN)

HSP 1 Score: 127 bits (320), Expect = 1.690e-29
Identity = 95/292 (32.53%), Postives = 152/292 (52.05%), Query Frame = 1
Query:    1 MESSKSHVHWIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRL--YCNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQVKLLHERLGHVRDLPTVARQ------QGI-RLSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
            ME + +  HW +DSGC+ +H+T  RDLF    + +R  +   D+  L+V G G+V  +I      I+    N FYV     ++LSV +++ +G    F   +  +    N        T+ K + L    G ++ + A     ++   L H+R GHV +L T+A         G+ ++S  + +C  C  GK +++      + + T+PL+L+H+DI GP+  +S  GCR+ I  +DDYSR   VY L+ KSEAL   KLF+      +   IK LR+D+GGEY GK F+ +
Sbjct:  349 MEETVNDDHWYLDSGCS-NHMTGNRDLFITLDESIRKEVRTGDDKKLEVLGSGEVMIIIQGRSKRIQ----NVFYVKGLRHNLLSVGQLIKKGYMVKFQEGKCIIKDVRNETLGVIRMTNNKMFPLNP--GKDLTL-ALTMTTKETSTLWHKRYGHV-NLDTLADMGNKDLVYGLPKISRDISICEGCISGKQARKGFPNKTKWQATKPLQLIHSDICGPMRTESISGCRYFITFIDDYSRKTWVYFLKLKSEALNYFKLFKALTENQSDHMIKTLRTDRGGEYCGKLFQDY 631          
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: UPI001652EAC1 (uncharacterized protein LOC110906461 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI001652EAC1)

HSP 1 Score: 127 bits (320), Expect = 1.950e-29
Identity = 95/292 (32.53%), Postives = 152/292 (52.05%), Query Frame = 1
Query:    1 MESSKSHVHWIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRL--YCNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQVKLLHERLGHVRDLPTVARQ------QGI-RLSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
            ME + +  HW +DSGC+ +H+T  RDLF    + +R  +   D+  L+V G G+V  +I      I+    N FYV     ++LSV +++ +G    F   +  +    N        T+ K + L    G ++ + A     ++   L H+R GHV +L T+A         G+ ++S  + +C  C  GK +++      + + T+PL+L+H+DI GP+  +S  GCR+ I  +DDYSR   VY L+ KSEAL   KLF+      +   IK LR+D+GGEY GK F+ +
Sbjct:  355 MEETVNDDHWYLDSGCS-NHMTGNRDLFITLDESIRKEVRTGDDKKLEVLGSGEVMIIIQGRSKRIQ----NVFYVKGLRHNLLSVGQLIKKGYMVKFQEGKCIIKDVRNETLGVIRMTNNKMFPLNP--GKDLTL-ALTMTTKETSTLWHKRYGHV-NLDTLADMGNKDLVYGLPKISRDISICEGCISGKQARKGFPNKTKWQATKPLQLIHSDICGPMRTESISGCRYFITFIDDYSRKTWVYFLKLKSEALNYFKLFKALTENQSDHMIKTLRTDRGGEYCGKLFQDY 637          
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: A0A1X7SX46_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SX46_AMPQE)

HSP 1 Score: 127 bits (318), Expect = 3.010e-29
Identity = 95/285 (33.33%), Postives = 145/285 (50.88%), Query Frame = 1
Query:   28 WIIDSGCTGHHLTPQRDLFQIFRQV-VRGPIAAADEGGLDVEGQGDVE-GLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRLYCNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQ--VKLLHERLGHV-----RDLPTVARQQGIRL--SGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVDK-SFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
            W+IDSG T H +T  + L + + +  V   ++  D   ++ EG GD+E  +I+           N  YVP+ + ++ SV   VS+G    FG  R  +      +    + R +  L V+  + VE Q+A  A ++     L H RLGH+     +DL T    +G+    S  L  C +C +GK  +QP K   E  +T  L+LVH+D+ GP+   S GG R+ +   DD+SR  ++Y+++ KSEAL   + FE  V    GL I  LR+D GGEY  K F +F
Sbjct:  172 WLIDSGATSH-MTYSKGLLRHYHKFDVPQRVSLGDGRMVEAEGSGDIELDMIFKVSKKKGCTMKNVLYVPKLTSNLFSVRAAVSKGNHIRFGAARCWIKDKNRKLIGMGSLRNK--LYVLDCEPVEPQSASVASQEASTADLWHRRLGHLGKQQLKDLATRELLKGVTSFRSNDLSFCESCIEGKMHRQPFKSSGEIHSTRKLQLVHSDVCGPMPTDSLGGKRYFVSFTDDFSRCSQIYLMKHKSEALNKFREFEAMVKNETGLSICTLRTDNGGEYVSKEFEEF 453          
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: UPI00142E428A (uncharacterized protein LOC108871170 n=2 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E428A)

HSP 1 Score: 126 bits (317), Expect = 4.850e-29
Identity = 93/289 (32.18%), Postives = 147/289 (50.87%), Query Frame = 1
Query:   28 WIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWER--------RRLYCNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEK-QVKLLHERLGHVRDLPTVARQQGIRLSG------KLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
            W++DSG T +H+T +   F    + ++ PI   +   +   G+GD+  +    +  IR    N F VP  + ++LSV ++VS G    F  +R        RR+    + IP  H   K Y +R+      +V+ A  A E+ +++  H+RLGHV D      Q    + G      K   C AC  GK S++   K  + +T E LE+VHTD+ GP+  +S  G R+ ++ +DD++ M  VY ++QKSE     K F+  V + +   IK LRSD GGE+T + F +F
Sbjct:  319 WLVDSGAT-NHMTKEESYFSKLDRSIKVPIKIGNGSTVMTAGKGDITVMTKGGKKTIR----NVFLVPGLAKNLLSVPQIVSSGYRVSFQEKRCIIDDAKGRRI----MDIPMTH---KSYRIRM---SSAQVEEALSASEQGKMETWHKRLGHVGDKRLQQMQDKDLVKGLPKFKVKKEACEACRLGKQSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSVDGSRYFLLFLDDHTHMCWVYFMKQKSETFSLFKKFKAMVEKQSDCTIKTLRSDGGGEFTSREFNRF 592          
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: A0A6D2HJM6_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJM6_9BRAS)

HSP 1 Score: 126 bits (317), Expect = 4.850e-29
Identity = 90/281 (32.03%), Postives = 144/281 (51.25%), Query Frame = 1
Query:   28 WIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRLY-CNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQVKLLHERLGHVRDLPTVARQQGIRLSG------KLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPV-DKSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
            W++DSGCT +H+T +   F    + V+ PI   +   +   G+GD+   + T  G  + +  N F VP    ++LSV ++ S G +  F  +R  ++  NG  I     + K + +++     VE +A    +  + +  H+RLGHV        Q    + G      +   C AC  GK S++   K  + +T E LE+VHTD+ GP+ ++S  G R+ ++ +DDY+ M  VY L+QKSE     K F+  V + +G  IK LRSD GGE+T   F +F
Sbjct:  326 WLVDSGCT-NHMTKEERYFSSINKSVKVPIRVGNGDIVMTVGKGDI--TVMTNHG--KRIIKNVFLVPGLEKNLLSVPQIFSSGYQVRFEDKRCIIHDANGKKIMDIGMTNKSFKIKL---SSVEEEAMTANVHME-ETWHKRLGHVGKRRLQEMQDKDLVKGLPSFKVEKEACKACNLGKQSRKSFPKESQTKTKEKLEIVHTDVCGPMQNQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETFLKFKKFKAMVEKQSGCVIKTLRSDGGGEFTSHEFNRF 597          
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: A0A151S1T9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S1T9_CAJCA)

