mRNA_H-paniculata_contig46940.11686.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46940.11686.1
Unique NamemRNA_H-paniculata_contig46940.11686.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: D1J767_ECTSI (50S ribosomal protein L19, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J767_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 2.450e-81
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1
Query:   22 MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
            MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK
Sbjct:    1 MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130          
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A1I9LVW4_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW4_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 1.150e-74
Identity = 116/137 (84.67%), Postives = 130/137 (94.89%), Query Frame = 1
Query:    1 ILRNKKRMNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
            ILRNKK MN++ +  +K F+NNRFIESVEKV+IKKNLKKLFVGDTVK+GVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIG+ERAFLVNSPK ASIE++KS+R+R+SKLYYLRNIIGKAGRLK+R KKK
Sbjct:    2 ILRNKKLMNFQNLMAIKIFINNRFIESVEKVHIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFASIEVIKSSRIRRSKLYYLRNIIGKAGRLKERFKKK 138          
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A6B7EVN0_9PHAE (50S ribosomal protein L19 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVN0_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 3.160e-68
Identity = 108/130 (83.08%), Postives = 121/130 (93.08%), Query Frame = 1
Query:   22 MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
            M++  +  +K FMNNRFI+SVEKV++KK+LKKLFVGDTVK+GVFVEEGNKERVQFYEGIILAKSKSCINFTIS+RKVFQGIG+ERAFLVNSPK ASIE+LKS+RV KSKLYYLRNIIGKAGRLKQR  KK
Sbjct:    1 MSFTNLIPIKKFMNNRFIKSVEKVHMKKDLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISIRKVFQGIGVERAFLVNSPKFASIEVLKSSRVSKSKLYYLRNIIGKAGRLKQRFNKK 130          
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A7T8JK70_SCYLO (50S ribosomal protein L19, chloroplastic n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK70_SCYLO)

HSP 1 Score: 206 bits (525), Expect = 2.700e-66
Identity = 106/136 (77.94%), Postives = 124/136 (91.18%), Query Frame = 1
Query:    4 LRNKKRMNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
            +RNKK M+++ +  ++ FMNN+ IESVE+V++K+NLK+LFVGDTVK+G+ VEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIG+ERAFLVNSPK  SIE+LKSARV KSKLYYLRNIIGKAGRLKQ  KK+
Sbjct:   13 IRNKKLMSFRSLVTLERFMNNKLIESVEQVHMKENLKELFVGDTVKVGISVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFVSIEVLKSARVSKSKLYYLRNIIGKAGRLKQSFKKR 148          
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A0R6LUN6_UNDPI (50S ribosomal protein L19, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN6_UNDPI)

