mRNA_H-paniculata_contig1182.1166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1182.1166.1
Unique NamemRNA_H-paniculata_contig1182.1166.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1182.1166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1182contigH-paniculata_contig1182:4407..9142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size924
Cds size690
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1182.1166.1prot_H-paniculata_contig1182.1166.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1182 4407..5096 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928892.7771695-CDS-H-paniculata_contig1182:4406..50961622928892.7771695-CDS-H-paniculata_contig1182:4406..5096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1182 4407..5096 -
1691480658.912476-CDS-H-paniculata_contig1182:4406..50961691480658.912476-CDS-H-paniculata_contig1182:4406..5096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1182 4407..5096 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928892.7903507-UTR-H-paniculata_contig1182:5096..51121622928892.7903507-UTR-H-paniculata_contig1182:5096..5112Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1182 5097..5112 -
1691480658.9229696-UTR-H-paniculata_contig1182:5096..51121691480658.9229696-UTR-H-paniculata_contig1182:5096..5112Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1182 5097..5112 -
1622928892.806435-UTR-H-paniculata_contig1182:6502..66851622928892.806435-UTR-H-paniculata_contig1182:6502..6685Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1182 6503..6685 -
1691480658.9320517-UTR-H-paniculata_contig1182:6502..66851691480658.9320517-UTR-H-paniculata_contig1182:6502..6685Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1182 6503..6685 -
1622928892.8170063-UTR-H-paniculata_contig1182:9108..91421622928892.8170063-UTR-H-paniculata_contig1182:9108..9142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1182 9109..9142 -
1691480658.9402275-UTR-H-paniculata_contig1182:9108..91421691480658.9402275-UTR-H-paniculata_contig1182:9108..9142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1182 9109..9142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1182.1166.1

>prot_H-paniculata_contig1182.1166.1 ID=prot_H-paniculata_contig1182.1166.1|Name=mRNA_H-paniculata_contig1182.1166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
MTSEISFHPGMELFGPGLVDLETAMPPLHPTRRSLSPQPQRRLSASQEQE
EGQTEGVLGEDGPVLLLSNSLDHRGDAARMQAAGSAVAEPGGPLGGDDSF
TSSTAAADGTPLYDDDVSASTAPMSPPTLGGRPMGMGIMGALMGERRSRG
GGVGVAVGRGVAQNNRRRTFGGGIGDHDTFATASAGMPRVRSVSSVSSAE
SSASTASSSSSDGGGGGERQQPSRRRGVSL
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mRNA from alignment at H-paniculata_contig1182:4407..9142-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1182.1166.1 ID=mRNA_H-paniculata_contig1182.1166.1|Name=mRNA_H-paniculata_contig1182.1166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4736bp|location=Sequence derived from alignment at H-paniculata_contig1182:4407..9142- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAAAATGAAGAAGACAACAGATTAAAAAGCAGGTACCGACGGTTCCTT
GCGCCCGTACTTGAAGCGGATGTGGTTGATTTACCCATGGCGGAACTTTT
TTTTGTTTCACCCATGTATGTGGGCAGACAGGTTGCTATACAACATGCAA
AGATCGAGAATCCATGCAAGATCCATACAGACAGACGTATATGTTCTCTT
TTTGGCTGGACTGATACATCTATGCGACTTTTTGTTGGTTCTATCCAGGT
ACGAGCAGGGCAGCCTTGTGCTTCCGCGTCCGCATATATATATATATATC
TGTATGATATGCACTTTCAGCAGTTTTGCCTATAATTGACGACCAACAAC
GGTCAGCCGAAGTGGAAGAAAGATCCTGCACACCATATTATCCTTGGCAC
CATTGCTGGATTACGACATTTATGTACATGATGTATATACACAACAAATA
ATGCAGGCCCAAACAAACAAACAAATCGTCCTCGTCGTCTAGAAATGAAT
CTTGTATTATTATTGATAATTAAGGATATACATCACTTTCCAACTGTTGA
TCTAAACAAGACTTTTCATCTTCCAGGAACGATTTCTGCATACAATAACA
GGGTCCTTTCTTAACGATCACCCGTTCATGACCATACTACGTGAAACAGC
TGCTCACCATTCTCATTGGTATGGCGGATCACATCCCATATATTAACTGC
ATAGTCGAAGAAACTATACTGACTGGGGCACATACTGTTGATTTGAAGAC
TATAGTGGGCAGGTCATGGCCACGCCAGTGGCGGCGACTACGTCGATGAC
GTTGTAGTAGCTCTAGCGGATGAATACGGACTCGCTGTGCTCGCCGTGAC
TCTCCTACGCTCGAATGTAGGCGCAGTTAACATTTATTTTATTCAAGTTT
ACGGCCTGCTGTTGTACACAAACCCGTTGCGCTCGCTCACGGTAGTATGT
ACGTGCACTTGTAACGTTCAAGTTTCGCTCGACACACACGCACTTGCTGC
GCTCACTGTGGCTCGCTTACGCTCACTCACATACAGACACATGGCAAAAC
AACAACTTTGTAAAGTGGAAGAAGAGGTATCTGTAACGGTACGATGCGGG
TGAGCATTCATGTATTCATAGACTGGTAGAAACTCTCACCTACCATTGGA
GGGGCAGATAGATGGGAAAACGAAATTTATGGTCAGTGCAGTACAGGACA
ACGGACTAAAATGTGAAACTACACTTCCTTAGTAATACCTATATGCACCG
GCGGTTTTACGCAATTTAGTTATTCAGGTTCTTCAGGTCCTGCCCATTCC
TTCTACAAACCCTGGTGCGTGTGGTGCGTGTGGTGCGTGTGGACGACAGC
ATCATCTATCCAACACAAACTTGAAAAAACGTATATTGAACTGTTTATGT
TTTGTTTTCCCGACTCTCTTCTGTCTCTCTCTCTTTCTCTTGGTACAAAG
ACAATCTTTCCACACAATAATACTACATGTTTCCACATGGACTGGCGCTT
CTGTTGCTTCTCGGTTTAGTTACCCTGCAGTGTAGGCGTGGACTACCTGT
CACTGTTTTTGTGTGCATTGCGTGTAAATCCTGACAAGGATATGTCTGCG
TTGCATTGTGCATTGCGTTGTGAGCTGGACCTGGCAGCTGGTGGCCATGT
ATGAGCTGACCGTATGGAGATTTGATTGTTTATTTCTAAATCTATTTGGT
TTGAGACAACATTTTCCGGCTATAAAATTTTCGAAAGTCGTACTTTCGAT