HSP 1 Score: 120 bits (302), Expect = 6.060e-29
Identity = 87/276 (31.52%), Postives = 149/276 (53.99%), Query Frame = 1
Query:   28 WIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRLYCNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQVKLLHERLGHVRD--LPTVARQ---QGIRLSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPF 837
            WI+DSG T  H+TP+++ F  +     G +  +++G   V G GDV   + T  G ++++     + P+   +++SV+ +   G + +FG  + +L    + +     + K Y  + +V  +     +  A++ +  L H RL H+ +  L  +A++   QG++ S +L  CS C  GK ++   KK+   R +E L+LVH+D+ GP+  KSF G  + +I +DD SR   VY L++K + L   K F   V R +G  +KR+R+D GGEY G PF
Sbjct:    2 WIVDSGAT-LHVTPRKEFFTSYTSGDFGVLKMSNDGVSKVIGVGDV--CLQTNMG-MQLLLRGVKHAPDVRFNLISVQILDDGGYDNHFGSGKWKLTKGNLVVAKGEKNSKLYWTKALVAKD-----SVNAMDMEASLWHRRLSHISEKGLNCLAQKDVLQGLK-SAELEKCSHCMAGKQTRVSFKKHPPSRKSELLQLVHSDVCGPLKVKSFSGALYFVIFIDDCSRKLWVYTLQRKDQVLERFKQFHALVERQSGKKLKRIRTDNGGEYCG-PF 266          
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: A0A151QP37_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QP37_CAJCA)

HSP 1 Score: 124 bits (312), Expect = 2.060e-28
Identity = 91/287 (31.71%), Postives = 150/287 (52.26%), Query Frame = 1
Query:   28 WIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRLYCNGITIPFEHTSR-------KEYSLRVIVGDEVEVQAAKRAIEKQVKLLHERLGHV--RDLPTVARQQGIR----LSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
            W +DSG + +H+  +R +F    + V+G +A  DE  + VEG+G+V  LI    G  + +  N +YVP    +ILS+ +++ +G +        +L  N ++I  ++TSR           + V+       Q  K   + Q  L H R GH+  + L  ++++  +R    ++    VC  C  GK  +    K  + R  +PLEL+HTD+ GP+  +S G   + +  +DD+SR   VY L++KSE     K F+  V + NGL IK LRSD+GGE+T K F+++
Sbjct:  268 WYLDSGAS-NHMCGKRSMFVELDESVKGNVAFGDESKVAVEGKGNV--LIRLKNGEHQFI-SNVYYVPSMKSNILSLGQLLEKGYDI-------QLKNNNLSIR-DNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKMCYKDQSWLWHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKESDSRAQKPLELIHTDVCGPIKPRSLGKSNYFLFFIDDFSRKTWVYFLKEKSEVFENFKKFKDNVEKENGLLIKALRSDRGGEFTSKEFQKY 542          
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Match: Q9M197_ARATH (Copia-type reverse transcriptase-like protein n=6 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9M197_ARATH)

HSP 1 Score: 124 bits (310), Expect = 4.060e-28
Identity = 87/295 (29.49%), Postives = 154/295 (52.20%), Query Frame = 1
Query:    4 ESSKSHVHWIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVEGQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGWERRRLYCNGITIPFEHTS-------RKEYSLRVIVGDEVEVQAAKRAIEKQVKLLHERLGHVR--DLPTVARQQGIR----LSGKLGVCSACEKGKASKQPVKKYREERTTEPLELVHTDIAGPVD-KSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKLFERGVARANGLWIKRLRSDQGGEYTGKPFRQF 846
            E  ++H  W +DSG + +H+  ++ +F    + VRG +A  DE  ++V+G+G++  LI    G  + +  N +Y+P    +ILS+ +++ +G +        RL  N ++I  + ++        K     + + +++  Q  K   +++  L H R GH+    L  ++R++ +R    ++    VC  C  G   K    K    R  +PLEL+HTD+ GP+  KS G   + ++ +DD+SR   VY L++KSE     K F+  V + +GL IK +RSD GGE+T K F ++
Sbjct:  328 EQEENHK-WYLDSGAS-NHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNI--LIRLKNGDHQFI-SNVYYIPSMKTNILSLGQLLEKGYDI-------RLKDNNLSIRDKESNLITKVPMSKNRMFVLNIRNDI-AQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKY 609          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47293.11754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A251T6N3_HELAN4.940e-3132.42Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A251TN47_HELAN7.770e-3032.98Putative zinc finger, CCHC-type n=2 Tax=Helianthus... [more]
A0A251SDS7_HELAN1.690e-2932.53Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
UPI001652EAC11.950e-2932.53uncharacterized protein LOC110906461 n=1 Tax=Helia... [more]
A0A1X7SX46_AMPQE3.010e-2933.33Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI00142E428A4.850e-2932.18uncharacterized protein LOC108871170 n=2 Tax=Brass... [more]
A0A6D2HJM6_9BRAS4.850e-2932.03Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A151S1T9_CAJCA6.060e-2931.52Retrovirus-related Pol polyprotein from transposon... [more]
A0A151QP37_CAJCA2.060e-2831.71Retrovirus-related Pol polyprotein from transposon... [more]
Q9M197_ARATH4.060e-2829.49Copia-type reverse transcriptase-like protein n=6 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47293contigH-paniculata_contig47293:544..1464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue4.3e-30
Seed eggNOG ortholog67593.Physo140665
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size846
Cds size846
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930405.9903722-CDS-H-paniculata_contig47293:543..9811622930405.9903722-CDS-H-paniculata_contig47293:543..981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47293 544..981 +
1691481277.2860258-CDS-H-paniculata_contig47293:543..9811691481277.2860258-CDS-H-paniculata_contig47293:543..981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47293 544..981 +
1622930406.004047-CDS-H-paniculata_contig47293:1056..14641622930406.004047-CDS-H-paniculata_contig47293:1056..1464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47293 1057..1464 +
1691481277.2995377-CDS-H-paniculata_contig47293:1056..14641691481277.2995377-CDS-H-paniculata_contig47293:1056..1464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig47293 1057..1464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47293.11754.1prot_H-paniculata_contig47293.11754.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig47293 544..1464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig47293.11754.1

>prot_H-paniculata_contig47293.11754.1 ID=prot_H-paniculata_contig47293.11754.1|Name=mRNA_H-paniculata_contig47293.11754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp
MESSKSHVHWIIDSGCTGHHLTPQRDLFQIFRQVVRGPIAAADEGGLDVE
GQGDVEGLIWTAEGAIRIVFCNAFYVPEASDSILSVERMVSQGMEAYFGW
ERRRLYCNGITIPFEHTSRKEYSLRVIVGDEVEVQAAKRAIEKQVKLLHE
RLGHVRDLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYREERTTEP
LELVHTDIAGPVDKSFGGCRFAIISVDDYSRMRKVYILRQKSEALWALKL
FERGVARANGLWIKRLRSDQGGEYTGKPFRQF
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mRNA from alignment at H-paniculata_contig47293:544..1464+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig47293.11754.1 ID=mRNA_H-paniculata_contig47293.11754.1|Name=mRNA_H-paniculata_contig47293.11754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=921bp|location=Sequence derived from alignment at H-paniculata_contig47293:544..1464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTCATCTAAATCGCACGTACACTGGATAATTGATTCGGGCTGCAC CGGACATCACCTGACCCCGCAACGCGACCTCTTTCAAATTTTTCGCCAGG TCGTACGTGGTCCCATTGCCGCAGCGGACGAGGGGGGGTTGGATGTAGAG GGGCAAGGAGACGTGGAAGGTTTAATTTGGACTGCGGAAGGAGCCATTCG CATCGTCTTCTGCAATGCATTTTATGTACCTGAAGCATCAGACAGTATTT TATCGGTTGAGCGGATGGTGAGCCAAGGGATGGAGGCGTATTTTGGTTGG GAACGGAGACGGTTGTATTGTAATGGGATAACGATCCCGTTCGAACACAC ATCGCGAAAGGAGTATTCATTGCGTGTGATAGTGGGGGACGAAGTGGAGG TGCAGGCTGCAAAACGGGCCATCGAAAAACAAGTGAAAGTTCTTCGATTA TTCAGCAACGACTGCACCACCCCGAAGAACAATGAGAAGAGGCAACAGGT GGCGGACACCAAGTTACTACACGAGCGACTTGGGCATGTTCGAGACCTTC CCACAGTCGCGCGGCAACAAGGCATACGATTAAGCGGTAAGCTCGGTGTC TGCTCGGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCTGTAAAAAAGTA TCGAGAAGAGCGGACGACCGAGCCGTTGGAGCTGGTTCACACCGACATAG CCGGACCGGTGGACAAGTCCTTCGGAGGATGTCGCTTCGCCATAATCTCC GTCGACGACTACAGCAGAATGCGCAAAGTCTATATCTTGCGACAAAAGTC GGAGGCGCTGTGGGCCCTGAAGCTATTCGAGAGGGGCGTGGCGAGGGCAA ACGGTTTGTGGATTAAGCGCCTTCGGTCGGATCAGGGAGGAGAATATACT GGGAAGCCTTTTAGGCAATTC
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Coding sequence (CDS) from alignment at H-paniculata_contig47293:544..1464+

