mRNA_H-paniculata_contig46887.11675.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46887.11675.1
Unique NamemRNA_H-paniculata_contig46887.11675.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig46887.11675.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 3.490e-5
Identity = 23/68 (33.82%), Postives = 39/68 (57.35%), Query Frame = 3 
Query:   39 DFMLCDICTQWSQLRHGAPGVRPTQNSMALAKIEKDYIKHLRLVKADRQVIEDNTRKSIIVQGDNKPL 242
            DFM C  CT+ ++  HGAPG+RP Q++   A+I +   +H  +V  DR+++  +   +   Q +  PL
Sbjct:   51 DFMKCSDCTEINEKLHGAPGIRPIQDTRQRAEIVRHQKEHHHIVSKDRELLTSHMEAAKREQANGTPL 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46887.11675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JXN7_9PHAE3.490e-533.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46887contigH-paniculata_contig46887:252..668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size244
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46887.11675.1prot_H-paniculata_contig46887.11675.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46887 260..668 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930396.057763-UTR-H-paniculata_contig46887:251..2591622930396.057763-UTR-H-paniculata_contig46887:251..259Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46887 252..259 +
1691481272.5350423-UTR-H-paniculata_contig46887:251..2591691481272.5350423-UTR-H-paniculata_contig46887:251..259Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46887 252..259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930396.073449-CDS-H-paniculata_contig46887:259..4151622930396.073449-CDS-H-paniculata_contig46887:259..415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46887 260..415 +
1691481272.546322-CDS-H-paniculata_contig46887:259..4151691481272.546322-CDS-H-paniculata_contig46887:259..415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46887 260..415 +
1622930396.0928688-CDS-H-paniculata_contig46887:590..6681622930396.0928688-CDS-H-paniculata_contig46887:590..668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46887 591..668 +
1691481272.555893-CDS-H-paniculata_contig46887:590..6681691481272.555893-CDS-H-paniculata_contig46887:590..668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46887 591..668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46887.11675.1

>prot_H-paniculata_contig46887.11675.1 ID=prot_H-paniculata_contig46887.11675.1|Name=mRNA_H-paniculata_contig46887.11675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MGHVLIGVGLDFMLCDICTQWSQLRHGAPGVRPTQNSMALAKIEKDYIKH
LRLVKADRQVIEDNTRKSIIVQGDNKPL
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mRNA from alignment at H-paniculata_contig46887:252..668+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46887.11675.1 ID=mRNA_H-paniculata_contig46887.11675.1|Name=mRNA_H-paniculata_contig46887.11675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=417bp|location=Sequence derived from alignment at H-paniculata_contig46887:252..668+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGATGAGATGGGCCACGTCCTCATCGGGGTTGGCCTCGACTTCATGCTT
TGCGACATATGTACGCAGTGGAGCCAGCTGCGCCATGGAGCACCAGGCGT
TAGGCCCACCCAGAACTCCATGGCATTAGCCAAGATTGAGAAAGATTATA
TCAAGCACCTAAGGGTAAGTGTGGCCTGTGGGAGAAGAACGAGCGTTTTT
TGCCTTGTTTGTGTTTCTTATACCTGTTCCATTCGATTCTGGTGATTTAT
TATTGGTGACTCGCTCAATGCTGTTGTGTAATGCGTTTTTAAAAATATCA
CCCTGTCTCCTCTTCTTCTTCGTTCTTTTGTCTTTGCAGCTAGTCAAGGC
AGATCGACAGGTGATTGAGGACAATACTCGGAAAAGCATAATTGTCCAGG
GCGACAACAAGCCTCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig46887:252..668+

>mRNA_H-paniculata_contig46887.11675.1 ID=mRNA_H-paniculata_contig46887.11675.1|Name=mRNA_H-paniculata_contig46887.11675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig46887:252..668+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCCACGTCCTCATCGGGGTTGGCCTCGACTTCATGCTTTGCGACAT
ATGTACGCAGTGGAGCCAGCTGCGCCATGGAGCACCAGGCGTTAGGCCCA
CCCAGAACTCCATGGCATTAGCCAAGATTGAGAAAGATTATATCAAGCAC
CTAAGGATGGGCCACGTCCTCATCGGGGTTGGCCTCGACTTCATGCTTTG
CGACATATGTACGCAGTGGAGCCAGCTGCGCCATGGAGCACCAGGCGTTA
GGCCCACCCAGAACTCCATGGCATTAGCCAAGATTGAGAAAGATTATATC
AAGCACCTAAGGCTAGTCAAGGCAGATCGACAGGTGATTGAGGACAATAC
TCGGAAAAGCATAATTGTCCAGGGCGACAACAAGCCTCTCCTAGTCAAGG
CAGATCGACAGGTGATTGAGGACAATACTCGGAAAAGCATAATTGTCCAG
GGCGACAACAAGCCTCTC
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