mRNA_H-paniculata_contig47.11702.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig47.11702.1 vs. uniprot
Match: D8LCK1_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK1_ECTSI) HSP 1 Score: 204 bits (518), Expect = 1.020e-54 Identity = 146/188 (77.66%), Postives = 161/188 (85.64%), Query Frame = 3
Query: 2511 KRKKKAALEDALDSTVLGDLWFERGELREARHEHLRALKIRTARLPVGHPDVAESLESLGNVAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQPGKLGEAEAVCAHALSIVEHNREAGAETPHLMAALLKLQSKILKRQGRRTEAAELRARALTVMQQVESTTPRTSTKALDP 3074
++K K AL DALDST+LGDLWFERGEL+EAR+EHLRAL+IR+ARLP GHPD+AESLESLGNVAI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQ GKL EAEAVCAHA+SIVE N G TPHLMAALLKLQSKILKRQGRR EAA LRARA+ ++++ + P T P
Sbjct: 116 QQKSKTALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLPEAEAVCAHAMSIVEVNDSQGHNTPHLMAALLKLQSKILKRQGRRPEAASLRARAVAILEEAAAAVPGGGTTTAAP 303
BLAST of mRNA_H-paniculata_contig47.11702.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE) HSP 1 Score: 194 bits (492), Expect = 9.290e-46 Identity = 135/174 (77.59%), Postives = 149/174 (85.63%), Query Frame = 3
Query: 2511 KRKKKAALEDALDSTVLGDLWFERGELREARHEHLRALKIRTARLPVGHPDVAESLESLGNVAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQPGKLGEAEAVCAHALSIVEHNREAGAETPHLMAALLKLQSKILKRQGRRTEAAELRARALTVMQQV 3032
++K K AL DALDST+ GD WFERGEL+EAR+EHLRAL+IR+ARLP GHPD+AESLESLGNVAI XXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQ GKL EAEAVCAHA+SIVE G TPHLMAALLKLQSKILKRQGRR EAA LRARA+ ++++
Sbjct: 1561 QQKSKTALADALDSTIRGDQWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIREGNHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNLAVSLKGQAGKLSEAEAVCAHAMSIVEVKDSQGHNTPHLMAALLKLQSKILKRQGRRPEAASLRARAVAILEEA 1734 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig47.11702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig47.11702.1 >prot_H-paniculata_contig47.11702.1 ID=prot_H-paniculata_contig47.11702.1|Name=mRNA_H-paniculata_contig47.11702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=972bp MLVSRSLLSRRAAAAAAAAAAAAAGGGGEGEGGGSGGGGGGGTGNVGDEGback to top mRNA from alignment at H-paniculata_contig47:48233..60746+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig47.11702.1 ID=mRNA_H-paniculata_contig47.11702.1|Name=mRNA_H-paniculata_contig47.11702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12514bp|location=Sequence derived from alignment at H-paniculata_contig47:48233..60746+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig47:48233..60746+ >mRNA_H-paniculata_contig47.11702.1 ID=mRNA_H-paniculata_contig47.11702.1|Name=mRNA_H-paniculata_contig47.11702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5832bp|location=Sequence derived from alignment at H-paniculata_contig47:48233..60746+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |