mRNA_H-paniculata_contig46940.11686.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: D1J767_ECTSI (50S ribosomal protein L19, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J767_ECTSI) HSP 1 Score: 244 bits (622), Expect = 2.450e-81 Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1
Query: 22 MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK
Sbjct: 1 MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A1I9LVW4_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW4_9PHAE) HSP 1 Score: 227 bits (579), Expect = 1.150e-74 Identity = 116/137 (84.67%), Postives = 130/137 (94.89%), Query Frame = 1
Query: 1 ILRNKKRMNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
ILRNKK MN++ + +K F+NNRFIESVEKV+IKKNLKKLFVGDTVK+GVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIG+ERAFLVNSPK ASIE++KS+R+R+SKLYYLRNIIGKAGRLK+R KKK
Sbjct: 2 ILRNKKLMNFQNLMAIKIFINNRFIESVEKVHIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFASIEVIKSSRIRRSKLYYLRNIIGKAGRLKERFKKK 138
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A6B7EVN0_9PHAE (50S ribosomal protein L19 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVN0_9PHAE) HSP 1 Score: 211 bits (536), Expect = 3.160e-68 Identity = 108/130 (83.08%), Postives = 121/130 (93.08%), Query Frame = 1
Query: 22 MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
M++ + +K FMNNRFI+SVEKV++KK+LKKLFVGDTVK+GVFVEEGNKERVQFYEGIILAKSKSCINFTIS+RKVFQGIG+ERAFLVNSPK ASIE+LKS+RV KSKLYYLRNIIGKAGRLKQR KK
Sbjct: 1 MSFTNLIPIKKFMNNRFIKSVEKVHMKKDLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISIRKVFQGIGVERAFLVNSPKFASIEVLKSSRVSKSKLYYLRNIIGKAGRLKQRFNKK 130
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A7T8JK70_SCYLO (50S ribosomal protein L19, chloroplastic n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK70_SCYLO) HSP 1 Score: 206 bits (525), Expect = 2.700e-66 Identity = 106/136 (77.94%), Postives = 124/136 (91.18%), Query Frame = 1
Query: 4 LRNKKRMNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
+RNKK M+++ + ++ FMNN+ IESVE+V++K+NLK+LFVGDTVK+G+ VEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIG+ERAFLVNSPK SIE+LKSARV KSKLYYLRNIIGKAGRLKQ KK+
Sbjct: 13 IRNKKLMSFRSLVTLERFMNNKLIESVEQVHMKENLKELFVGDTVKVGISVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFVSIEVLKSARVSKSKLYYLRNIIGKAGRLKQSFKKR 148
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A0R6LUN6_UNDPI (50S ribosomal protein L19, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN6_UNDPI) HSP 1 Score: 167 bits (424), Expect = 3.400e-51 Identity = 84/121 (69.42%), Postives = 106/121 (87.60%), Query Frame = 1
Query: 52 TFMNNR-FIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
TF+N++ I+SVE V+IKKNL K+FVGDTVKIGVF++EGNKER+Q+Y+GIIL K+ S IN TISVRKVFQGIG+ER FL++SPK SIE++KS+RVR+SKLYYLR+I+GK RLKQR + K
Sbjct: 8 TFLNDKELIDSVESVHIKKNLSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGINLTISVRKVFQGIGVERNFLIHSPKFESIEVIKSSRVRRSKLYYLRSIVGKGSRLKQRFRTK 128
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A8F0JYX3_9PHAE (Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYX3_9PHAE) HSP 1 Score: 166 bits (421), Expect = 1.040e-50 Identity = 86/132 (65.15%), Postives = 108/132 (81.82%), Query Frame = 1
Query: 16 KRMNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
K + KR S++ T + ++SVE Y KKNL ++FVGDT+K+GVF++EGNKERVQ+Y+GIIL K+ S IN TISVRKVFQGIG+ER FLV+SPKL SIE++KS+RVR+SKLYYLRNIIGK RLKQR + K