>mRNA_H-paniculata_contig47293.11754.1 ID=mRNA_H-paniculata_contig47293.11754.1|Name=mRNA_H-paniculata_contig47293.11754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig47293:544..1464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTCATCTAAATCGCACGTACACTGGATAATTGATTCGGGCTGCAC
CGGACATCACCTGACCCCGCAACGCGACCTCTTTCAAATTTTTCGCCAGG
TCGTACGTGGTCCCATTGCCGCAGCGGACGAGGGGGGGTTGGATGTAGAG
GGGCAAGGAGACGTGGAAGGTTTAATTTGGACTGCGGAAGGAGCCATTCG
CATCGTCTTCTGCAATGCATTTTATGTACCTGAAGCATCAGACAGTATTT
TATCGGTTGAGCGGATGGTGAGCCAAGGGATGGAGGCGTATTTTGGTTGG
GAACGGAGACGGTTGTATTGTAATGGGATAACGATCCCGTTCGAACACAC
ATCGCGAAAGGAGTATTCATTGCGTGTGATAGTGGGGGACGAAGTGGAGG
TGCAGGCTGCAAAACGGGCCATCGAAAAACAAGTGAAAATGGAGTCATCT
AAATCGCACGTACACTGGATAATTGATTCGGGCTGCACCGGACATCACCT
GACCCCGCAACGCGACCTCTTTCAAATTTTTCGCCAGGTCGTACGTGGTC
CCATTGCCGCAGCGGACGAGGGGGGGTTGGATGTAGAGGGGCAAGGAGAC
GTGGAAGGTTTAATTTGGACTGCGGAAGGAGCCATTCGCATCGTCTTCTG
CAATGCATTTTATGTACCTGAAGCATCAGACAGTATTTTATCGGTTGAGC
GGATGGTGAGCCAAGGGATGGAGGCGTATTTTGGTTGGGAACGGAGACGG
TTGTATTGTAATGGGATAACGATCCCGTTCGAACACACATCGCGAAAGGA
GTATTCATTGCGTGTGATAGTGGGGGACGAAGTGGAGGTGCAGGCTGCAA
AACGGGCCATCGAAAAACAAGTGAAATTACTACACGAGCGACTTGGGCAT
GTTCGAGACCTTCCCACAGTCGCGCGGCAACAAGGCATACGATTAAGCGG
TAAGCTCGGTGTCTGCTCGGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGC
CTGTAAAAAAGTATCGAGAAGAGCGGACGACCGAGCCGTTGGAGCTGGTT
CACACCGACATAGCCGGACCGGTGGACAAGTCCTTCGGAGGATGTCGCTT
CGCCATAATCTCCGTCGACGACTACAGCAGAATGCGCAAAGTCTATATCT
TGCGACAAAAGTCGGAGGCGCTGTGGGCCCTGAAGCTATTCGAGAGGGGC
GTGGCGAGGGCAAACGGTTTGTGGATTAAGCGCCTTCGGTCGGATCAGGG
AGGAGAATATACTGGGAAGCCTTTTAGGCAATTCTTACTACACGAGCGAC
TTGGGCATGTTCGAGACCTTCCCACAGTCGCGCGGCAACAAGGCATACGA
TTAAGCGGTAAGCTCGGTGTCTGCTCGGCGTGTGAGAAGGGGAAAGCGTC
GAAGCAGCCTGTAAAAAAGTATCGAGAAGAGCGGACGACCGAGCCGTTGG
AGCTGGTTCACACCGACATAGCCGGACCGGTGGACAAGTCCTTCGGAGGA
TGTCGCTTCGCCATAATCTCCGTCGACGACTACAGCAGAATGCGCAAAGT
CTATATCTTGCGACAAAAGTCGGAGGCGCTGTGGGCCCTGAAGCTATTCG
AGAGGGGCGTGGCGAGGGCAAACGGTTTGTGGATTAAGCGCCTTCGGTCG
GATCAGGGAGGAGAATATACTGGGAAGCCTTTTAGGCAATTC
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