mRNA_H-paniculata_contig46797.11651.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46797.11651.1
Unique NamemRNA_H-paniculata_contig46797.11651.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig46797.11651.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.630e-14
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 3 
Query:   81 PCSSNASREWVVNDAASAMALTAAVNCSGGVFHVEWTGNIVVEQEIYVAGGTSLHVAGSGAQAGMEG 281
            PCS+   + WVV D+A A+AL AAVNCSGG F VEW G++VVE  IYV  GT + V G G+ A ++G
Sbjct:   38 PCSAEVQQSWVVADSAEALALAAAVNCSGGSFEVEWRGSVVVESPIYVRDGTIVTVTGVGSTAVIDG 104
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BLAST of mRNA_H-paniculata_contig46797.11651.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.410e-13
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 3 
Query:   75 AAPCSSNASREWVVNDAASAMALTAAVNCSGGVFHVEWTGNIVVEQEIYVAGGTSLHVAGSGAQAGMEG 281
            A PC+++A + WVV  +  A AL AAVNCSGG+F VEW G +VV Q  YV  GT L ++G+ + A +EG
Sbjct:  130 ALPCTADAQQTWVVESSTQAQALAAAVNCSGGLFEVEWRGRVVVGQPFYVVDGTVLTISGADSSAVVEG 198
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BLAST of mRNA_H-paniculata_contig46797.11651.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.910e-12
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 3 
Query:   75 AAPCSSNASREWVVNDAASAMALTAAVNCSGGVFHVEWTGNIVVEQEIYVAGGTSLHVAGSGAQAGMEG 281
            A PC+++A + WVV  +A A AL AAVNCSGG+F VEW G +VV +   V  GT L V+G+ + A +EG
Sbjct:  189 ALPCTADAQQTWVVESSAQAQALAAAVNCSGGLFEVEWRGRVVVGEPFNVVDGTVLTVSGADSSAVVEG 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46797.11651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTL7_ECTSI3.630e-1455.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G2X5_ECTSI4.410e-1350.72Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5K7Z1_9PHAE3.910e-1250.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46797contigH-paniculata_contig46797:1170..1450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue1e-12
Seed eggNOG ortholog2880.D8LHQ8
Hectar predicted targeting categorysignal peptide
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size281
Cds size273
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930393.3943188-UTR-H-paniculata_contig46797:1169..11771622930393.3943188-UTR-H-paniculata_contig46797:1169..1177Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46797 1170..1177 +
1691481271.3610206-UTR-H-paniculata_contig46797:1169..11771691481271.3610206-UTR-H-paniculata_contig46797:1169..1177Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46797 1170..1177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930393.4170601-CDS-H-paniculata_contig46797:1177..14501622930393.4170601-CDS-H-paniculata_contig46797:1177..1450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46797 1178..1450 +
1691481271.3714366-CDS-H-paniculata_contig46797:1177..14501691481271.3714366-CDS-H-paniculata_contig46797:1177..1450Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46797 1178..1450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46797.11651.1prot_H-paniculata_contig46797.11651.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46797 1178..1450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46797.11651.1

>prot_H-paniculata_contig46797.11651.1 ID=prot_H-paniculata_contig46797.11651.1|Name=mRNA_H-paniculata_contig46797.11651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MTGRSSWIIVIILVVISYTGIVAAPCSSNASREWVVNDAASAMALTAAVN
CSGGVFHVEWTGNIVVEQEIYVAGGTSLHVAGSGAQAGMEG
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mRNA from alignment at H-paniculata_contig46797:1170..1450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46797.11651.1 ID=mRNA_H-paniculata_contig46797.11651.1|Name=mRNA_H-paniculata_contig46797.11651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=281bp|location=Sequence derived from alignment at H-paniculata_contig46797:1170..1450+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAACTGATGACGGGACGCAGTAGCTGGATCATCGTAATCATTCTGGTC
GTGATATCCTACACTGGTATTGTTGCCGCTCCTTGCAGCAGCAATGCTTC
GCGTGAGTGGGTTGTTAATGATGCAGCCTCGGCGATGGCTCTCACTGCAG
CAGTAAATTGCTCTGGTGGGGTATTTCATGTAGAATGGACAGGAAATATT
GTCGTGGAACAGGAAATTTACGTGGCGGGTGGGACTTCCCTCCATGTGGC
TGGAAGCGGGGCGCAGGCGGGAATGGAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig46797:1170..1450+

>mRNA_H-paniculata_contig46797.11651.1 ID=mRNA_H-paniculata_contig46797.11651.1|Name=mRNA_H-paniculata_contig46797.11651.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig46797:1170..1450+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGGACGCAGTAGCTGGATCATCGTAATCATTCTGGTCGTGATATC
CTACACTGGTATTGTTGCCGCTCCTTGCAGCAGCAATGCTTCGCGTGAGT
GGGTTGTTAATGATGCAGCCTCGGCGATGGCTCTCACTGCAGCAGTAAAT
TGCTCTGGTGGGGTATTTCATGTAGAATGGACAGGAAATATTGTCGTGGA
ACAGGAAATTTACGTGGCGGGTGGGACTTCCCTCCATGTGGCTGGAAGCG
GGGCGCAGGCGGGAATGGAGGGGATGACGGGACGCAGTAGCTGGATCATC
GTAATCATTCTGGTCGTGATATCCTACACTGGTATTGTTGCCGCTCCTTG
CAGCAGCAATGCTTCGCGTGAGTGGGTTGTTAATGATGCAGCCTCGGCGA
TGGCTCTCACTGCAGCAGTAAATTGCTCTGGTGGGGTATTTCATGTAGAA
TGGACAGGAAATATTGTCGTGGAACAGGAAATTTACGTGGCGGGTGGGAC
TTCCCTCCATGTGGCTGGAAGCGGGGCGCAGGCGGGAATGGAGGGG
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