Sbjct: 2 KNLKLKRPSVLST---KKIMDSVESAYKKKNLSQIFVGDTIKVGVFIKEGNKERVQYYQGIILGKNNSGINLTISVRKVFQGIGVERKFLVHSPKLESIEVIKSSRVRRSKLYYLRNIIGKGSRLKQRFRTK 130
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A8F0F7M0_9PHAE (Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7M0_9PHAE) HSP 1 Score: 159 bits (401), Expect = 1.140e-47 Identity = 77/115 (66.96%), Postives = 99/115 (86.09%), Query Frame = 1
Query: 67 RFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
+ ++ VE YIKK++ K+FVGDTVKIGVF++EGNKER+Q+Y+GIIL K+ S +N TISVRKVFQGIG+ER FL++SPK SIEI+KS+RVR+SKLYYLR+I+GK RLKQR + K
Sbjct: 16 KIMDFVESTYIKKDVSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGVNLTISVRKVFQGIGVERRFLIHSPKFESIEIIKSSRVRRSKLYYLRSIVGKGSRLKQRFRTK 130
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A141BSB2_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A141BSB2_9PHAE) HSP 1 Score: 148 bits (374), Expect = 1.650e-43 Identity = 78/123 (63.41%), Postives = 96/123 (78.05%), Query Frame = 1
Query: 46 VKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIG-KAGRLKQRVKKK 411
V + + + VE+ YIKKN+ K+FVGDTVKIGV ++EGNKER+Q+Y+GIILAK+ S IN TISVRK+FQGIGIER FL++SPK S+EI+KSARVR+SKLYYLR K RLKQR K
Sbjct: 12 VLSLSKKKILALVEQTYIKKNIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESVEIIKSARVRRSKLYYLRKTTTTKGSRLKQRFNTK 134
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A8F0FAK4_9PHAE (Ribosomal protein L19 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAK4_9PHAE) HSP 1 Score: 147 bits (371), Expect = 4.170e-43 Identity = 73/117 (62.39%), Postives = 94/117 (80.34%), Query Frame = 1
Query: 61 NNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
+ + I VE+ KK++ K+FVGDTVKIG+ ++EGNKER+Q+Y+GIIL K S IN ISVRKVFQGIG+ER FL++SPK SI ++KS+RVR+SKLYYLRNIIGK RLK+R + K
Sbjct: 14 SEKIINLVEEAQKKKDIPKIFVGDTVKIGILIKEGNKERIQYYQGIILGKKNSGINLMISVRKVFQGIGVERNFLIHSPKFESITVIKSSRVRRSKLYYLRNIIGKKSRLKERFRNK 130
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A7S6UA05_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA05_9STRA) HSP 1 Score: 146 bits (369), Expect = 6.980e-43 Identity = 76/120 (63.33%), Postives = 94/120 (78.33%), Query Frame = 1
Query: 40 SIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQR 399
+ V TF N I+SVE Y K +L LF+GDTVKIGV ++EG KER+Q+Y+GII+AK + IN TI VR+V QGIG+ER FL++SPKL SIEI +S+RVRKSKLYYLR + GKA RLKQR
Sbjct: 3 NFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLQGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQR 122 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig46940.11686.1 >prot_H-paniculata_contig46940.11686.1 ID=prot_H-paniculata_contig46940.11686.1|Name=mRNA_H-paniculata_contig46940.11686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKback to top mRNA from alignment at H-paniculata_contig46940:1017..1430- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig46940.11686.1 ID=mRNA_H-paniculata_contig46940.11686.1|Name=mRNA_H-paniculata_contig46940.11686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=414bp|location=Sequence derived from alignment at H-paniculata_contig46940:1017..1430- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig46940:1017..1430- >mRNA_H-paniculata_contig46940.11686.1 ID=mRNA_H-paniculata_contig46940.11686.1|Name=mRNA_H-paniculata_contig46940.11686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig46940:1017..1430- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |