prot_H-paniculata_contig47.11702.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig47.11702.1
Unique Nameprot_H-paniculata_contig47.11702.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length972
Homology
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BLAST of mRNA_H-paniculata_contig47.11702.1 vs. uniprot
Match: D8LCK1_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK1_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 9.810e-55
Identity = 146/188 (77.66%), Postives = 161/188 (85.64%), Query Frame = 0 
Query:  784 KRKKKAALEDALDSTVLGDLWFERGELREARHEHLRALKIRTARLPVGHPDVAESLESLGNVAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQPGKLGEAEAVCAHALSIVEHNREAGAETPHLMAALLKLQSKILKRQGRRTEAAELRARALTVMQQVESTTPRTSTKALDP 971
            ++K K AL DALDST+LGDLWFERGEL+EAR+EHLRAL+IR+ARLP GHPD+AESLESLGNVAI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQ GKL EAEAVCAHA+SIVE N   G  TPHLMAALLKLQSKILKRQGRR EAA LRARA+ ++++  +  P   T    P
Sbjct:  116 QQKSKTALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLPEAEAVCAHAMSIVEVNDSQGHNTPHLMAALLKLQSKILKRQGRRPEAASLRARAVAILEEAAAAVPGGGTTTAAP 303
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BLAST of mRNA_H-paniculata_contig47.11702.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.320e-46
Identity = 135/173 (78.03%), Postives = 149/173 (86.13%), Query Frame = 0 
Query:  784 KRKKKAALEDALDSTVLGDLWFERGELREARHEHLRALKIRTARLPVGHPDVAESLESLGNVAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQPGKLGEAEAVCAHALSIVEHNREAGAETPHLMAALLKLQSKILKRQGRRTEAAELRARALTVMQQ 956
            ++K K AL DALDST+ GD WFERGEL+EAR+EHLRAL+IR+ARLP GHPD+AESLESLGNVAI      XXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQ GKL EAEAVCAHA+SIVE     G  TPHLMAALLKLQSKILKRQGRR EAA LRARA+ ++++
Sbjct: 1561 QQKSKTALADALDSTIRGDQWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIREGNHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLSEAEAVCAHAMSIVEVKDSQGHNTPHLMAALLKLQSKILKRQGRRPEAASLRARAVAILEE 1733
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47.11702.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCK1_ECTSI9.810e-5577.66Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
A0A6H5JQC7_9PHAE1.320e-4678.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 796..969
e-value: 4.1E-33
score: 116.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 797..944
NoneNo IPR availablePFAMPF13424TPR_12coord: 834..909
e-value: 9.9E-12
score: 45.0
NoneNo IPR availablePANTHERPTHR45783FAMILY NOT NAMEDcoord: 778..956
NoneNo IPR availablePANTHERPTHR45783:SF3KINESIN LIGHT CHAINcoord: 778..956
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..971
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..15
score: 0.487

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig47contigH-paniculata_contig47:48394..58093 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig47.11702.1mRNA_H-paniculata_contig47.11702.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig47 48233..60746 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig47.11702.1 ID=prot_H-paniculata_contig47.11702.1|Name=mRNA_H-paniculata_contig47.11702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=972bp
MLVSRSLLSRRAAAAAAAAAAAAAGGGGEGEGGGSGGGGGGGTGNVGDEG
NSGGGDDDGASSSTQKRPSYSAVSSSEENGQNGEISSGGKGGRGALRVSP
PTLEKQLLTGVVGAAPSPAPAPAPHRSNRPRTVSVGTVGSGDEGDDEDER
YTMHSLQAAYVRSTARQRLDLIKTLPARRDAAVAVVKRDTTGGAGIVRGA
DGVAGSGPGRPGFRDASLPDRYTRSAASSPLSGGATSVGYSDAYSSSGSA
ALATLNNPPFGGSSSVGMPYTPSAAANSTLSTSGGRRRRSPAGAAAAAAA
AAKRAAGNGYGRGSAYGSSGASGSDTGNAFGDDELVKGSRVLGQLPNIAG
KKMIVPGGNRGRRADRDGSETGSDAGDTSIEPYPKRPDLPSGATAAAAAA
TARSTKQNGGHKDEQQPVAWAWPGTASTAAASRNGSSGTSGILPRVAIPS
KPLPPYTPGSGGETGSDFGGDGVGHRSSSKESNSGRTRAGSGTSGGSGSL
VGAGVAALRGKGSGETASAAAGGGGGGDAKFSPSGRSRGKGYNRQGTPSR
GERGSEHRQSEAGERSSTKRATPFRGQRGAKKEDGDGDGSVGTPAEVGVS
GTSNTENRKSEHPPRSPRTSGSVSVSTNYSSGGSADKTMSGGGRISVSST
RERLSSGGIASKGAASSIAATSVVTSDGSAGGYVSSNGTGASSDEHGLIV
RDFAAGAGTSSSGWEKSDDDSDERKRRRRRRRARREFDKKTGGGVGASVG
GDDSGGGASGTETINTSGGESSKSDTRRGKNAEKRKKKAALEDALDSTVL
GDLWFERGELREARHEHLRALKIRTARLPVGHPDVAESLESLGNVAIREG
SHLEAEGLHRKALEMRMEALGPDHMDVAATLNNLAVSLKGQPGKLGEAEA
VCAHALSIVEHNREAGAETPHLMAALLKLQSKILKRQGRRTEAAELRARA
LTVMQQVESTTPRTSTKALDP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf