mRNA_H-paniculata_contig1182.1166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	924
Cds size	690
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig1182.1166.1	prot_H-paniculata_contig1182.1166.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig1182 4407..5096 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928892.7771695-CDS-H-paniculata_contig1182:4406..5096	1622928892.7771695-CDS-H-paniculata_contig1182:4406..5096	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1182 4407..5096 -
1691480658.912476-CDS-H-paniculata_contig1182:4406..5096	1691480658.912476-CDS-H-paniculata_contig1182:4406..5096	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig1182 4407..5096 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928892.7903507-UTR-H-paniculata_contig1182:5096..5112	1622928892.7903507-UTR-H-paniculata_contig1182:5096..5112	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1182 5097..5112 -
1691480658.9229696-UTR-H-paniculata_contig1182:5096..5112	1691480658.9229696-UTR-H-paniculata_contig1182:5096..5112	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1182 5097..5112 -
1622928892.806435-UTR-H-paniculata_contig1182:6502..6685	1622928892.806435-UTR-H-paniculata_contig1182:6502..6685	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1182 6503..6685 -
1691480658.9320517-UTR-H-paniculata_contig1182:6502..6685	1691480658.9320517-UTR-H-paniculata_contig1182:6502..6685	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1182 6503..6685 -
1622928892.8170063-UTR-H-paniculata_contig1182:9108..9142	1622928892.8170063-UTR-H-paniculata_contig1182:9108..9142	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1182 9109..9142 -
1691480658.9402275-UTR-H-paniculata_contig1182:9108..9142	1691480658.9402275-UTR-H-paniculata_contig1182:9108..9142	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig1182 9109..9142 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig1182:4407..9142-
coding sequence from alignment at H-paniculata_contig1182:4407..9142-

protein sequence of mRNA_H-paniculata_contig1182.1166.1

>prot_H-paniculata_contig1182.1166.1 ID=prot_H-paniculata_contig1182.1166.1|Name=mRNA_H-paniculata_contig1182.1166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
MTSEISFHPGMELFGPGLVDLETAMPPLHPTRRSLSPQPQRRLSASQEQE
EGQTEGVLGEDGPVLLLSNSLDHRGDAARMQAAGSAVAEPGGPLGGDDSF
TSSTAAADGTPLYDDDVSASTAPMSPPTLGGRPMGMGIMGALMGERRSRG
GGVGVAVGRGVAQNNRRRTFGGGIGDHDTFATASAGMPRVRSVSSVSSAE
SSASTASSSSSDGGGGGERQQPSRRRGVSL

mRNA from alignment at H-paniculata_contig1182:4407..9142-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig1182.1166.1 ID=mRNA_H-paniculata_contig1182.1166.1|Name=mRNA_H-paniculata_contig1182.1166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4736bp|location=Sequence derived from alignment at H-paniculata_contig1182:4407..9142- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAAAATGAAGAAGACAACAGATTAAAAAGCAGGTACCGACGGTTCCTT
GCGCCCGTACTTGAAGCGGATGTGGTTGATTTACCCATGGCGGAACTTTT
TTTTGTTTCACCCATGTATGTGGGCAGACAGGTTGCTATACAACATGCAA
AGATCGAGAATCCATGCAAGATCCATACAGACAGACGTATATGTTCTCTT
TTTGGCTGGACTGATACATCTATGCGACTTTTTGTTGGTTCTATCCAGGT
ACGAGCAGGGCAGCCTTGTGCTTCCGCGTCCGCATATATATATATATATC
TGTATGATATGCACTTTCAGCAGTTTTGCCTATAATTGACGACCAACAAC
GGTCAGCCGAAGTGGAAGAAAGATCCTGCACACCATATTATCCTTGGCAC
CATTGCTGGATTACGACATTTATGTACATGATGTATATACACAACAAATA
ATGCAGGCCCAAACAAACAAACAAATCGTCCTCGTCGTCTAGAAATGAAT
CTTGTATTATTATTGATAATTAAGGATATACATCACTTTCCAACTGTTGA
TCTAAACAAGACTTTTCATCTTCCAGGAACGATTTCTGCATACAATAACA
GGGTCCTTTCTTAACGATCACCCGTTCATGACCATACTACGTGAAACAGC
TGCTCACCATTCTCATTGGTATGGCGGATCACATCCCATATATTAACTGC
ATAGTCGAAGAAACTATACTGACTGGGGCACATACTGTTGATTTGAAGAC
TATAGTGGGCAGGTCATGGCCACGCCAGTGGCGGCGACTACGTCGATGAC
GTTGTAGTAGCTCTAGCGGATGAATACGGACTCGCTGTGCTCGCCGTGAC
TCTCCTACGCTCGAATGTAGGCGCAGTTAACATTTATTTTATTCAAGTTT
ACGGCCTGCTGTTGTACACAAACCCGTTGCGCTCGCTCACGGTAGTATGT
ACGTGCACTTGTAACGTTCAAGTTTCGCTCGACACACACGCACTTGCTGC
GCTCACTGTGGCTCGCTTACGCTCACTCACATACAGACACATGGCAAAAC
AACAACTTTGTAAAGTGGAAGAAGAGGTATCTGTAACGGTACGATGCGGG
TGAGCATTCATGTATTCATAGACTGGTAGAAACTCTCACCTACCATTGGA
GGGGCAGATAGATGGGAAAACGAAATTTATGGTCAGTGCAGTACAGGACA
ACGGACTAAAATGTGAAACTACACTTCCTTAGTAATACCTATATGCACCG
GCGGTTTTACGCAATTTAGTTATTCAGGTTCTTCAGGTCCTGCCCATTCC
TTCTACAAACCCTGGTGCGTGTGGTGCGTGTGGTGCGTGTGGACGACAGC
ATCATCTATCCAACACAAACTTGAAAAAACGTATATTGAACTGTTTATGT
TTTGTTTTCCCGACTCTCTTCTGTCTCTCTCTCTTTCTCTTGGTACAAAG
ACAATCTTTCCACACAATAATACTACATGTTTCCACATGGACTGGCGCTT
CTGTTGCTTCTCGGTTTAGTTACCCTGCAGTGTAGGCGTGGACTACCTGT
CACTGTTTTTGTGTGCATTGCGTGTAAATCCTGACAAGGATATGTCTGCG
TTGCATTGTGCATTGCGTTGTGAGCTGGACCTGGCAGCTGGTGGCCATGT
ATGAGCTGACCGTATGGAGATTTGATTGTTTATTTCTAAATCTATTTGGT
TTGAGACAACATTTTCCGGCTATAAAATTTTCGAAAGTCGTACTTTCGAT
TCGTGTTTTTGAATTTACTTGAGTTGAAACTTACAAACAGTTCCGAAAAT
AACAAGACCTTAGCGCCTATACGAGTATGGCCAACAGCTAGAACAAGAGG
AGAGGGAAACTTACAATCTATACATTTTTCGAGATGTTGTTGGTACCTAG
ATTTCCCCCCCATCAAAGCTAAAGCGCCTCGACAGAATAGCTGTACAGTA
GCGCTGTTGCTTTGCTACTCTTTGCTGACACACCTAACACACGACAAATC
TAACTGTAAATGCATGCATTTACAGTGATTCACACATCGACAATGGGGTG
AATGTAGAATCTACTTGATTTTACCAGAAGATGCTGCATGTCCAGCGGCA
TCAGATATCGAAACGAGTGCGAAGGAGACAAGATCATTTCTGGGCGCACC
ATCACGTCCTTAGTGAACAAAATAATAAGATAAACGAAACCACATATTCT
TCTAGTGCTGGCAACCAAAACAATAAAACCCAGCAGTCAGTTCCCTCCCA
TCTACTTGCTTTGAAGGCCATCAACAGAGGCTGCTACTGAGAAAACTGTC
CACATTACCACCCTTAAAACGCGGCGGAATTGTTCGAAATTCCGCCGCGT
TTTTAATTTTTCTTCCGCATATTCAGGGTCCCTCCCTGTGAGTCCCCCGT
GTCAAAAAAATTTGGCTCTATTTTCCGTTCTTTTCGTGCGCGGGATCATC
ACCCCAGACAGGACAAGGAAGGCGGGCAGAGGCCGCGGAGGGGTACACAT
CACCATAACTATAGCTACACTCAGCAAATCAGTCGGTACCGGTTCATCCT
TTCGCAGCCTTAACACTGTGGCGAAGTCGACGTGGCAGCAGGTCGCTTTA
CAGACTGCGCGAGACAAGCCTTTGCGCCTTGTTGTCGTTGGTGAGTTTCG
ATGTCTGCATGTACATGTACAAAGTGCAGCTATGTTTTTGCCATACGTCC
AGGGTTCGTTTGTGCAGCGTGAGGTCGGTCTAGATGTGCCGGCGAAGAAG
ATACTAGAGGTGCCATGGCAACATTGATGCTCTTTTTTGCAAAAAAGTTA
AGTAAGGTGCAGGGGGAGTACTAGTGCTCTCGCTCGAGTGACGTCGCACA
GTGGCCGTTGGTGTGTTGCTCTGCTTGAATATCATGTACTGTCCCGACTT
GTCGAAAAGTGGCGTGGACCTTCGAAAAGTGGCGTGGACCTTCCCGCTAT
ATTTTGTTATGATATAAGATAACAATTTGATACCACATGTTTGTGTGTAC
ATACAGACAGTTGTACATACCCCAGAAATTTGTTCGCTGATACATGTGCG
GTTCTCACCATCCTCCCATGATACTCCTTCTCCAGCATTCTGTGCTCAGA
TTACAGTCTCGTGTTGTCGGCAACTGCGAGTGATGAGGGCAACCCTCGAG
CACATGTTGCGTGATTTACTTGAGTTGGGGGTGACACTATCAAGTACAGT
TTTTATTTTTGTGTCACAACATACTTTTAATAAATTTACTGACTGTACGG
TATTTCGCGCAAGATTTTCAGCCTGTTCAACTCGTTGCCCCTGAGAAGCT
GCCCGCACTACAACTTTCGTATTTAGCCTTTGGATTGCAACCGACATAGT
GAGCGGTGCCCATCAGATGCAGCCTGCCTGCTGAGGCCATTCTATGTGCG
CTGGCCTGTTTGAAGACCGTGTTCATAAGACCCAGGTAGTCCTTTTCTAC
CGATGGATTTTCCTCCAACTTTGGCGCAAATTAAATTTATGGTTGAGGTT
GTAGGTAGTCCCTGTATAGGACAAGTTTTTAGTCCGTTCAACTGGCCCCC
CCCTGAGCAGGTGCCATCAACACCGCTGCAGTAGCCCCGTGGATTACAAC
TAACAGAGCGACTGGTACTCATTGGACACAGCATATACTCTTCAGTCATC
CGATGTGCTCTCGTCTATTTAGAGATCGCGTGCATGGGACCCACGATTCG
GTTTTCTTGCGGATTCGGCGTAAATATAATTATGGTTGACGTAGCTCGGA
CCTGTGAACCAACATGTCTTGAACAACAGGCCGGATGGGAAGCCTTGGCT
GTTTGTTATTTATCTGCCGTACATAAGATATAGACTTCAGACAACTCCAT
CACACTTCGACAAGGGTACGCCAGCCGCCACTTAGTTTCAACATTAGAGA
CTCCCGTCCCACTTATGCAGCCGACGCCAGCGCCCCACACGCCTAAAGAT
CGCGAACCCGACCCTTCCACTCCCCCGCCCCACCACCCCCTCCCCTTCCT
CTCCCCCCCATTTTCTTTCCCAACTTAAAGAGTGTGTGATTAGATAATGA
CGTCTGAGATCTCTTTTCACCCGGGGATGGAATTGTTCGGGCCCGGCCTA
GTAGACCTTGAGACGGCGATGCCGCCGCTGCACCCAACGCGGCGCTCGCT
GTCCCCCCAGCCTCAACGTCGCCTCTCGGCAAGCCAAGAACAGGAGGAAG
GACAGACGGAAGGTGTGCTCGGTGAAGACGGCCCAGTGCTGCTCCTGTCG
AACTCCCTCGATCACCGAGGAGACGCGGCGAGAATGCAGGCCGCCGGCTC
CGCCGTGGCAGAACCCGGGGGTCCTCTCGGCGGCGACGATAGCTTCACCT
CTTCCACTGCCGCCGCCGACGGCACACCGTTGTATGACGATGATGTGTCG
GCATCAACAGCGCCAATGTCACCACCAACGTTAGGCGGCAGGCCAATGGG
CATGGGCATCATGGGCGCTCTAATGGGAGAGCGACGATCCCGCGGCGGCG
GAGTTGGCGTGGCCGTCGGCAGAGGCGTCGCCCAGAACAATCGGAGGCGT
ACGTTCGGCGGCGGAATCGGTGATCATGACACATTCGCGACGGCCAGTGC
TGGTATGCCCAGGGTCCGTAGCGTTAGCAGTGTCAGTAGCGCCGAAAGTT
CAGCTAGCACAGCTAGCAGCAGCAGCAGCGATGGCGGCGGCGGCGGAGAG
CGGCAGCAGCCATCAAGGAGACGCGGAGTGTCGCTC

Coding sequence (CDS) from alignment at H-paniculata_contig1182:4407..9142-

>mRNA_H-paniculata_contig1182.1166.1 ID=mRNA_H-paniculata_contig1182.1166.1|Name=mRNA_H-paniculata_contig1182.1166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig1182:4407..9142- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTCTGAGATCTCTTTTCACCCGGGGATGGAATTGTTCGGGCCCGG
CCTAGTAGACCTTGAGACGGCGATGCCGCCGCTGCACCCAACGCGGCGCT
CGCTGTCCCCCCAGCCTCAACGTCGCCTCTCGGCAAGCCAAGAACAGGAG
GAAGGACAGACGGAAGGTGTGCTCGGTGAAGACGGCCCAGTGCTGCTCCT
GTCGAACTCCCTCGATCACCGAGGAGACGCGGCGAGAATGCAGGCCGCCG
GCTCCGCCGTGGCAGAACCCGGGGGTCCTCTCGGCGGCGACGATAGCTTC
ACCTCTTCCACTGCCGCCGCCGACGGCACACCGTTGTATGACGATGATGT
GTCGGCATCAACAGCGCCAATGTCACCACCAACGTTAGGCGGCAGGCCAA
TGGGCATGGGCATCATGGGCGCTCTAATGGGAGAGCGACGATCCCGCGGC
GGCGGAGTTGGCGTGGCCGTCGGCAGAGGCGTCGCCCAGAACAATCGGAG
GCGTACGTTCGGCGGCGGAATCGGTGATCATGACACATTCGCGACGGCCA
GTGCTGGTATGCCCAGGGTCCGTAGCGTTAGCAGTGTCAGTAGCGCCGAA
AGTTCAGCTAGCACAGCTAGCAGCAGCAGCAGCGATGGCGGCGGCGGCGG
AGAGCGGCAGCAGCCATCAAGGAGACGCGGAGTGTCGCTCATGACGTCTG
AGATCTCTTTTCACCCGGGGATGGAATTGTTCGGGCCCGGCCTAGTAGAC
CTTGAGACGGCGATGCCGCCGCTGCACCCAACGCGGCGCTCGCTGTCCCC
CCAGCCTCAACGTCGCCTCTCGGCAAGCCAAGAACAGGAGGAAGGACAGA
CGGAAGGTGTGCTCGGTGAAGACGGCCCAGTGCTGCTCCTGTCGAACTCC
CTCGATCACCGAGGAGACGCGGCGAGAATGCAGGCCGCCGGCTCCGCCGT
GGCAGAACCCGGGGGTCCTCTCGGCGGCGACGATAGCTTCACCTCTTCCA
CTGCCGCCGCCGACGGCACACCGTTGTATGACGATGATGTGTCGGCATCA
ACAGCGCCAATGTCACCACCAACGTTAGGCGGCAGGCCAATGGGCATGGG
CATCATGGGCGCTCTAATGGGAGAGCGACGATCCCGCGGCGGCGGAGTTG
GCGTGGCCGTCGGCAGAGGCGTCGCCCAGAACAATCGGAGGCGTACGTTC
GGCGGCGGAATCGGTGATCATGACACATTCGCGACGGCCAGTGCTGGTAT
GCCCAGGGTCCGTAGCGTTAGCAGTGTCAGTAGCGCCGAAAGTTCAGCTA
GCACAGCTAGCAGCAGCAGCAGCGATGGCGGCGGCGGCGGAGAGCGGCAG
CAGCCATCAAGGAGACGCGGAGTGTCGCTC

mRNA_H-paniculata_contig1182.1166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

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