mRNA_H-paniculata_contig4684.11664.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4684.11664.1
Unique NamemRNA_H-paniculata_contig4684.11664.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4684.11664.1 vs. uniprot
Match: A0A6H5L892_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L892_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.310e-26
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 3 
Query:    9 GAEMGYGGLRDSLALELDHKYNPGDGSNDIVYDHIGIHSAGRGSNTSALSSSELAPPRVWDVADG 203
            GA+MGYGGLRDSLA+ELDH+YNPG  S D+VYDH+G+HS G G + SAL+S+ELAPP  WD+ADG
Sbjct:  117 GADMGYGGLRDSLAVELDHRYNPGADSGDLVYDHVGVHSGGPGGDNSALASTELAPPVAWDLADG 181
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BLAST of mRNA_H-paniculata_contig4684.11664.1 vs. uniprot
Match: D8LHX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX6_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.890e-25
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 3 
Query:    9 GAEMGYGGLRDSLALELDHKYNPGDGSNDIVYDHIGIHSAGRGSNTSALSSSELAPPRVWDVADG 203
            GA+MGYGGLRDSLA+ELDH+YNPG  S D+VYDH+G+HS G G + SAL+S+ELAPP  WD+ADG
Sbjct:  125 GADMGYGGLRDSLAVELDHRYNPGADSGDLVYDHVGVHSGGPGGDNSALTSAELAPPVAWDLADG 189
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BLAST of mRNA_H-paniculata_contig4684.11664.1 vs. uniprot
Match: A0A6S9H5Z4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H5Z4_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 6.940e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 3 
Query:    9 GAEMGYGGLRDSLALELDHKYNPGDGSNDIVYDHIGIHSAGRGSN--TSALSSSELAPPRVWDVADG 203
            G ++GYGG+++SLA+E D  YNP   S+D++YDH+ IH+ G G N    A + +E+A PR  DV DG
Sbjct:  198 GGQLGYGGIKNSLAVEFDTWYNPESNSSDLIYDHVSIHAGGSGENMENDAWARTEIASPRQHDVGDG 264
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BLAST of mRNA_H-paniculata_contig4684.11664.1 vs. uniprot
Match: A0A7S2LKQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LKQ9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.350e-5
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 3 
Query:    9 GAEMGYGGLRDSLALELD--------HKYNPGDGSNDIVYDHIGIHSAGRGSNTSALSSSELAPPRVWDVADG 203
            G ++GYGGL++S+A+E D         +Y      +D+ +DH+ IHSAG G+N S  S+S L   R  D+ADG
Sbjct:  196 GKQLGYGGLKNSIAVEFDTWTNTQVTEEYK----EDDLFHDHVSIHSAGIGTNDSGESTS-LGYSRPVDLADG 263
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BLAST of mRNA_H-paniculata_contig4684.11664.1 vs. uniprot
Match: A0A7S2LMN1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LMN1_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.500e-5
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 3 
Query:    9 GAEMGYGGLRDSLALELD--------HKYNPGDGSNDIVYDHIGIHSAGRGSNTSALSSSELAPPRVWDVADG 203
            G ++GYGGL++S+A+E D         +Y      +D+ +DH+ IHSAG G+N S  S+S L   R  D+ADG
Sbjct:  196 GKQLGYGGLKNSIAVEFDTWTNTQVTEEYK----EDDLFHDHVSIHSAGIGTNDSGESTS-LGYSRPVDLADG 263
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BLAST of mRNA_H-paniculata_contig4684.11664.1 vs. uniprot
Match: L1K529_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K529_GUITC)

HSP 1 Score: 48.5 bits (114), Expect = 6.970e-5
Identity = 29/65 (44.62%), Postives = 39/65 (60.00%), Query Frame = 3 
Query:    9 GAEMGYGGLRDSLALELDHKYNPGDGSNDIVYDHIGIHSAGRGSNTSALSSSELAPPRVWDVADG 203
            GA++GYGGLR SLA+E D   NP  G  D   +HI IHS G   N++A + S    P++  + DG
Sbjct:  106 GAQLGYGGLRKSLAIEFDVTVNPQLG--DAGQNHISIHSRGSEPNSAAHTFSIAQTPQLPILFDG 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4684.11664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L892_9PHAE1.310e-2670.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHX6_ECTSI1.890e-2570.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6S9H5Z4_HETAK6.940e-1347.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2LKQ9_9STRA1.350e-541.10Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2LMN1_9STRA1.500e-541.10Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
L1K529_GUITC6.970e-544.62Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4684contigH-paniculata_contig4684:3680..5094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog2880.D8LHX6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Legume lectin domain
EggNOG OGs2CMVS@1,2QS8X@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size205
Cds size186
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4684.11664.1prot_H-paniculata_contig4684.11664.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4684 3697..5094 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930394.793782-UTR-H-paniculata_contig4684:3679..36961622930394.793782-UTR-H-paniculata_contig4684:3679..3696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4684 3680..3696 +
1691481272.0490649-UTR-H-paniculata_contig4684:3679..36961691481272.0490649-UTR-H-paniculata_contig4684:3679..3696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4684 3680..3696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930394.8092122-CDS-H-paniculata_contig4684:3696..37291622930394.8092122-CDS-H-paniculata_contig4684:3696..3729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4684 3697..3729 +
1691481272.061894-CDS-H-paniculata_contig4684:3696..37291691481272.061894-CDS-H-paniculata_contig4684:3696..3729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4684 3697..3729 +
1622930394.8213317-CDS-H-paniculata_contig4684:4941..50941622930394.8213317-CDS-H-paniculata_contig4684:4941..5094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4684 4942..5094 +
1691481272.0696735-CDS-H-paniculata_contig4684:4941..50941691481272.0696735-CDS-H-paniculata_contig4684:4941..5094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4684 4942..5094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4684.11664.1