HSP 1 Score: 167 bits (424), Expect = 3.400e-51
Identity = 84/121 (69.42%), Postives = 106/121 (87.60%), Query Frame = 1
Query:   52 TFMNNR-FIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
            TF+N++  I+SVE V+IKKNL K+FVGDTVKIGVF++EGNKER+Q+Y+GIIL K+ S IN TISVRKVFQGIG+ER FL++SPK  SIE++KS+RVR+SKLYYLR+I+GK  RLKQR + K
Sbjct:    8 TFLNDKELIDSVESVHIKKNLSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGINLTISVRKVFQGIGVERNFLIHSPKFESIEVIKSSRVRRSKLYYLRSIVGKGSRLKQRFRTK 128          
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A8F0JYX3_9PHAE (Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYX3_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.040e-50
Identity = 86/132 (65.15%), Postives = 108/132 (81.82%), Query Frame = 1
Query:   16 KRMNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
            K +  KR S++ T    + ++SVE  Y KKNL ++FVGDT+K+GVF++EGNKERVQ+Y+GIIL K+ S IN TISVRKVFQGIG+ER FLV+SPKL SIE++KS+RVR+SKLYYLRNIIGK  RLKQR + K
Sbjct:    2 KNLKLKRPSVLST---KKIMDSVESAYKKKNLSQIFVGDTIKVGVFIKEGNKERVQYYQGIILGKNNSGINLTISVRKVFQGIGVERKFLVHSPKLESIEVIKSSRVRRSKLYYLRNIIGKGSRLKQRFRTK 130          
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A8F0F7M0_9PHAE (Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7M0_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.140e-47
Identity = 77/115 (66.96%), Postives = 99/115 (86.09%), Query Frame = 1
Query:   67 RFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
            + ++ VE  YIKK++ K+FVGDTVKIGVF++EGNKER+Q+Y+GIIL K+ S +N TISVRKVFQGIG+ER FL++SPK  SIEI+KS+RVR+SKLYYLR+I+GK  RLKQR + K
Sbjct:   16 KIMDFVESTYIKKDVSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGVNLTISVRKVFQGIGVERRFLIHSPKFESIEIIKSSRVRRSKLYYLRSIVGKGSRLKQRFRTK 130          
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A141BSB2_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A141BSB2_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.650e-43
Identity = 78/123 (63.41%), Postives = 96/123 (78.05%), Query Frame = 1
Query:   46 VKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIG-KAGRLKQRVKKK 411
            V +    + +  VE+ YIKKN+ K+FVGDTVKIGV ++EGNKER+Q+Y+GIILAK+ S IN TISVRK+FQGIGIER FL++SPK  S+EI+KSARVR+SKLYYLR     K  RLKQR   K
Sbjct:   12 VLSLSKKKILALVEQTYIKKNIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESVEIIKSARVRRSKLYYLRKTTTTKGSRLKQRFNTK 134          
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A8F0FAK4_9PHAE (Ribosomal protein L19 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAK4_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.170e-43
Identity = 73/117 (62.39%), Postives = 94/117 (80.34%), Query Frame = 1
Query:   61 NNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 411
            + + I  VE+   KK++ K+FVGDTVKIG+ ++EGNKER+Q+Y+GIIL K  S IN  ISVRKVFQGIG+ER FL++SPK  SI ++KS+RVR+SKLYYLRNIIGK  RLK+R + K
Sbjct:   14 SEKIINLVEEAQKKKDIPKIFVGDTVKIGILIKEGNKERIQYYQGIILGKKNSGINLMISVRKVFQGIGVERNFLIHSPKFESITVIKSSRVRRSKLYYLRNIIGKKSRLKERFRNK 130          
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Match: A0A7S6UA05_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA05_9STRA)

HSP 1 Score: 146 bits (369), Expect = 6.980e-43
Identity = 76/120 (63.33%), Postives = 94/120 (78.33%), Query Frame = 1
Query:   40 SIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQR 399
            + V TF  N  I+SVE  Y K +L  LF+GDTVKIGV ++EG KER+Q+Y+GII+AK  + IN TI VR+V QGIG+ER FL++SPKL SIEI +S+RVRKSKLYYLR + GKA RLKQR
Sbjct:    3 NFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLQGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQR 122          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46940.11686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J767_ECTSI2.450e-81100.0050S ribosomal protein L19, chloroplastic n=2 Tax=E... [more]
A0A1I9LVW4_9PHAE1.150e-7484.6750S ribosomal protein L19, chloroplastic n=1 Tax=P... [more]
A0A6B7EVN0_9PHAE3.160e-6883.0850S ribosomal protein L19 n=1 Tax=Cladosiphon okam... [more]
A0A7T8JK70_SCYLO2.700e-6677.9450S ribosomal protein L19, chloroplastic n=5 Tax=S... [more]
A0A0R6LUN6_UNDPI3.400e-5169.4250S ribosomal protein L19, chloroplastic n=25 Tax=... [more]
A0A8F0JYX3_9PHAE1.040e-5065.15Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxI... [more]
A0A8F0F7M0_9PHAE1.140e-4766.96Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2... [more]
A0A141BSB2_9PHAE1.650e-4363.4150S ribosomal protein L19, chloroplastic n=1 Tax=S... [more]
A0A8F0FAK4_9PHAE4.170e-4362.39Ribosomal protein L19 n=1 Tax=Desmarestia aculeata... [more]
A0A7S6UA05_9STRA6.980e-4363.3350S ribosomal protein L19, chloroplastic n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46940contigH-paniculata_contig46940:1017..1430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.3
Seed ortholog evalue4e-63
Seed eggNOG ortholog2880.D1J767
Preferred namerpl19
KEGG koko:K02884
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0335@1,KOG1698@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size414
Cds size393
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930397.4879062-CDS-H-paniculata_contig46940:1016..14091622930397.4879062-CDS-H-paniculata_contig46940:1016..1409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46940 1017..1409 -
1691481273.1677818-CDS-H-paniculata_contig46940:1016..14091691481273.1677818-CDS-H-paniculata_contig46940:1016..1409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46940 1017..1409 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930397.5011575-UTR-H-paniculata_contig46940:1409..14301622930397.5011575-UTR-H-paniculata_contig46940:1409..1430Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46940 1410..1430 -
1691481273.1870005-UTR-H-paniculata_contig46940:1409..14301691481273.1870005-UTR-H-paniculata_contig46940:1409..1430Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46940 1410..1430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46940.11686.1prot_H-paniculata_contig46940.11686.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46940 1017..1409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46940.11686.1