TCGTGTTTTTGAATTTACTTGAGTTGAAACTTACAAACAGTTCCGAAAAT
AACAAGACCTTAGCGCCTATACGAGTATGGCCAACAGCTAGAACAAGAGG
AGAGGGAAACTTACAATCTATACATTTTTCGAGATGTTGTTGGTACCTAG
ATTTCCCCCCCATCAAAGCTAAAGCGCCTCGACAGAATAGCTGTACAGTA
GCGCTGTTGCTTTGCTACTCTTTGCTGACACACCTAACACACGACAAATC
TAACTGTAAATGCATGCATTTACAGTGATTCACACATCGACAATGGGGTG
AATGTAGAATCTACTTGATTTTACCAGAAGATGCTGCATGTCCAGCGGCA
TCAGATATCGAAACGAGTGCGAAGGAGACAAGATCATTTCTGGGCGCACC
ATCACGTCCTTAGTGAACAAAATAATAAGATAAACGAAACCACATATTCT
TCTAGTGCTGGCAACCAAAACAATAAAACCCAGCAGTCAGTTCCCTCCCA
TCTACTTGCTTTGAAGGCCATCAACAGAGGCTGCTACTGAGAAAACTGTC
CACATTACCACCCTTAAAACGCGGCGGAATTGTTCGAAATTCCGCCGCGT
TTTTAATTTTTCTTCCGCATATTCAGGGTCCCTCCCTGTGAGTCCCCCGT
GTCAAAAAAATTTGGCTCTATTTTCCGTTCTTTTCGTGCGCGGGATCATC
ACCCCAGACAGGACAAGGAAGGCGGGCAGAGGCCGCGGAGGGGTACACAT
CACCATAACTATAGCTACACTCAGCAAATCAGTCGGTACCGGTTCATCCT
TTCGCAGCCTTAACACTGTGGCGAAGTCGACGTGGCAGCAGGTCGCTTTA
CAGACTGCGCGAGACAAGCCTTTGCGCCTTGTTGTCGTTGGTGAGTTTCG
ATGTCTGCATGTACATGTACAAAGTGCAGCTATGTTTTTGCCATACGTCC
AGGGTTCGTTTGTGCAGCGTGAGGTCGGTCTAGATGTGCCGGCGAAGAAG
ATACTAGAGGTGCCATGGCAACATTGATGCTCTTTTTTGCAAAAAAGTTA
AGTAAGGTGCAGGGGGAGTACTAGTGCTCTCGCTCGAGTGACGTCGCACA
GTGGCCGTTGGTGTGTTGCTCTGCTTGAATATCATGTACTGTCCCGACTT
GTCGAAAAGTGGCGTGGACCTTCGAAAAGTGGCGTGGACCTTCCCGCTAT
ATTTTGTTATGATATAAGATAACAATTTGATACCACATGTTTGTGTGTAC
ATACAGACAGTTGTACATACCCCAGAAATTTGTTCGCTGATACATGTGCG
GTTCTCACCATCCTCCCATGATACTCCTTCTCCAGCATTCTGTGCTCAGA
TTACAGTCTCGTGTTGTCGGCAACTGCGAGTGATGAGGGCAACCCTCGAG
CACATGTTGCGTGATTTACTTGAGTTGGGGGTGACACTATCAAGTACAGT
TTTTATTTTTGTGTCACAACATACTTTTAATAAATTTACTGACTGTACGG
TATTTCGCGCAAGATTTTCAGCCTGTTCAACTCGTTGCCCCTGAGAAGCT
GCCCGCACTACAACTTTCGTATTTAGCCTTTGGATTGCAACCGACATAGT
GAGCGGTGCCCATCAGATGCAGCCTGCCTGCTGAGGCCATTCTATGTGCG
CTGGCCTGTTTGAAGACCGTGTTCATAAGACCCAGGTAGTCCTTTTCTAC
CGATGGATTTTCCTCCAACTTTGGCGCAAATTAAATTTATGGTTGAGGTT
GTAGGTAGTCCCTGTATAGGACAAGTTTTTAGTCCGTTCAACTGGCCCCC
CCCTGAGCAGGTGCCATCAACACCGCTGCAGTAGCCCCGTGGATTACAAC
TAACAGAGCGACTGGTACTCATTGGACACAGCATATACTCTTCAGTCATC
CGATGTGCTCTCGTCTATTTAGAGATCGCGTGCATGGGACCCACGATTCG
GTTTTCTTGCGGATTCGGCGTAAATATAATTATGGTTGACGTAGCTCGGA
CCTGTGAACCAACATGTCTTGAACAACAGGCCGGATGGGAAGCCTTGGCT
GTTTGTTATTTATCTGCCGTACATAAGATATAGACTTCAGACAACTCCAT
CACACTTCGACAAGGGTACGCCAGCCGCCACTTAGTTTCAACATTAGAGA
CTCCCGTCCCACTTATGCAGCCGACGCCAGCGCCCCACACGCCTAAAGAT
CGCGAACCCGACCCTTCCACTCCCCCGCCCCACCACCCCCTCCCCTTCCT
CTCCCCCCCATTTTCTTTCCCAACTTAAAGAGTGTGTGATTAGATAATGA
CGTCTGAGATCTCTTTTCACCCGGGGATGGAATTGTTCGGGCCCGGCCTA