>prot_H-paniculata_contig4684.11664.1 ID=prot_H-paniculata_contig4684.11664.1|Name=mRNA_H-paniculata_contig4684.11664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MGYGGLRDSLALELDHKYNPGDGSNDIVYDHIGIHSAGRGSNTSALSSSE
LAPPRVWDVADG
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mRNA from alignment at H-paniculata_contig4684:3680..5094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4684.11664.1 ID=mRNA_H-paniculata_contig4684.11664.1|Name=mRNA_H-paniculata_contig4684.11664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1415bp|location=Sequence derived from alignment at H-paniculata_contig4684:3680..5094+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCGCCTGGTGCTGAGATGGGCTACGGTGGGCTGAGGGATAGTCTTGCG
GTGAGTCAGATGTTGCTGCAGGTCCTACGTGTCGTGATTGTTGTTGTTGC
TGTTGCTGTTGGTGGTGTTGGCAGCAGTGTTTGCCACTCGGTCGAACACG
GTGGTTGAGGTACCCTTATTCGTTGCCGGAAGCTCAGGTAATAAACGGCT
CACTCGATACGCACACAATTAGCCTAGGTCTCAGTCTCACAGACCTTGTG
TAGAGAGTAGATGATGGAAATGGAAAGAACTAAATTAGATGGGGCCACCC
TCATAGGTGAGCAACTGGTACATCAAACGTGTCATACTCTGATGGACGCA
TGTAAATCCTACGTCATGATCCTAATAATCCTAACTTACATGAATAGCAC
CACATTAAATGCCATTGACAATACCCAGAAGCACCACAATGAATAACACA
AACTCAGCATAATAGTGTACCCAGAAAGTTCAAGACCGTTCTGGTCTAGT
GATTCTGAGTTGCGCCTTTGCTCAAATAGGTTCCTGGCCGCCAGGCGCCG
ATATGAGCTATGCCAACGCACACTGTACCCAGGGGGGTGGGGTTACGCGT
TAGTTCCATCCTTGGTCCTGCTCGCGTCGAGGCACCACGAAGAGTGAGCC
ATAAAAGAAAGAGCAATCAACCATTGTATTCGATCAAGTGGTATACAGCG
CTCGGTGCTGGTGTCGTTGTTGTGGTTCTTTTAGTGCTTCTTGAAGATTA
AGTTTTGAGCCTCCACGGGCGCACTCTCAAACGCTATGTATCGAAAAATA
GCCTGTTAAATCGAAGGGGAACTTGTTGGAAGCATGAGTTTTTCCTACAA
CTAACGAGTCTACAGTAGATCTTGCCAACGACTCTGCCAACGCCAGGCGG
AAAGGCTGCTTAACCGTTAGGGGGCTTACATCTAGAAAATCTATGGAACT
GCTTTGGGGAGATGCTTTTCCCAATGAAGTATGGGTTAATAATAATGAAA
TATGGGTTAATAATAATGAAATATGGGTTAATAATAATGAAATATGGGGG
TTACGTGTAGATGCCGGAGAATGGCTACAATGGAGGCGGTCATCTACGTT
GATTCGCCCCCTCTGAAAAGAGGGGTGGTTGGCTTGTCGGCATATAGCCT
TCCGCTGACAAGAACAGTTGTTTATTCGTAGAGGTGTGACACTCAGGCTT
TTTGAAAACGATGTTTACGCTCCGAAGGGGTCAGTGCCATGTCTCCCCCT
TGATTTTACCAGTTGGAGCTAGATCACAAGTACAACCCGGGAGACGGGAG
CAACGACATTGTGTACGACCACATCGGGATACACTCGGCTGGTCGGGGTA
GCAACACCTCAGCACTGTCTTCGTCTGAACTCGCACCGCCTAGGGTTTGG
GATGTTGCCGACGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4684:3680..5094+

>mRNA_H-paniculata_contig4684.11664.1 ID=mRNA_H-paniculata_contig4684.11664.1|Name=mRNA_H-paniculata_contig4684.11664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig4684:3680..5094+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCTACGGTGGGCTGAGGGATAGTCTTGCGATGGGCTACGGTGGGCT
GAGGGATAGTCTTGCGTTGGAGCTAGATCACAAGTACAACCCGGGAGACG
GGAGCAACGACATTGTGTACGACCACATCGGGATACACTCGGCTGGTCGG
GGTAGCAACACCTCAGCACTGTCTTCGTCTGAACTCGCACCGCCTAGGGT
TTGGGATGTTGCCGACGGATTGGAGCTAGATCACAAGTACAACCCGGGAG
ACGGGAGCAACGACATTGTGTACGACCACATCGGGATACACTCGGCTGGT
CGGGGTAGCAACACCTCAGCACTGTCTTCGTCTGAACTCGCACCGCCTAG
GGTTTGGGATGTTGCCGACGGA
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