>prot_H-paniculata_contig46940.11686.1 ID=prot_H-paniculata_contig46940.11686.1|Name=mRNA_H-paniculata_contig46940.11686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MNYKRISIVKTFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNK
ERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEIL
KSARVRKSKLYYLRNIIGKAGRLKQRVKKK*
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mRNA from alignment at H-paniculata_contig46940:1017..1430-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46940.11686.1 ID=mRNA_H-paniculata_contig46940.11686.1|Name=mRNA_H-paniculata_contig46940.11686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=414bp|location=Sequence derived from alignment at H-paniculata_contig46940:1017..1430- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATTAAGGAATAAAAAACGTATGAATTATAAAAGGATATCTATTGTTAA AACATTTATGAACAATCGATTTATTGAATCTGTTGAGAAAGTTTATATAA AAAAAAATTTAAAAAAATTATTCGTAGGAGACACAGTAAAAATTGGTGTT TTTGTTGAGGAAGGAAATAAAGAGCGAGTTCAATTTTATGAAGGAATTAT TCTTGCGAAAAGTAAAAGTTGTATCAATTTCACAATATCAGTTCGGAAGG TATTTCAAGGTATTGGAATTGAAAGAGCCTTCTTAGTAAATTCGCCTAAA TTAGCTTCCATTGAAATTCTTAAATCAGCTCGGGTAAGGAAATCAAAATT ATATTACTTGCGTAATATCATAGGTAAAGCTGGTCGTTTAAAACAAAGGG TTAAAAAAAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig46940:1017..1430-

>mRNA_H-paniculata_contig46940.11686.1 ID=mRNA_H-paniculata_contig46940.11686.1|Name=mRNA_H-paniculata_contig46940.11686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig46940:1017..1430- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATTATAAAAGGATATCTATTGTTAAAACATTTATGAACAATCGATT
TATTGAATCTGTTGAGAAAGTTTATATAAAAAAAAATTTAAAAAAATTAT
TCGTAGGAGACACAGTAAAAATTGGTGTTTTTGTTGAGGAAGGAAATAAA
GAGCGAGTTCAATTTTATGAAGGAATTATTCTTGCGAAAAGTAAAAGTTG
TATCAATTTCACAATATCAGTTCGGAAGGTATTTCAAGGTATTGGAATTG
AAAGAGCCTTCTTAGTAAATTCGCCTAAATTAGCTTCCATTGAAATTCTT
AAATCAGCTCGGGTAAGGAAATCAAAATTATATTACTTGCGTAATATCAT
AGGTAAAGCTGGTCGTTTAAAACAAAGGGTTAAAAAAAAATAAATGAATT
ATAAAAGGATATCTATTGTTAAAACATTTATGAACAATCGATTTATTGAA
TCTGTTGAGAAAGTTTATATAAAAAAAAATTTAAAAAAATTATTCGTAGG
AGACACAGTAAAAATTGGTGTTTTTGTTGAGGAAGGAAATAAAGAGCGAG
TTCAATTTTATGAAGGAATTATTCTTGCGAAAAGTAAAAGTTGTATCAAT
TTCACAATATCAGTTCGGAAGGTATTTCAAGGTATTGGAATTGAAAGAGC
CTTCTTAGTAAATTCGCCTAAATTAGCTTCCATTGAAATTCTTAAATCAG
CTCGGGTAAGGAAATCAAAATTATATTACTTGCGTAATATCATAGGTAAA
GCTGGTCGTTTAAAACAAAGGGTTAAAAAAAAATAA
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