GTAGACCTTGAGACGGCGATGCCGCCGCTGCACCCAACGCGGCGCTCGCT
GTCCCCCCAGCCTCAACGTCGCCTCTCGGCAAGCCAAGAACAGGAGGAAG
GACAGACGGAAGGTGTGCTCGGTGAAGACGGCCCAGTGCTGCTCCTGTCG
AACTCCCTCGATCACCGAGGAGACGCGGCGAGAATGCAGGCCGCCGGCTC
CGCCGTGGCAGAACCCGGGGGTCCTCTCGGCGGCGACGATAGCTTCACCT
CTTCCACTGCCGCCGCCGACGGCACACCGTTGTATGACGATGATGTGTCG
GCATCAACAGCGCCAATGTCACCACCAACGTTAGGCGGCAGGCCAATGGG
CATGGGCATCATGGGCGCTCTAATGGGAGAGCGACGATCCCGCGGCGGCG
GAGTTGGCGTGGCCGTCGGCAGAGGCGTCGCCCAGAACAATCGGAGGCGT
ACGTTCGGCGGCGGAATCGGTGATCATGACACATTCGCGACGGCCAGTGC
TGGTATGCCCAGGGTCCGTAGCGTTAGCAGTGTCAGTAGCGCCGAAAGTT
CAGCTAGCACAGCTAGCAGCAGCAGCAGCGATGGCGGCGGCGGCGGAGAG
CGGCAGCAGCCATCAAGGAGACGCGGAGTGTCGCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig1182:4407..9142-

>mRNA_H-paniculata_contig1182.1166.1 ID=mRNA_H-paniculata_contig1182.1166.1|Name=mRNA_H-paniculata_contig1182.1166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig1182:4407..9142- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTCTGAGATCTCTTTTCACCCGGGGATGGAATTGTTCGGGCCCGG
CCTAGTAGACCTTGAGACGGCGATGCCGCCGCTGCACCCAACGCGGCGCT
CGCTGTCCCCCCAGCCTCAACGTCGCCTCTCGGCAAGCCAAGAACAGGAG
GAAGGACAGACGGAAGGTGTGCTCGGTGAAGACGGCCCAGTGCTGCTCCT
GTCGAACTCCCTCGATCACCGAGGAGACGCGGCGAGAATGCAGGCCGCCG
GCTCCGCCGTGGCAGAACCCGGGGGTCCTCTCGGCGGCGACGATAGCTTC
ACCTCTTCCACTGCCGCCGCCGACGGCACACCGTTGTATGACGATGATGT
GTCGGCATCAACAGCGCCAATGTCACCACCAACGTTAGGCGGCAGGCCAA
TGGGCATGGGCATCATGGGCGCTCTAATGGGAGAGCGACGATCCCGCGGC
GGCGGAGTTGGCGTGGCCGTCGGCAGAGGCGTCGCCCAGAACAATCGGAG
GCGTACGTTCGGCGGCGGAATCGGTGATCATGACACATTCGCGACGGCCA
GTGCTGGTATGCCCAGGGTCCGTAGCGTTAGCAGTGTCAGTAGCGCCGAA
AGTTCAGCTAGCACAGCTAGCAGCAGCAGCAGCGATGGCGGCGGCGGCGG
AGAGCGGCAGCAGCCATCAAGGAGACGCGGAGTGTCGCTCATGACGTCTG
AGATCTCTTTTCACCCGGGGATGGAATTGTTCGGGCCCGGCCTAGTAGAC
CTTGAGACGGCGATGCCGCCGCTGCACCCAACGCGGCGCTCGCTGTCCCC
CCAGCCTCAACGTCGCCTCTCGGCAAGCCAAGAACAGGAGGAAGGACAGA
CGGAAGGTGTGCTCGGTGAAGACGGCCCAGTGCTGCTCCTGTCGAACTCC
CTCGATCACCGAGGAGACGCGGCGAGAATGCAGGCCGCCGGCTCCGCCGT
GGCAGAACCCGGGGGTCCTCTCGGCGGCGACGATAGCTTCACCTCTTCCA
CTGCCGCCGCCGACGGCACACCGTTGTATGACGATGATGTGTCGGCATCA
ACAGCGCCAATGTCACCACCAACGTTAGGCGGCAGGCCAATGGGCATGGG
CATCATGGGCGCTCTAATGGGAGAGCGACGATCCCGCGGCGGCGGAGTTG
GCGTGGCCGTCGGCAGAGGCGTCGCCCAGAACAATCGGAGGCGTACGTTC
GGCGGCGGAATCGGTGATCATGACACATTCGCGACGGCCAGTGCTGGTAT
GCCCAGGGTCCGTAGCGTTAGCAGTGTCAGTAGCGCCGAAAGTTCAGCTA
GCACAGCTAGCAGCAGCAGCAGCGATGGCGGCGGCGGCGGAGAGCGGCAG
CAGCCATCAAGGAGACGCGGAGTGTCGCTC
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