mRNA_H-paniculata_contig46877.11672.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: A0A6H5KNK7_9PHAE (AE protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK7_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 5.570e-24 Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 1
Query: 1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
P + F +ATQVTQGTLGVIEYV+SCGLGGM YA GQPMTFIGPTGLTL FMT+LY
Sbjct: 35 PAVAFGGIATQVTQGTLGVIEYVVSCGLGGMTYAAFGGQPMTFIGPTGLTLTFMTSLY 92
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: D7G110_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G110_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 7.700e-22 Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 1
Query: 1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
P + F +ATQVTQGTLGVIEYV+SCGLGGM YA GQPMTFIGPTGLTLAFMT+LY
Sbjct: 258 PAVAFGGIATQVTQGTLGVIEYVVSCGLGGMTYAAFGGQPMTFIGPTGLTLAFMTSLY 315
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: A0A0G4H159_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H159_VITBC) HSP 1 Score: 80.9 bits (198), Expect = 2.010e-16 Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1
Query: 1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
P + F +A +T G++GV E++++CG GGMAY+V SGQPMTFIGPTGLTLAF TALY
Sbjct: 214 PAVAFGGIAASITGGSMGVPEFLVACGCGGMAYSVFSGQPMTFIGPTGLTLAFTTALY 271
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: B7FQY4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQY4_PHATC) HSP 1 Score: 79.7 bits (195), Expect = 5.110e-16 Identity = 34/58 (58.62%), Postives = 49/58 (84.48%), Query Frame = 1
Query: 1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
P + F T+A+++TQG++G++E++LS GL GMAYA++ GQPM FI PTGLTLAF++ LY
Sbjct: 207 PAVSFGTIASEITQGSIGIVEFLLSSGLSGMAYAMMCGQPMAFIAPTGLTLAFISGLY 264
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: A0A7S2VYJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYJ5_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.210e-15 Identity = 32/58 (55.17%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
P + F T+A+Q+T G++GV+E++L G GMAY++L GQPM FI PTGLTLAF++ L+
Sbjct: 18 PAVSFGTIASQITNGSIGVVEFLLGSGCAGMAYSILCGQPMAFIAPTGLTLAFISGLF 75
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: W7TSJ0_9STRA (Anion exchanger family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSJ0_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.300e-15 Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
P + F ++ +TQG +GVIE+++SCG+ GM YA+ SGQPMTFIGPTGLTL FM AL+
Sbjct: 207 PAVAFGGISYGLTQGAMGVIEFLVSCGMSGMLYAIFSGQPMTFIGPTGLTLCFMAALF 264
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: A0A7S1VPE3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VPE3_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 2.430e-15 Identity = 32/58 (55.17%), Postives = 47/58 (81.03%), Query Frame = 1
Query: 1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
P + F T+A+++T G++G++E++LSCG GM Y+VL GQPM FI PTGLTLAF++ L+
Sbjct: 212 PAVSFGTIASEITNGSIGIVEFLLSCGFSGMTYSVLCGQPMAFIAPTGLTLAFISGLF 269
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: A0A7S1FU71_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FU71_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 3.320e-15 Identity = 32/58 (55.17%), Postives = 48/58 (82.76%), Query Frame = 1
Query: 1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
P + F +A+Q+TQG++G++E++ S G+ GMAYA+L+GQPM FI PTGLTLAF++ L+
Sbjct: 145 PAISFGAVASQITQGSIGIVEFLFSSGVAGMAYAILAGQPMAFIAPTGLTLAFISGLF 202
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: A0A836CJA6_9STRA (Bicarbonate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA6_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 6.130e-15 Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
P + F A QVT G +GV+EY+++CG G+AY++ SGQPMTF GPTGLTLAF+TAL+
Sbjct: 60 PAVAFGGFAQQVTGGAMGVVEYLVACGGSGVAYSLFSGQPMTFTGPTGLTLAFITALH 117
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Match: A0A1Z5JKD1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKD1_FISSO) HSP 1 Score: 76.6 bits (187), Expect = 6.190e-15 Identity = 32/58 (55.17%), Postives = 47/58 (81.03%), Query Frame = 1
Query: 1 PPLFFLTMATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALY 174
P + F T+AT++T G +G++E++LS GL G+AY++L GQPM FI PTGLTLAF++ L+
Sbjct: 167 PAVSFGTIATEITNGAMGIVEFLLSAGLSGVAYSILCGQPMAFIAPTGLTLAFISGLF 224 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46877.11672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig46877.11672.1 >prot_H-paniculata_contig46877.11672.1 ID=prot_H-paniculata_contig46877.11672.1|Name=mRNA_H-paniculata_contig46877.11672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp MATQVTQGTLGVIEYVLSCGLGGMAYAVLSGQPMTFIGPTGLTLAFMTALback to top mRNA from alignment at H-paniculata_contig46877:907..1080+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig46877.11672.1 ID=mRNA_H-paniculata_contig46877.11672.1|Name=mRNA_H-paniculata_contig46877.11672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig46877:907..1080+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig46877:907..1080+ >mRNA_H-paniculata_contig46877.11672.1 ID=mRNA_H-paniculata_contig46877.11672.1|Name=mRNA_H-paniculata_contig46877.11672.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig46877:907..1080+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |