mRNA_H-paniculata_contig46877.11672.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46877.11672.1
Unique NamemRNA_H-paniculata_contig46877.11672.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: A0A6H5KNK7_9PHAE (AE protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK7_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 5.570e-24
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
            P + F  +ATQVTQGTLGVIEYV+SCGLGGM YA   GQPMTFIGPTGLTL FMT+LY
Sbjct:   35 PAVAFGGIATQVTQGTLGVIEYVVSCGLGGMTYAAFGGQPMTFIGPTGLTLTFMTSLY 92          
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: D7G110_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G110_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 7.700e-22
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
            P + F  +ATQVTQGTLGVIEYV+SCGLGGM YA   GQPMTFIGPTGLTLAFMT+LY
Sbjct:  258 PAVAFGGIATQVTQGTLGVIEYVVSCGLGGMTYAAFGGQPMTFIGPTGLTLAFMTSLY 315          
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: A0A0G4H159_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H159_VITBC)

HSP 1 Score: 80.9 bits (198), Expect = 2.010e-16
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
            P + F  +A  +T G++GV E++++CG GGMAY+V SGQPMTFIGPTGLTLAF TALY
Sbjct:  214 PAVAFGGIAASITGGSMGVPEFLVACGCGGMAYSVFSGQPMTFIGPTGLTLAFTTALY 271          
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: B7FQY4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQY4_PHATC)

HSP 1 Score: 79.7 bits (195), Expect = 5.110e-16
Identity = 34/58 (58.62%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
            P + F T+A+++TQG++G++E++LS GL GMAYA++ GQPM FI PTGLTLAF++ LY
Sbjct:  207 PAVSFGTIASEITQGSIGIVEFLLSSGLSGMAYAMMCGQPMAFIAPTGLTLAFISGLY 264          
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: A0A7S2VYJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYJ5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.210e-15
Identity = 32/58 (55.17%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
            P + F T+A+Q+T G++GV+E++L  G  GMAY++L GQPM FI PTGLTLAF++ L+
Sbjct:   18 PAVSFGTIASQITNGSIGVVEFLLGSGCAGMAYSILCGQPMAFIAPTGLTLAFISGLF 75          
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: W7TSJ0_9STRA (Anion exchanger family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSJ0_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.300e-15
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
            P + F  ++  +TQG +GVIE+++SCG+ GM YA+ SGQPMTFIGPTGLTL FM AL+
Sbjct:  207 PAVAFGGISYGLTQGAMGVIEFLVSCGMSGMLYAIFSGQPMTFIGPTGLTLCFMAALF 264          
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: A0A7S1VPE3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VPE3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.430e-15
Identity = 32/58 (55.17%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
            P + F T+A+++T G++G++E++LSCG  GM Y+VL GQPM FI PTGLTLAF++ L+
Sbjct:  212 PAVSFGTIASEITNGSIGIVEFLLSCGFSGMTYSVLCGQPMAFIAPTGLTLAFISGLF 269          
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: A0A7S1FU71_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FU71_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.320e-15
Identity = 32/58 (55.17%), Postives = 48/58 (82.76%), Query Frame = 1
Query:    1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
            P + F  +A+Q+TQG++G++E++ S G+ GMAYA+L+GQPM FI PTGLTLAF++ L+
Sbjct:  145 PAISFGAVASQITQGSIGIVEFLFSSGVAGMAYAILAGQPMAFIAPTGLTLAFISGLF 202          
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: A0A836CJA6_9STRA (Bicarbonate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.130e-15
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
            P + F   A QVT G +GV+EY+++CG  G+AY++ SGQPMTF GPTGLTLAF+TAL+
Sbjct:   60 PAVAFGGFAQQVTGGAMGVVEYLVACGGSGVAYSLFSGQPMTFTGPTGLTLAFITALH 117          
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: A0A1Z5JKD1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKD1_FISSO)

HSP 1 Score: 76.6 bits (187), Expect = 6.190e-15
Identity = 32/58 (55.17%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
            P + F T+AT++T G +G++E++LS GL G+AY++L GQPM FI PTGLTLAF++ L+
Sbjct:  167 PAVSFGTIATEITNGAMGIVEFLLSAGLSGVAYSILCGQPMAFIAPTGLTLAFISGLF 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNK7_9PHAE5.570e-2477.59AE protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G110_ECTSI7.700e-2279.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4H159_VITBC2.010e-1663.79Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
B7FQY4_PHATC5.110e-1658.62Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2VYJ5_9STRA1.210e-1555.17Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
W7TSJ0_9STRA1.300e-1560.34Anion exchanger family n=2 Tax=Monodopsidaceae Tax... [more]
A0A7S1VPE3_9STRA2.430e-1555.17Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1FU71_9STRA3.320e-1555.17Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A836CJA6_9STRA6.130e-1560.34Bicarbonate transporter n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5JKD1_FISSO6.190e-1555.17Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46877contigH-paniculata_contig46877:907..1080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue2.9e-17
Seed eggNOG ortholog2880.D7G110
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.inorganic anion exchanger activity
EggNOG OGsKOG1172@1,KOG1172@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size153
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930395.8066766-UTR-H-paniculata_contig46877:906..9271622930395.8066766-UTR-H-paniculata_contig46877:906..927Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46877 907..927 +
1691481272.4625986-UTR-H-paniculata_contig46877:906..9271691481272.4625986-UTR-H-paniculata_contig46877:906..927Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46877 907..927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930395.827566-CDS-H-paniculata_contig46877:927..10801622930395.827566-CDS-H-paniculata_contig46877:927..1080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46877 928..1080 +
1691481272.4724429-CDS-H-paniculata_contig46877:927..10801691481272.4724429-CDS-H-paniculata_contig46877:927..1080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46877 928..1080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46877.11672.1prot_H-paniculata_contig46877.11672.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46877 928..1080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46877.11672.1

>prot_H-paniculata_contig46877.11672.1 ID=prot_H-paniculata_contig46877.11672.1|Name=mRNA_H-paniculata_contig46877.11672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTAL
Y
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mRNA from alignment at H-paniculata_contig46877:907..1080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46877.11672.1 ID=mRNA_H-paniculata_contig46877.11672.1|Name=mRNA_H-paniculata_contig46877.11672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig46877:907..1080+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCCCTGTTTTTTTTAACGATGGCAACACAGGTTACTCAGGGGACCCT GGGGGTTATCGAGTATGTTCTGTCGTGCGGATTGGGCGGGATGGCGTATG CTGTCTTGAGTGGGCAGCCGATGACGTTTATCGGCCCGACAGGCCTGACC CTTGCCTTCATGACGGCCCTGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig46877:907..1080+

>mRNA_H-paniculata_contig46877.11672.1 ID=mRNA_H-paniculata_contig46877.11672.1|Name=mRNA_H-paniculata_contig46877.11672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig46877:907..1080+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAACACAGGTTACTCAGGGGACCCTGGGGGTTATCGAGTATGTTCT
GTCGTGCGGATTGGGCGGGATGGCGTATGCTGTCTTGAGTGGGCAGCCGA
TGACGTTTATCGGCCCGACAGGCCTGACCCTTGCCTTCATGACGGCCCTG
TACATGGCAACACAGGTTACTCAGGGGACCCTGGGGGTTATCGAGTATGT
TCTGTCGTGCGGATTGGGCGGGATGGCGTATGCTGTCTTGAGTGGGCAGC
CGATGACGTTTATCGGCCCGACAGGCCTGACCCTTGCCTTCATGACGGCC
CTGTAC
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